Wall clock time and date at job start Mon Mar 30 2020 02:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00127 * 2 1 4 4 H 1.48495 * 109.47587 * 270.00784 * 3 2 1 5 5 H 1.48500 * 109.46996 * 30.01029 * 3 2 1 6 6 H 1.48499 * 109.46799 * 150.00513 * 3 2 1 7 7 C 1.38810 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00468 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46495 * 120.00576 * 185.77752 * 9 7 2 11 11 C 1.52995 * 112.90801 * 292.60121 * 10 9 7 12 12 N 1.46506 * 109.47164 * 311.31977 * 11 10 9 13 13 C 1.34776 * 119.99991 * 175.68091 * 12 11 10 14 14 O 1.21507 * 120.00161 * 359.97438 * 13 12 11 15 15 C 1.48149 * 119.99665 * 179.97438 * 13 12 11 16 16 C 1.39822 * 120.92616 * 359.71687 * 15 13 12 17 17 C 1.38148 * 119.00555 * 179.79813 * 16 15 13 18 18 N 1.31817 * 120.89361 * 0.48883 * 17 16 15 19 19 C 1.31813 * 122.04599 * 359.73905 * 18 17 16 20 20 C 1.38149 * 120.89860 * 0.02562 * 19 18 17 21 21 C 1.53786 * 113.61182 * 63.84963 * 10 9 7 22 22 C 1.53780 * 87.08135 * 89.11806 * 21 10 9 23 23 C 1.53780 * 87.08144 * 25.43415 * 22 21 10 24 24 H 0.97004 * 120.00036 * 359.97438 * 1 2 3 25 25 H 0.97006 * 119.99511 * 5.77436 * 9 7 2 26 26 H 1.08998 * 109.47270 * 71.31609 * 11 10 9 27 27 H 1.08997 * 109.47218 * 191.32027 * 11 10 9 28 28 H 0.97002 * 119.99847 * 355.67229 * 12 11 10 29 29 H 1.08004 * 120.49515 * 359.97438 * 16 15 13 30 30 H 1.07999 * 119.55211 * 180.23011 * 17 16 15 31 31 H 1.08003 * 119.54953 * 180.02562 * 19 18 17 32 32 H 1.08004 * 120.49545 * 180.02562 * 20 19 18 33 33 H 1.08995 * 113.61304 * 334.56417 * 21 10 9 34 34 H 1.08999 * 113.61335 * 203.66823 * 21 10 9 35 35 H 1.08994 * 113.61352 * 139.97875 * 22 21 10 36 36 H 1.09000 * 113.61184 * 270.88493 * 22 21 10 37 37 H 1.08998 * 113.62054 * 89.11420 * 23 22 21 38 38 H 1.09006 * 113.60977 * 219.93807 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4478 2.6526 0.7003 6 1 3.5478 1.4400 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0525 -3.6536 0.1266 11 6 2.9288 -3.9618 -1.0891 12 7 2.1452 -3.7825 -2.3139 13 6 2.7367 -3.9148 -3.5177 14 8 3.9200 -4.1823 -3.5871 15 6 1.9442 -3.7340 -4.7563 16 6 0.5803 -3.4317 -4.6989 17 6 -0.1196 -3.2673 -5.8786 18 7 0.4793 -3.4013 -7.0452 19 6 1.7616 -3.6902 -7.1440 20 6 2.5381 -3.8668 -6.0150 21 6 2.7848 -3.8111 1.4697 22 6 1.4901 -4.4388 2.0124 23 6 1.1658 -4.8324 0.5616 24 1 -0.4850 0.8401 0.0004 25 1 0.3592 -2.3901 -0.0847 26 1 3.7831 -3.2851 -1.1021 27 1 3.2816 -4.9914 -1.0310 28 1 1.2007 -3.5687 -2.2585 29 1 0.0820 -3.3254 -3.7466 30 1 -1.1726 -3.0300 -5.8446 31 1 2.2114 -3.7903 -8.1208 32 1 3.5882 -4.1030 -6.1035 33 1 3.0411 -2.8623 1.9411 34 1 3.6239 -4.5057 1.4307 35 1 1.6604 -5.2922 2.6686 36 1 0.7955 -3.7118 2.4333 37 1 1.5622 -5.8062 0.2743 38 1 0.1147 -4.7094 0.3004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724780060.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:12 Heat of formation + Delta-G solvation = 13.765331 kcal Electronic energy + Delta-G solvation = -21115.214268 eV Core-core repulsion = 17957.797066 eV Total energy + Delta-G solvation = -3157.417202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60894 -40.53679 -39.61035 -35.56502 -35.18465 -33.66407 -32.24789 -31.85977 -28.96678 -26.70769 -25.98162 -25.32999 -24.38845 -23.02850 -21.65605 -19.91458 -19.25392 -19.02585 -17.69899 -16.92490 -16.69736 -16.44836 -16.36768 -16.25227 -15.79722 -15.51150 -15.11270 -14.81246 -14.80911 -14.46844 -14.20693 -13.74619 -13.06209 -13.00329 -12.93930 -12.68340 -12.56094 -12.13611 -11.99321 -11.67810 -11.44726 -11.36814 -10.98905 -10.94184 -10.80918 -10.52485 -10.19956 -10.01655 -9.00615 -7.95139 -5.21695 -0.33986 0.09407 1.42710 1.45527 1.51111 1.82287 2.13562 2.53284 2.85427 3.36377 3.49574 3.54089 3.75611 3.78834 3.82305 3.94643 3.97301 4.07198 4.08195 4.21094 4.52783 4.60711 4.78557 4.80842 4.81929 4.89282 4.91937 4.98194 5.06423 5.13888 5.30262 5.39324 5.45951 5.59956 5.62547 5.71663 6.29136 6.49906 6.87815 7.10393 7.36144 8.08102 8.32992 9.26773 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.013729 B = 0.006082 C = 0.004928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.943795 B = 4602.731968 C = 5680.298780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.060 4.060 3 Si 0.950 3.050 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.219 4.219 8 H 0.062 0.938 9 N -0.702 5.702 10 C 0.157 3.843 11 C 0.126 3.874 12 N -0.687 5.687 13 C 0.547 3.453 14 O -0.579 6.579 15 C -0.101 4.101 16 C -0.138 4.138 17 C 0.095 3.905 18 N -0.488 5.488 19 C 0.096 3.904 20 C -0.125 4.125 21 C -0.149 4.149 22 C -0.121 4.121 23 C -0.127 4.127 24 H 0.250 0.750 25 H 0.379 0.621 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.408 0.592 29 H 0.149 0.851 30 H 0.188 0.812 31 H 0.194 0.806 32 H 0.149 0.851 33 H 0.045 0.955 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.106 0.894 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.273 -11.601 -6.845 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.254 4.254 3 Si 0.781 3.219 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.202 1.202 7 C -0.351 4.351 8 H 0.080 0.920 9 N -0.342 5.342 10 C 0.065 3.935 11 C 0.000 4.000 12 N -0.336 5.336 13 C 0.334 3.666 14 O -0.461 6.461 15 C -0.112 4.112 16 C -0.159 4.159 17 C -0.061 4.061 18 N -0.197 5.197 19 C -0.060 4.060 20 C -0.146 4.146 21 C -0.189 4.189 22 C -0.159 4.159 23 C -0.165 4.165 24 H 0.059 0.941 25 H 0.213 0.787 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.245 0.755 29 H 0.167 0.833 30 H 0.205 0.795 31 H 0.211 0.789 32 H 0.167 0.833 33 H 0.064 0.936 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.736 -11.538 -7.556 13.811 hybrid contribution 0.321 1.508 1.024 1.851 sum 1.057 -10.029 -6.532 12.015 Atomic orbital electron populations 1.69740 1.05828 1.25689 1.59534 1.25230 0.96120 0.99866 1.04136 0.85487 0.77968 0.81396 0.77002 1.22310 1.22185 1.20244 1.19205 0.90758 0.84857 1.40257 0.92007 1.42062 1.05627 0.99660 1.86866 1.21139 0.93591 0.87274 0.91458 1.21810 0.94261 0.99951 0.83996 1.45662 1.14320 1.68714 1.04890 1.18555 0.86685 0.77050 0.84267 1.90699 1.16730 1.50856 1.87815 1.20467 0.94886 1.01790 0.94072 1.22570 0.93304 0.98142 1.01878 1.23194 1.01732 0.94717 0.86457 1.67645 1.12160 1.10847 1.29085 1.23263 0.88967 0.94225 0.99560 1.22452 1.02546 0.97892 0.91674 1.23304 0.97806 1.00468 0.97288 1.22546 0.96946 1.00028 0.96371 1.23163 0.99663 0.97381 0.96298 0.94135 0.78740 0.94479 0.90371 0.75484 0.83332 0.79476 0.78910 0.83276 0.93563 0.88700 0.89690 0.92275 0.87563 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.33 13.07 21.65 0.28 -54.05 16 2 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 3 Si 0.95 45.34 29.55 68.60 2.03 47.37 16 4 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 7 C -0.22 -11.19 9.23 84.03 0.78 -10.41 16 8 H 0.06 3.23 7.83 -2.91 -0.02 3.21 16 9 N -0.70 -30.60 4.56 -300.97 -1.37 -31.98 16 10 C 0.16 5.35 0.91 4.13 0.00 5.35 16 11 C 0.13 4.31 5.06 86.38 0.44 4.74 16 12 N -0.69 -22.94 5.35 -465.69 -2.49 -25.43 16 13 C 0.55 19.09 7.80 86.88 0.68 19.77 16 14 O -0.58 -23.47 16.45 -3.74 -0.06 -23.53 16 15 C -0.10 -2.96 5.91 -19.88 -0.12 -3.08 16 16 C -0.14 -3.52 9.62 22.63 0.22 -3.30 16 17 C 0.10 2.17 11.17 84.67 0.95 3.12 16 18 N -0.49 -11.80 10.34 -196.00 -2.03 -13.83 16 19 C 0.10 2.08 11.17 84.67 0.95 3.03 16 20 C -0.12 -3.18 9.68 22.63 0.22 -2.96 16 21 C -0.15 -4.75 7.27 31.12 0.23 -4.52 16 22 C -0.12 -3.42 7.99 31.12 0.25 -3.17 16 23 C -0.13 -3.41 7.37 31.12 0.23 -3.18 16 24 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 25 H 0.38 17.60 7.89 -92.70 -0.73 16.87 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 2.35 7.94 -2.39 -0.02 2.34 16 28 H 0.41 12.94 6.25 -92.71 -0.58 12.36 16 29 H 0.15 3.50 6.54 -2.91 -0.02 3.48 16 30 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 32 H 0.15 3.61 7.74 -2.91 -0.02 3.59 16 33 H 0.05 1.75 7.79 -2.39 -0.02 1.73 16 34 H 0.09 2.52 8.10 -2.39 -0.02 2.50 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.11 2.29 7.96 -2.39 -0.02 2.27 16 38 H 0.07 1.81 8.10 -2.38 -0.02 1.79 16 Total: -1.00 -64.92 324.30 1.41 -63.51 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.23 Total: 35.35 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 5.28 Total: 2.58 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -5.61 Total: -125.28 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.06 Total: -23.53 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -64.92 1.41 -63.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724780060.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.276 kcal (2) G-P(sol) polarization free energy of solvation -64.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds