Wall clock time and date at job start Mon Mar 30 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99629 * 2 1 4 4 H 1.48497 * 109.47565 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47129 * 120.00245 * 3 2 1 6 6 H 1.48500 * 109.47170 * 239.99837 * 3 2 1 7 7 C 1.38809 * 120.00482 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00469 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99588 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99813 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46882 * 174.73785 * 10 9 7 12 12 H 1.09004 * 109.87334 * 56.83217 * 11 10 9 13 13 C 1.54329 * 109.88520 * 295.81361 * 11 10 9 14 14 C 1.55160 * 102.94129 * 218.39268 * 13 11 10 15 15 C 1.54911 * 101.58442 * 35.49752 * 14 13 11 16 16 N 1.47019 * 109.88100 * 178.00496 * 11 10 9 17 17 C 1.34781 * 125.64604 * 298.33789 * 16 11 10 18 18 O 1.21507 * 120.00113 * 4.58816 * 17 16 11 19 19 C 1.48182 * 119.99737 * 184.59118 * 17 16 11 20 20 C 1.39305 * 119.72109 * 179.72682 * 19 17 16 21 21 C 1.38589 * 119.05803 * 179.77371 * 20 19 17 22 22 C 1.38627 * 118.48634 * 0.49025 * 21 20 19 23 23 C 1.38556 * 119.35310 * 359.75096 * 22 21 20 24 24 N 1.31527 * 120.90598 * 0.02562 * 23 22 21 25 25 H 0.97001 * 120.00344 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00443 * 359.97438 * 9 7 2 27 27 H 1.08990 * 109.46962 * 294.74396 * 10 9 7 28 28 H 1.09005 * 109.46784 * 54.74172 * 10 9 7 29 29 H 1.09001 * 110.71785 * 336.75269 * 13 11 10 30 30 H 1.08993 * 110.71762 * 100.02715 * 13 11 10 31 31 H 1.08993 * 111.00734 * 153.57873 * 14 13 11 32 32 H 1.09005 * 111.00097 * 277.42595 * 14 13 11 33 33 H 1.08995 * 110.35968 * 81.83045 * 15 14 13 34 34 H 1.08998 * 110.36893 * 204.15190 * 15 14 13 35 35 H 1.08005 * 120.46916 * 0.02562 * 20 19 17 36 36 H 1.07993 * 120.75680 * 180.24508 * 21 20 19 37 37 H 1.07997 * 120.32332 * 179.72612 * 22 21 20 38 38 H 1.07997 * 119.54814 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0693 -4.8166 0.1328 12 1 0.3360 -4.7720 -0.6725 13 6 0.3541 -4.7435 1.4985 14 6 0.2511 -6.2341 1.9170 15 6 1.5792 -6.8058 1.3610 16 7 1.7908 -6.0967 0.0859 17 6 2.5239 -6.5475 -0.9513 18 8 2.6984 -5.8412 -1.9245 19 6 3.1171 -7.9046 -0.9049 20 6 3.8691 -8.3670 -1.9825 21 6 4.4215 -9.6366 -1.9225 22 6 4.1939 -10.4038 -0.7906 23 6 3.4314 -9.8817 0.2418 24 7 2.9226 -8.6716 0.1606 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 0.0005 27 1 2.6123 -3.7563 -0.9327 28 1 2.7536 -3.6747 0.8397 29 1 0.9512 -4.1817 2.2168 30 1 -0.6373 -4.3036 1.3915 31 1 0.2067 -6.3332 3.0015 32 1 -0.6077 -6.7133 1.4469 33 1 2.3985 -6.6002 2.0499 34 1 1.4878 -7.8781 1.1882 35 1 4.0229 -7.7432 -2.8508 36 1 5.0125 -10.0210 -2.7406 37 1 4.6065 -11.3989 -0.7143 38 1 3.2525 -10.4766 1.1253 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723875679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:38 Heat of formation + Delta-G solvation = 29.441362 kcal Electronic energy + Delta-G solvation = -20945.396923 eV Core-core repulsion = 17788.659485 eV Total energy + Delta-G solvation = -3156.737439 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80476 -39.31243 -37.24601 -34.44555 -33.03887 -31.85230 -31.23138 -30.98647 -28.56015 -25.36452 -24.65949 -23.73225 -22.76023 -21.90085 -20.79374 -19.36705 -17.55698 -17.07656 -16.73121 -16.19149 -16.01558 -15.19564 -14.86372 -14.50439 -14.32035 -13.69780 -13.58855 -13.46224 -13.17807 -13.10685 -12.68352 -12.52699 -12.26278 -11.96482 -11.37831 -11.04333 -10.85249 -10.76682 -10.46475 -10.35784 -10.22986 -10.05598 -9.99901 -9.64505 -9.44008 -9.38522 -8.76093 -8.30722 -6.81900 -5.67964 -2.95766 0.46847 0.94416 2.77881 3.04016 3.50737 3.54273 3.56149 3.73665 3.95702 4.49233 4.52278 4.68892 4.70996 4.80763 4.86286 4.99515 5.13973 5.25353 5.45923 5.57443 5.65661 5.68206 5.72183 5.82466 5.91101 6.02243 6.09961 6.16540 6.23157 6.30874 6.37510 6.54279 6.67429 6.90486 7.10397 7.47594 7.74054 7.79052 8.30495 8.51271 9.61931 10.19180 10.55262 11.55168 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.004030 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.924289 B = 6947.029675 C = 7616.237952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.287 1.287 6 H -0.286 1.286 7 C -0.233 4.233 8 H 0.069 0.931 9 N -0.728 5.728 10 C 0.145 3.855 11 C 0.129 3.871 12 H 0.076 0.924 13 C -0.120 4.120 14 C -0.139 4.139 15 C 0.098 3.902 16 N -0.590 5.590 17 C 0.575 3.425 18 O -0.523 6.523 19 C 0.091 3.909 20 C -0.113 4.113 21 C -0.081 4.081 22 C -0.157 4.157 23 C 0.093 3.907 24 N -0.454 5.454 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.034 0.966 28 H 0.020 0.980 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.186 -24.584 2.139 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.017 3.983 11 C 0.026 3.974 12 H 0.094 0.906 13 C -0.158 4.158 14 C -0.177 4.177 15 C -0.025 4.025 16 N -0.322 5.322 17 C 0.361 3.639 18 O -0.399 6.399 19 C -0.047 4.047 20 C -0.134 4.134 21 C -0.107 4.107 22 C -0.177 4.177 23 C -0.066 4.066 24 N -0.166 5.166 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.127 0.873 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.942 -23.732 2.225 24.343 hybrid contribution 0.739 0.549 -0.642 1.122 sum 5.681 -23.183 1.584 23.922 Atomic orbital electron populations 1.69646 1.05053 1.25635 1.58136 1.24707 0.95532 0.97558 1.03258 0.86252 0.78488 0.83546 0.77833 1.21715 1.21350 1.21301 1.19180 0.90997 0.84057 1.42247 0.91338 1.42200 1.05740 0.99701 1.89658 1.20977 0.93371 0.85048 0.98903 1.21893 0.94214 0.82945 0.98363 0.90572 1.22655 1.01569 0.95716 0.95826 1.22877 0.97339 0.96468 1.01029 1.22743 0.96631 0.99002 0.84109 1.48316 1.48520 1.20003 1.15343 1.17511 0.78978 0.84894 0.82476 1.90836 1.59649 1.56637 1.32791 1.21271 0.97386 0.94750 0.91275 1.22172 0.95387 0.96357 0.99479 1.21639 0.97436 0.93469 0.98158 1.22353 0.99378 1.01257 0.94674 1.22900 0.93570 0.91720 0.98441 1.67844 1.19075 1.05566 1.24096 0.93554 0.78326 0.94776 0.96166 0.89906 0.89892 0.90188 0.91104 0.91845 0.87340 0.83293 0.84124 0.84398 0.82098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.07 13.06 55.49 0.72 -28.35 16 2 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 23.27 29.55 -169.99 -5.02 18.25 16 4 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 7 C -0.23 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.73 -19.67 5.37 -59.91 -0.32 -19.99 16 10 C 0.15 3.35 5.62 -4.04 -0.02 3.32 16 11 C 0.13 2.41 2.98 -66.95 -0.20 2.21 16 12 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 13 C -0.12 -1.90 6.08 -24.89 -0.15 -2.05 16 14 C -0.14 -1.68 7.09 -24.58 -0.17 -1.86 16 15 C 0.10 1.28 6.13 -2.53 -0.02 1.26 16 16 N -0.59 -9.78 3.06 -164.00 -0.50 -10.29 16 17 C 0.58 10.00 7.66 -12.17 -0.09 9.91 16 18 O -0.52 -10.89 15.16 5.36 0.08 -10.81 16 19 C 0.09 1.25 6.72 -83.00 -0.56 0.69 16 20 C -0.11 -1.29 9.63 -39.06 -0.38 -1.66 16 21 C -0.08 -0.64 10.17 -39.31 -0.40 -1.04 16 22 C -0.16 -1.06 10.11 -39.32 -0.40 -1.46 16 23 C 0.09 0.75 11.18 -17.56 -0.20 0.56 16 24 N -0.45 -5.25 6.54 -9.80 -0.06 -5.31 16 25 H 0.25 7.64 8.31 -40.82 -0.34 7.31 16 26 H 0.38 10.61 7.52 -40.82 -0.31 10.31 16 27 H 0.03 0.87 6.64 -51.93 -0.34 0.53 16 28 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.08 1.42 7.81 -51.93 -0.41 1.02 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.11 1.29 5.59 -51.93 -0.29 1.00 16 35 H 0.15 1.70 7.64 -52.48 -0.40 1.30 16 36 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 37 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 38 H 0.16 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 317.23 15.07 4.78 4.78 Total: -1.00 -34.93 317.23 -8.25 -43.18 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.10 Total: 6.26 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.83 Total: 2.26 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.16 Total: -63.93 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.93 -8.25 -43.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723875679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.623 kcal (2) G-P(sol) polarization free energy of solvation -34.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds