Wall clock time and date at job start Mon Mar 30 2020 02:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00127 * 2 1 4 4 H 1.48495 * 109.47587 * 270.00784 * 3 2 1 5 5 H 1.48500 * 109.46996 * 30.01029 * 3 2 1 6 6 H 1.48499 * 109.46799 * 150.00513 * 3 2 1 7 7 C 1.38810 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00468 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00576 * 185.77752 * 9 7 2 11 11 C 1.52995 * 112.90801 * 292.60121 * 10 9 7 12 12 N 1.46506 * 109.47164 * 311.31977 * 11 10 9 13 13 C 1.34776 * 119.99991 * 175.68091 * 12 11 10 14 14 O 1.21507 * 120.00161 * 359.97438 * 13 12 11 15 15 C 1.48149 * 119.99665 * 179.97438 * 13 12 11 16 16 C 1.39822 * 120.92616 * 359.71687 * 15 13 12 17 17 C 1.38148 * 119.00555 * 179.79813 * 16 15 13 18 18 N 1.31817 * 120.89361 * 0.48883 * 17 16 15 19 19 C 1.31813 * 122.04599 * 359.73905 * 18 17 16 20 20 C 1.38149 * 120.89860 * 0.02562 * 19 18 17 21 21 C 1.53786 * 113.61182 * 63.84963 * 10 9 7 22 22 C 1.53780 * 87.08135 * 89.11806 * 21 10 9 23 23 C 1.53780 * 87.08144 * 25.43415 * 22 21 10 24 24 H 0.97004 * 120.00036 * 359.97438 * 1 2 3 25 25 H 0.97006 * 119.99511 * 5.77436 * 9 7 2 26 26 H 1.08998 * 109.47270 * 71.31609 * 11 10 9 27 27 H 1.08997 * 109.47218 * 191.32027 * 11 10 9 28 28 H 0.97002 * 119.99847 * 355.67229 * 12 11 10 29 29 H 1.08004 * 120.49515 * 359.97438 * 16 15 13 30 30 H 1.07999 * 119.55211 * 180.23011 * 17 16 15 31 31 H 1.08003 * 119.54953 * 180.02562 * 19 18 17 32 32 H 1.08004 * 120.49545 * 180.02562 * 20 19 18 33 33 H 1.08995 * 113.61304 * 334.56417 * 21 10 9 34 34 H 1.08999 * 113.61335 * 203.66823 * 21 10 9 35 35 H 1.08994 * 113.61352 * 139.97875 * 22 21 10 36 36 H 1.09000 * 113.61184 * 270.88493 * 22 21 10 37 37 H 1.08998 * 113.62054 * 89.11420 * 23 22 21 38 38 H 1.09006 * 113.60977 * 219.93807 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4478 2.6526 0.7003 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0525 -3.6536 0.1266 11 6 2.9288 -3.9618 -1.0891 12 7 2.1452 -3.7825 -2.3139 13 6 2.7367 -3.9148 -3.5177 14 8 3.9200 -4.1823 -3.5871 15 6 1.9442 -3.7340 -4.7563 16 6 0.5803 -3.4317 -4.6989 17 6 -0.1196 -3.2673 -5.8786 18 7 0.4793 -3.4013 -7.0452 19 6 1.7616 -3.6902 -7.1440 20 6 2.5381 -3.8668 -6.0150 21 6 2.7848 -3.8111 1.4697 22 6 1.4901 -4.4388 2.0124 23 6 1.1658 -4.8324 0.5616 24 1 -0.4850 0.8401 0.0004 25 1 0.3592 -2.3901 -0.0847 26 1 3.7831 -3.2851 -1.1021 27 1 3.2816 -4.9914 -1.0310 28 1 1.2007 -3.5687 -2.2585 29 1 0.0820 -3.3254 -3.7466 30 1 -1.1726 -3.0300 -5.8446 31 1 2.2114 -3.7903 -8.1208 32 1 3.5882 -4.1030 -6.1035 33 1 3.0411 -2.8623 1.9411 34 1 3.6239 -4.5057 1.4307 35 1 1.6604 -5.2922 2.6686 36 1 0.7955 -3.7118 2.4333 37 1 1.5622 -5.8062 0.2743 38 1 0.1147 -4.7094 0.3004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724780060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:12 Heat of formation + Delta-G solvation = 33.647779 kcal Electronic energy + Delta-G solvation = -21114.352100 eV Core-core repulsion = 17957.797066 eV Total energy + Delta-G solvation = -3156.555035 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45177 -39.23921 -38.26587 -34.16096 -33.31451 -32.55658 -31.24029 -30.05502 -27.54426 -25.32246 -24.57660 -23.78519 -23.34318 -21.71107 -20.33994 -18.58761 -17.84806 -17.18066 -16.50898 -15.69367 -15.50644 -15.26541 -15.01457 -14.70198 -14.33533 -13.99056 -13.78372 -13.71028 -13.35140 -13.20011 -12.73247 -12.23354 -11.77262 -11.68963 -11.26592 -11.08008 -10.89071 -10.41057 -10.28094 -10.24164 -10.01713 -9.86453 -9.75170 -9.55090 -9.44071 -9.22907 -8.96042 -8.59873 -7.13628 -5.90056 -3.20453 0.77348 1.06816 3.09679 3.36908 3.42384 3.43765 3.45167 3.91745 4.37673 4.47670 4.69781 4.83334 4.99361 5.06449 5.12885 5.17593 5.24789 5.41597 5.43208 5.50550 5.68764 5.71087 5.82518 5.96277 6.07767 6.09939 6.15328 6.29433 6.32455 6.40570 6.55955 6.66746 6.78756 6.92124 7.01020 7.64511 7.84114 7.87458 8.28279 8.46932 9.40070 9.91794 10.27358 11.31648 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.006082 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.943795 B = 4602.731968 C = 5680.298780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.007 4.007 3 Si 0.903 3.097 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.699 5.699 10 C 0.171 3.829 11 C 0.120 3.880 12 N -0.689 5.689 13 C 0.550 3.450 14 O -0.547 6.547 15 C -0.080 4.080 16 C -0.136 4.136 17 C 0.095 3.905 18 N -0.475 5.475 19 C 0.090 3.910 20 C -0.120 4.120 21 C -0.149 4.149 22 C -0.128 4.128 23 C -0.145 4.145 24 H 0.256 0.744 25 H 0.386 0.614 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.404 0.596 29 H 0.143 0.857 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.146 0.854 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 -10.155 -6.208 11.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.734 3.266 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.078 3.922 11 C -0.006 4.006 12 N -0.338 5.338 13 C 0.336 3.664 14 O -0.426 6.426 15 C -0.091 4.091 16 C -0.156 4.156 17 C -0.062 4.062 18 N -0.185 5.185 19 C -0.067 4.067 20 C -0.141 4.141 21 C -0.189 4.189 22 C -0.166 4.166 23 C -0.183 4.183 24 H 0.066 0.934 25 H 0.221 0.779 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.240 0.760 29 H 0.161 0.839 30 H 0.179 0.821 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.858 -10.064 -6.931 12.249 hybrid contribution 0.222 1.135 0.857 1.439 sum 1.080 -8.929 -6.074 10.853 Atomic orbital electron populations 1.69641 1.05023 1.25838 1.57280 1.24711 0.95467 0.97608 1.02511 0.86250 0.78813 0.83918 0.77589 1.21730 1.21733 1.20686 1.19081 0.91039 0.83524 1.43021 0.91191 1.42058 1.05948 0.99017 1.86970 1.20852 0.92556 0.87757 0.91049 1.21897 0.95250 0.99591 0.83897 1.45661 1.14211 1.68964 1.04987 1.18141 0.86871 0.77942 0.83474 1.90729 1.15318 1.49225 1.87291 1.20517 0.94188 0.99747 0.94636 1.22475 0.93925 0.98159 1.01045 1.22758 1.00574 0.95754 0.87080 1.67544 1.11583 1.10581 1.28799 1.22751 0.89473 0.95873 0.98621 1.22296 1.02101 0.97858 0.91796 1.23272 0.96167 1.01048 0.98413 1.22626 0.98684 0.99733 0.95522 1.23199 1.00038 0.97674 0.97341 0.93425 0.77916 0.91499 0.92430 0.75964 0.83917 0.82098 0.82272 0.83650 0.90530 0.91341 0.92732 0.89932 0.90462 0.91670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.04 13.07 55.49 0.73 -25.32 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.90 21.78 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -5.98 9.23 -15.06 -0.14 -6.11 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.70 -15.22 4.56 -46.48 -0.21 -15.44 16 10 C 0.17 3.01 0.91 -131.01 -0.12 2.89 16 11 C 0.12 2.10 5.06 -4.04 -0.02 2.08 16 12 N -0.69 -11.67 5.35 -61.15 -0.33 -12.00 16 13 C 0.55 9.64 7.80 -12.19 -0.10 9.55 16 14 O -0.55 -11.02 16.45 5.36 0.09 -10.93 16 15 C -0.08 -1.19 5.91 -104.65 -0.62 -1.81 16 16 C -0.14 -1.80 9.62 -39.02 -0.38 -2.17 16 17 C 0.09 1.18 11.17 -17.59 -0.20 0.98 16 18 N -0.48 -6.28 10.34 -13.30 -0.14 -6.42 16 19 C 0.09 1.07 11.17 -17.59 -0.20 0.87 16 20 C -0.12 -1.59 9.68 -39.03 -0.38 -1.97 16 21 C -0.15 -2.48 7.27 -25.92 -0.19 -2.67 16 22 C -0.13 -1.95 7.99 -25.92 -0.21 -2.16 16 23 C -0.14 -2.13 7.37 -25.92 -0.19 -2.32 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.39 8.93 7.89 -40.82 -0.32 8.61 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.06 0.92 7.94 -51.93 -0.41 0.51 16 28 H 0.40 6.51 6.25 -40.82 -0.26 6.26 16 29 H 0.14 1.74 6.54 -52.48 -0.34 1.40 16 30 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 31 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.15 1.81 7.74 -52.48 -0.41 1.41 16 33 H 0.08 1.46 7.79 -51.93 -0.40 1.05 16 34 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.08 1.00 7.96 -51.93 -0.41 0.59 16 38 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -30.07 324.30 -7.88 -37.95 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -5.06 Total: 13.64 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.82 Total: -3.13 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.05 Total: -59.17 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.07 -7.88 -37.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724780060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.601 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds