Wall clock time and date at job start Mon Mar 30 2020 02:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00011 * 2 1 4 4 H 1.48500 * 109.47527 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47683 * 300.00569 * 3 2 1 6 6 H 1.48504 * 109.46944 * 60.00577 * 3 2 1 7 7 C 1.38810 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99992 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00064 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46967 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.91829 * 57.44735 * 11 10 9 13 13 C 1.55165 * 111.00217 * 181.34732 * 11 10 9 14 14 C 1.54328 * 102.94026 * 153.57603 * 13 11 10 15 15 N 1.47018 * 107.26927 * 337.80638 * 14 13 11 16 16 C 1.34780 * 125.64782 * 179.21349 * 15 14 13 17 17 O 1.21511 * 120.00378 * 174.86026 * 16 15 14 18 18 C 1.48149 * 119.99505 * 354.85128 * 16 15 14 19 19 C 1.39816 * 120.92795 * 7.29041 * 18 16 15 20 20 C 1.38145 * 119.00760 * 179.75171 * 19 18 16 21 21 N 1.31818 * 120.89159 * 0.53225 * 20 19 18 22 22 C 1.31808 * 122.04869 * 359.73353 * 21 20 19 23 23 C 1.38151 * 120.89879 * 359.97438 * 22 21 20 24 24 C 1.47429 * 108.70813 * 358.94214 * 15 14 13 25 25 H 0.97005 * 120.00083 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00169 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47503 * 59.99518 * 10 9 7 28 28 H 1.09009 * 109.46578 * 300.00049 * 10 9 7 29 29 H 1.09000 * 110.72172 * 271.93763 * 13 11 10 30 30 H 1.08995 * 110.72029 * 35.21205 * 13 11 10 31 31 H 1.09001 * 109.87399 * 218.39082 * 14 13 11 32 32 H 1.08998 * 109.87901 * 97.22548 * 14 13 11 33 33 H 1.08003 * 120.49542 * 359.97438 * 19 18 16 34 34 H 1.07998 * 119.55589 * 180.27057 * 20 19 18 35 35 H 1.08001 * 119.55241 * 179.97438 * 22 21 20 36 36 H 1.07999 * 120.49796 * 180.02562 * 23 22 21 37 37 H 1.08997 * 110.36769 * 142.97053 * 24 15 14 38 38 H 1.09002 * 110.36733 * 265.18043 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3948 -4.7592 -0.8596 13 6 1.8031 -6.1834 0.0329 14 6 0.7715 -7.1192 0.6976 15 7 -0.1565 -6.2731 1.4619 16 6 -1.2129 -6.7111 2.1752 17 8 -1.8592 -5.9305 2.8455 18 6 -1.5861 -8.1444 2.1417 19 6 -0.7722 -9.0841 1.5018 20 6 -1.1558 -10.4113 1.4991 21 7 -2.2761 -10.7931 2.0795 22 6 -3.0744 -9.9395 2.6888 23 6 -2.7648 -8.5942 2.7444 24 6 0.2634 -4.8666 1.3243 25 1 -0.4850 0.8401 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6847 -3.7146 0.8893 28 1 2.6847 -3.7144 -0.8906 29 1 2.0357 -6.5213 -0.9770 30 1 2.7082 -6.1165 0.6364 31 1 1.2786 -7.8129 1.3683 32 1 0.2255 -7.6717 -0.0670 33 1 0.1444 -8.7776 1.0200 34 1 -0.5316 -11.1452 1.0113 35 1 -3.9830 -10.2964 3.1508 36 1 -3.4235 -7.9005 3.2457 37 1 -0.6080 -4.2146 1.2646 38 1 0.8969 -4.5761 2.1624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731650404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:49 Heat of formation + Delta-G solvation = 37.164883 kcal Electronic energy + Delta-G solvation = -20545.051163 eV Core-core repulsion = 17388.648642 eV Total energy + Delta-G solvation = -3156.402522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97774 -39.47122 -37.69720 -34.86691 -33.21214 -32.10929 -31.49362 -30.52524 -28.84340 -26.18196 -24.76801 -23.64456 -23.14932 -22.03861 -20.40540 -19.98908 -17.92895 -17.03817 -16.81246 -16.28165 -16.10180 -15.47605 -15.08673 -14.68492 -14.40790 -14.00065 -13.97776 -13.79434 -13.43270 -13.21141 -12.80539 -12.64480 -12.45415 -11.97116 -11.60155 -11.23993 -10.90470 -10.69402 -10.67898 -10.51937 -10.31343 -10.13404 -10.01189 -9.71663 -9.65272 -9.50051 -8.91235 -8.71376 -6.95947 -5.78139 -3.07949 0.48317 0.79143 2.73845 2.80080 3.42693 3.47907 3.50553 3.59814 4.09061 4.12967 4.40916 4.47194 4.56332 4.68788 4.75962 4.81503 4.83380 5.13861 5.22439 5.25130 5.43853 5.49322 5.53088 5.56728 5.75194 5.78291 5.88108 5.89948 6.02798 6.15117 6.28819 6.32304 6.35218 6.62678 6.75899 7.38072 7.59571 7.68290 7.99756 8.39836 9.51305 10.07495 10.41615 11.44508 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038514 B = 0.003377 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.827126 B = 8288.900579 C = 8873.212327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.165 3.835 11 C -0.105 4.105 12 H 0.086 0.914 13 C -0.128 4.128 14 C 0.089 3.911 15 N -0.608 5.608 16 C 0.566 3.434 17 O -0.526 6.526 18 C -0.079 4.079 19 C -0.177 4.177 20 C 0.093 3.907 21 N -0.474 5.474 22 C 0.093 3.907 23 C -0.117 4.117 24 C 0.116 3.884 25 H 0.255 0.745 26 H 0.384 0.616 27 H 0.023 0.977 28 H 0.025 0.975 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.148 0.852 37 H 0.086 0.914 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -22.116 1.598 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.104 0.896 13 C -0.166 4.166 14 C -0.034 4.034 15 N -0.342 5.342 16 C 0.354 3.646 17 O -0.402 6.402 18 C -0.090 4.090 19 C -0.196 4.196 20 C -0.064 4.064 21 N -0.184 5.184 22 C -0.063 4.063 23 C -0.138 4.138 24 C -0.005 4.005 25 H 0.065 0.935 26 H 0.218 0.782 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.186 0.814 34 H 0.178 0.822 35 H 0.180 0.820 36 H 0.166 0.834 37 H 0.104 0.896 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.764 -22.451 1.988 22.552 hybrid contribution 0.345 1.817 0.006 1.849 sum -0.420 -20.635 1.994 20.735 Atomic orbital electron populations 1.69670 1.05127 1.25643 1.57489 1.24760 0.95524 0.97769 1.02849 0.86117 0.78748 0.84093 0.77204 1.20549 1.21858 1.21831 1.19246 0.91045 0.84080 1.42976 0.91079 1.42374 1.05916 0.99947 1.89574 1.20587 0.92673 0.84749 0.98289 1.22601 0.97878 0.94838 0.97170 0.89575 1.22739 0.97765 0.94647 1.01485 1.22569 0.91444 0.94263 0.95111 1.48447 1.27263 1.09699 1.48768 1.17858 0.79808 0.87188 0.79702 1.90818 1.52239 1.56463 1.40703 1.20386 0.96143 0.93734 0.98746 1.23689 1.02339 0.94442 0.99136 1.22810 0.93257 0.94299 0.96027 1.67537 1.04290 1.39338 1.07230 1.22798 0.98626 0.89114 0.95785 1.22357 0.96226 0.97538 0.97656 1.22408 0.99882 0.80343 0.97903 0.93482 0.78203 0.95969 0.95699 0.89620 0.89984 0.90530 0.90429 0.81353 0.82181 0.82040 0.83442 0.89590 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.10 5.45 -59.91 -0.33 -18.43 16 10 C 0.17 3.07 5.71 -4.04 -0.02 3.05 16 11 C -0.11 -1.54 3.10 -88.47 -0.27 -1.81 16 12 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.13 -1.28 6.42 -24.89 -0.16 -1.44 16 14 C 0.09 0.82 4.88 -3.06 -0.01 0.81 16 15 N -0.61 -8.30 3.33 -171.76 -0.57 -8.88 16 16 C 0.57 8.56 7.83 -12.19 -0.10 8.46 16 17 O -0.53 -10.00 16.77 5.36 0.09 -9.91 16 18 C -0.08 -0.94 5.91 -104.65 -0.62 -1.56 16 19 C -0.18 -1.60 8.68 -39.03 -0.34 -1.94 16 20 C 0.09 0.80 11.17 -17.59 -0.20 0.60 16 21 N -0.47 -4.88 10.34 -13.31 -0.14 -5.02 16 22 C 0.09 0.88 11.17 -17.59 -0.20 0.69 16 23 C -0.12 -1.28 9.68 -39.02 -0.38 -1.65 16 24 C 0.12 1.86 6.06 -2.53 -0.02 1.85 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.38 10.07 7.53 -40.82 -0.31 9.76 16 27 H 0.02 0.42 8.10 -51.93 -0.42 0.00 16 28 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 31 H 0.08 0.56 6.83 -51.93 -0.35 0.20 16 32 H 0.08 0.60 6.67 -51.93 -0.35 0.25 16 33 H 0.17 1.16 2.96 -52.79 -0.16 1.00 16 34 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.15 1.56 7.76 -52.49 -0.41 1.15 16 37 H 0.09 1.63 8.09 -51.93 -0.42 1.21 16 38 H 0.08 1.28 8.01 -51.93 -0.42 0.86 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -34.18 316.61 -7.94 -42.12 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.91 Total: 5.81 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -2.56 Total: -0.27 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.31 Total: -59.85 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.18 -7.94 -42.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731650404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.285 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds