Wall clock time and date at job start Mon Mar 30 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99629 * 2 1 4 4 H 1.48497 * 109.47565 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47129 * 120.00245 * 3 2 1 6 6 H 1.48500 * 109.47170 * 239.99837 * 3 2 1 7 7 C 1.38809 * 120.00482 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00469 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99588 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99813 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46882 * 174.73785 * 10 9 7 12 12 H 1.09004 * 109.87334 * 56.83217 * 11 10 9 13 13 C 1.54329 * 109.88520 * 295.81361 * 11 10 9 14 14 C 1.55160 * 102.94129 * 218.39268 * 13 11 10 15 15 C 1.54911 * 101.58442 * 35.49752 * 14 13 11 16 16 N 1.47019 * 109.88100 * 178.00496 * 11 10 9 17 17 C 1.34781 * 125.64604 * 298.33789 * 16 11 10 18 18 O 1.21507 * 120.00113 * 4.58816 * 17 16 11 19 19 C 1.48182 * 119.99737 * 184.59118 * 17 16 11 20 20 C 1.39305 * 119.72109 * 179.72682 * 19 17 16 21 21 C 1.38589 * 119.05803 * 179.77371 * 20 19 17 22 22 C 1.38627 * 118.48634 * 0.49025 * 21 20 19 23 23 C 1.38556 * 119.35310 * 359.75096 * 22 21 20 24 24 N 1.31527 * 120.90598 * 0.02562 * 23 22 21 25 25 H 0.97001 * 120.00344 * 359.97438 * 1 2 3 26 26 H 0.96999 * 120.00443 * 359.97438 * 9 7 2 27 27 H 1.08990 * 109.46962 * 294.74396 * 10 9 7 28 28 H 1.09005 * 109.46784 * 54.74172 * 10 9 7 29 29 H 1.09001 * 110.71785 * 336.75269 * 13 11 10 30 30 H 1.08993 * 110.71762 * 100.02715 * 13 11 10 31 31 H 1.08993 * 111.00734 * 153.57873 * 14 13 11 32 32 H 1.09005 * 111.00097 * 277.42595 * 14 13 11 33 33 H 1.08995 * 110.35968 * 81.83045 * 15 14 13 34 34 H 1.08998 * 110.36893 * 204.15190 * 15 14 13 35 35 H 1.08005 * 120.46916 * 0.02562 * 20 19 17 36 36 H 1.07993 * 120.75680 * 180.24508 * 21 20 19 37 37 H 1.07997 * 120.32332 * 179.72612 * 22 21 20 38 38 H 1.07997 * 119.54814 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0693 -4.8166 0.1328 12 1 0.3360 -4.7720 -0.6725 13 6 0.3541 -4.7435 1.4985 14 6 0.2511 -6.2341 1.9170 15 6 1.5792 -6.8058 1.3610 16 7 1.7908 -6.0967 0.0859 17 6 2.5239 -6.5475 -0.9513 18 8 2.6984 -5.8412 -1.9245 19 6 3.1171 -7.9046 -0.9049 20 6 3.8691 -8.3670 -1.9825 21 6 4.4215 -9.6366 -1.9225 22 6 4.1939 -10.4038 -0.7906 23 6 3.4314 -9.8817 0.2418 24 7 2.9226 -8.6716 0.1606 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 0.0005 27 1 2.6123 -3.7563 -0.9327 28 1 2.7536 -3.6747 0.8397 29 1 0.9512 -4.1817 2.2168 30 1 -0.6373 -4.3036 1.3915 31 1 0.2067 -6.3332 3.0015 32 1 -0.6077 -6.7133 1.4469 33 1 2.3985 -6.6002 2.0499 34 1 1.4878 -7.8781 1.1882 35 1 4.0229 -7.7432 -2.8508 36 1 5.0125 -10.0210 -2.7406 37 1 4.6065 -11.3989 -0.7143 38 1 3.2525 -10.4766 1.1253 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723875679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:38 Heat of formation + Delta-G solvation = 5.368034 kcal Electronic energy + Delta-G solvation = -20946.440821 eV Core-core repulsion = 17788.659485 eV Total energy + Delta-G solvation = -3157.781337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.81498 -40.40147 -38.62296 -36.45314 -33.99340 -33.31976 -32.69108 -31.99703 -30.26621 -26.79052 -26.14880 -24.48964 -24.35894 -23.31356 -21.98727 -20.72954 -19.31422 -18.32098 -18.03558 -17.32609 -16.78044 -16.54034 -16.37346 -15.87049 -15.59602 -15.13613 -15.08249 -15.01223 -14.49197 -14.23316 -14.01421 -13.79305 -13.60708 -13.04669 -12.97779 -12.82739 -12.73349 -12.24442 -12.05533 -11.93370 -11.84099 -11.60336 -11.36202 -10.95636 -10.93183 -10.32025 -10.21977 -9.65260 -9.07216 -7.99143 -5.29724 -0.35781 0.27650 1.43637 1.48247 1.54378 1.67973 1.81534 2.53607 2.87216 3.04368 3.33021 3.60514 3.67845 3.83539 3.91040 3.98841 4.06638 4.09639 4.13098 4.29654 4.33846 4.46463 4.56079 4.76425 4.80032 4.89787 5.02139 5.07211 5.07484 5.12885 5.15675 5.18473 5.34865 5.40645 5.46023 5.71539 6.21634 6.44388 6.71212 7.04523 7.28366 7.98233 8.27724 9.23933 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028802 B = 0.004030 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.924289 B = 6947.029675 C = 7616.237952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.978 3.022 4 H -0.288 1.288 5 H -0.275 1.275 6 H -0.282 1.282 7 C -0.255 4.255 8 H 0.067 0.933 9 N -0.735 5.735 10 C 0.154 3.846 11 C 0.134 3.866 12 H 0.056 0.944 13 C -0.116 4.116 14 C -0.122 4.122 15 C 0.099 3.901 16 N -0.592 5.592 17 C 0.564 3.436 18 O -0.577 6.577 19 C 0.059 3.941 20 C -0.127 4.127 21 C -0.077 4.077 22 C -0.133 4.133 23 C 0.090 3.910 24 N -0.468 5.468 25 H 0.255 0.745 26 H 0.377 0.623 27 H 0.003 0.997 28 H 0.017 0.983 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.173 0.827 37 H 0.183 0.817 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.168 -27.535 3.612 28.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.200 1.200 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.085 0.915 9 N -0.379 5.379 10 C 0.027 3.973 11 C 0.030 3.970 12 H 0.074 0.926 13 C -0.154 4.154 14 C -0.160 4.160 15 C -0.022 4.022 16 N -0.323 5.323 17 C 0.353 3.647 18 O -0.456 6.456 19 C -0.077 4.077 20 C -0.149 4.149 21 C -0.103 4.103 22 C -0.152 4.152 23 C -0.069 4.069 24 N -0.180 5.180 25 H 0.063 0.937 26 H 0.210 0.790 27 H 0.021 0.979 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.191 0.809 37 H 0.201 0.799 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.936 -26.720 3.725 27.623 hybrid contribution 0.509 1.308 -1.117 1.794 sum 6.445 -25.412 2.608 26.346 Atomic orbital electron populations 1.69801 1.06499 1.26448 1.58778 1.25585 0.96536 1.01026 1.02970 0.85155 0.77278 0.78782 0.78172 1.21324 1.20045 1.20782 1.19522 0.91235 0.85382 1.42526 0.91537 1.42300 1.05527 1.00509 1.89531 1.20906 0.93995 0.85496 0.96931 1.21651 0.92973 0.82765 0.99618 0.92602 1.22563 1.00531 0.98713 0.93565 1.22890 0.97233 0.92840 1.02994 1.22967 0.97210 0.99716 0.82357 1.48468 1.48064 1.19197 1.16620 1.18320 0.78335 0.86340 0.81698 1.90783 1.61604 1.58565 1.34688 1.20714 1.00021 0.93516 0.93464 1.22214 0.96037 0.98060 0.98551 1.22032 0.96740 0.91767 0.99750 1.22880 0.96958 1.02487 0.92900 1.23638 0.92653 0.90530 1.00116 1.67686 1.20088 1.06977 1.23294 0.93656 0.79044 0.97867 0.96498 0.91253 0.90147 0.87067 0.89805 0.91581 0.85478 0.84898 0.80934 0.79930 0.78316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.16 13.06 21.65 0.28 -60.88 16 2 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 3 Si 0.98 48.41 29.55 68.60 2.03 50.44 16 4 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 7 C -0.26 -15.60 9.99 84.03 0.84 -14.77 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -41.73 5.37 -343.46 -1.84 -43.58 16 10 C 0.15 7.60 5.62 86.38 0.49 8.09 16 11 C 0.13 5.31 2.98 45.34 0.14 5.44 16 12 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 13 C -0.12 -3.73 6.08 31.79 0.19 -3.54 16 14 C -0.12 -2.72 7.09 31.99 0.23 -2.50 16 15 C 0.10 2.47 6.13 86.86 0.53 3.00 16 16 N -0.59 -20.45 3.06 -791.06 -2.42 -22.87 16 17 C 0.56 20.91 7.66 86.89 0.67 21.57 16 18 O -0.58 -26.29 15.16 -3.74 -0.06 -26.34 16 19 C 0.06 1.63 6.72 41.91 0.28 1.91 16 20 C -0.13 -2.91 9.63 22.61 0.22 -2.69 16 21 C -0.08 -1.00 10.17 22.45 0.23 -0.77 16 22 C -0.13 -1.15 10.11 22.44 0.23 -0.93 16 23 C 0.09 1.10 11.18 84.81 0.95 2.05 16 24 N -0.47 -9.97 6.54 -184.90 -1.21 -11.17 16 25 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 26 H 0.38 21.98 7.52 -92.71 -0.70 21.28 16 27 H 0.00 0.19 6.64 -2.39 -0.02 0.17 16 28 H 0.02 0.84 8.09 -2.38 -0.02 0.82 16 29 H 0.07 2.42 7.81 -2.39 -0.02 2.40 16 30 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.13 2.76 5.59 -2.39 -0.01 2.75 16 35 H 0.13 3.33 7.64 -2.91 -0.02 3.31 16 36 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 37 H 0.18 0.04 8.06 -2.91 -0.02 0.01 16 38 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -80.88 317.23 2.60 -78.29 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.37 Total: 22.93 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 5.45 Total: 13.19 kcal Atomic # 7 Polarization: -133.31 SS G_CDS: -5.19 Total: -138.50 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.06 Total: -26.34 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -80.88 2.60 -78.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723875679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.656 kcal (2) G-P(sol) polarization free energy of solvation -80.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds