Wall clock time and date at job start Mon Mar 30 2020 02:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86791 * 120.00328 * 2 1 4 4 H 1.48498 * 109.47477 * 270.00091 * 3 2 1 5 5 H 1.48505 * 109.47021 * 30.00260 * 3 2 1 6 6 H 1.48507 * 109.47157 * 149.99943 * 3 2 1 7 7 C 1.38813 * 119.99479 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00098 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99850 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99813 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47478 * 324.99574 * 10 9 7 12 12 C 1.53004 * 109.46519 * 205.00036 * 10 9 7 13 13 N 1.46495 * 109.47642 * 55.00228 * 12 10 9 14 14 C 1.34771 * 120.00587 * 180.02562 * 13 12 10 15 15 O 1.21517 * 119.99478 * 359.97438 * 14 13 12 16 16 C 1.48147 * 120.00224 * 180.02562 * 14 13 12 17 17 C 1.39825 * 120.92026 * 179.97438 * 16 14 13 18 18 C 1.38145 * 118.99773 * 179.97438 * 17 16 14 19 19 N 1.31816 * 120.89947 * 0.02562 * 18 17 16 20 20 C 1.31811 * 122.04628 * 359.96367 * 19 18 17 21 21 C 1.38147 * 120.90067 * 0.03689 * 20 19 18 22 22 C 1.53001 * 109.47335 * 85.00220 * 10 9 7 23 23 C 1.52999 * 117.49901 * 8.74348 * 22 10 9 24 24 C 1.53004 * 117.49534 * 300.08530 * 22 10 9 25 25 H 0.97010 * 119.99656 * 359.97438 * 1 2 3 26 26 H 0.96994 * 119.99649 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.46969 * 294.99606 * 12 10 9 28 28 H 1.09007 * 109.46771 * 175.00104 * 12 10 9 29 29 H 0.97011 * 119.99520 * 359.97438 * 13 12 10 30 30 H 1.07998 * 120.49967 * 359.70209 * 17 16 14 31 31 H 1.08002 * 119.54839 * 179.97438 * 18 17 16 32 32 H 1.07996 * 119.54741 * 180.02562 * 20 19 18 33 33 H 1.07992 * 120.50125 * 179.97438 * 21 20 19 34 34 H 1.09000 * 115.55124 * 154.41397 * 22 10 9 35 35 H 1.09004 * 117.50013 * 0.02562 * 23 22 10 36 36 H 1.08993 * 117.50135 * 145.02222 * 23 22 10 37 37 H 1.08996 * 117.49195 * 214.97957 * 24 22 10 38 38 H 1.08996 * 117.49975 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2022 0.0005 8 1 1.4700 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1119 -2.4711 0.0000 11 1 3.5648 -3.2065 0.5899 12 6 5.4993 -2.2590 0.6091 13 7 5.3624 -1.6636 1.9406 14 6 6.4606 -1.3853 2.6706 15 8 7.5644 -1.6287 2.2245 16 6 6.3220 -0.7837 4.0173 17 6 7.4482 -0.4877 4.7913 18 6 7.2730 0.0733 6.0415 19 7 6.0660 0.3285 6.5058 20 6 4.9785 0.0653 5.8091 21 6 5.0615 -0.4961 4.5495 22 6 4.2575 -2.9760 -1.4369 23 6 3.8366 -2.0307 -2.5639 24 6 2.9736 -3.2483 -2.2235 25 1 -0.4850 0.8402 0.0004 26 1 3.8645 -0.3623 -0.0004 27 1 6.0783 -1.5918 -0.0295 28 1 6.0107 -3.2181 0.6908 29 1 4.4812 -1.4689 2.2965 30 1 8.4399 -0.6985 4.4192 31 1 8.1367 0.3052 6.6471 32 1 4.0094 0.2913 6.2287 33 1 4.1663 -0.7094 3.9844 34 1 5.1091 -3.6309 -1.6211 35 1 3.4563 -1.0489 -2.2817 36 1 4.4109 -2.0640 -3.4896 37 1 2.9809 -4.0822 -2.9253 38 1 2.0254 -3.0682 -1.7171 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731388411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:35 Heat of formation + Delta-G solvation = 43.811808 kcal Electronic energy + Delta-G solvation = -20925.006044 eV Core-core repulsion = 17768.891755 eV Total energy + Delta-G solvation = -3156.114289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60503 -39.09443 -37.77777 -34.78523 -33.44926 -32.78113 -31.46927 -31.06213 -28.71799 -25.12159 -23.70103 -23.22084 -22.49625 -21.59731 -20.55623 -19.40535 -18.45969 -17.46836 -16.68388 -15.82517 -15.61642 -15.41256 -15.29649 -14.90590 -14.65808 -14.04156 -13.92734 -13.87626 -13.43108 -13.12840 -12.87613 -12.56998 -11.84697 -11.67830 -11.28302 -11.05026 -10.88495 -10.65255 -10.31240 -10.27036 -10.02093 -9.68087 -9.65023 -9.55711 -9.35605 -9.29005 -9.10664 -8.92389 -7.46708 -5.91294 -3.28928 0.61262 0.94123 2.89251 3.17030 3.25177 3.29812 3.36830 3.75910 4.26615 4.44478 4.46344 4.53525 4.67876 4.84817 4.93722 5.11634 5.21448 5.35064 5.38016 5.58688 5.60601 5.66435 5.70240 5.77050 5.86460 5.87506 5.95963 6.18970 6.32143 6.42255 6.47342 6.52645 6.66293 6.94539 7.07601 7.59273 7.73957 7.84152 8.20757 8.26891 9.03928 9.76047 9.94851 11.26112 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016221 B = 0.005781 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.761798 B = 4842.546550 C = 6045.116015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.876 3.124 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.094 0.906 9 N -0.744 5.744 10 C 0.197 3.803 11 H 0.067 0.933 12 C 0.115 3.885 13 N -0.706 5.706 14 C 0.553 3.447 15 O -0.541 6.541 16 C -0.085 4.085 17 C -0.119 4.119 18 C 0.091 3.909 19 N -0.473 5.473 20 C 0.097 3.903 21 C -0.138 4.138 22 C -0.179 4.179 23 C -0.165 4.165 24 C -0.169 4.169 25 H 0.261 0.739 26 H 0.363 0.637 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.410 0.590 30 H 0.147 0.853 31 H 0.161 0.839 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.392 -2.947 6.746 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.184 4.184 3 Si 0.707 3.293 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.376 4.376 8 H 0.112 0.888 9 N -0.387 5.387 10 C 0.087 3.913 11 H 0.085 0.915 12 C -0.009 4.009 13 N -0.358 5.358 14 C 0.338 3.662 15 O -0.420 6.420 16 C -0.096 4.096 17 C -0.139 4.139 18 C -0.066 4.066 19 N -0.183 5.183 20 C -0.060 4.060 21 C -0.158 4.158 22 C -0.200 4.200 23 C -0.202 4.202 24 C -0.206 4.206 25 H 0.071 0.929 26 H 0.196 0.804 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.248 0.752 30 H 0.164 0.836 31 H 0.178 0.822 32 H 0.181 0.819 33 H 0.163 0.837 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.802 -2.826 7.230 14.126 hybrid contribution 0.157 0.993 -0.916 1.360 sum 11.959 -1.833 6.314 13.647 Atomic orbital electron populations 1.69684 1.05066 1.25931 1.56714 1.24634 0.95098 0.96939 1.01757 0.86700 0.79163 0.85434 0.78030 1.21040 1.21739 1.20386 1.19002 0.80208 0.94611 1.43823 0.88840 1.42864 1.04194 1.01748 1.89887 1.19974 0.89478 0.89567 0.92266 0.91493 1.21719 0.98765 0.98243 0.82184 1.45946 1.09353 1.62356 1.18126 1.18176 0.84761 0.78696 0.84540 1.90750 1.25683 1.53580 1.71937 1.20467 0.94366 0.99632 0.95107 1.22302 0.99772 0.97127 0.94721 1.22784 0.95191 0.95279 0.93355 1.67564 0.99042 1.15414 1.36237 1.22805 0.97597 0.94606 0.91003 1.22530 0.97827 0.98120 0.97352 1.22991 0.98432 1.03707 0.94908 1.22846 1.03212 0.97168 0.97001 1.22900 0.96376 0.98666 1.02652 0.92921 0.80373 0.91377 0.91039 0.75206 0.83570 0.82153 0.81911 0.83696 0.89275 0.87231 0.91033 0.90805 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.92 13.97 55.49 0.78 -26.14 16 2 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 3 Si 0.88 20.52 27.73 -169.99 -4.71 15.81 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.11 6.52 56.52 0.37 -5.75 16 7 C -0.25 -6.01 8.64 -15.06 -0.13 -6.14 16 8 H 0.09 2.48 7.14 -52.48 -0.37 2.10 16 9 N -0.74 -14.94 2.88 -53.42 -0.15 -15.09 16 10 C 0.20 3.30 2.86 -67.93 -0.19 3.10 16 11 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 12 C 0.11 1.74 5.21 -4.04 -0.02 1.72 16 13 N -0.71 -10.59 5.35 -61.15 -0.33 -10.92 16 14 C 0.55 8.58 7.80 -12.19 -0.10 8.49 16 15 O -0.54 -9.75 16.45 5.35 0.09 -9.66 16 16 C -0.08 -1.14 5.91 -104.64 -0.62 -1.76 16 17 C -0.12 -1.41 9.68 -39.02 -0.38 -1.79 16 18 C 0.09 0.98 11.17 -17.59 -0.20 0.78 16 19 N -0.47 -5.81 10.34 -13.31 -0.14 -5.95 16 20 C 0.10 1.11 11.17 -17.59 -0.20 0.92 16 21 C -0.14 -1.68 9.62 -39.02 -0.38 -2.06 16 22 C -0.18 -2.87 5.71 -90.62 -0.52 -3.38 16 23 C -0.17 -2.87 9.74 -26.69 -0.26 -3.13 16 24 C -0.17 -2.90 9.87 -26.69 -0.26 -3.16 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.36 7.51 5.66 -40.82 -0.23 7.28 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 29 H 0.41 6.03 6.28 -40.82 -0.26 5.78 16 30 H 0.15 1.60 7.74 -52.49 -0.41 1.20 16 31 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.15 1.64 6.54 -52.49 -0.34 1.30 16 34 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 35 H 0.11 2.23 6.69 -51.93 -0.35 1.88 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.11 2.19 6.22 -51.93 -0.32 1.87 16 LS Contribution 319.78 15.07 4.82 4.82 Total: -1.00 -29.86 319.78 -7.82 -37.68 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -4.83 Total: 15.63 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -3.34 Total: -6.18 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: 0.16 Total: -58.10 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.71 Total: 15.81 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.86 -7.82 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731388411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.491 kcal (2) G-P(sol) polarization free energy of solvation -29.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds