Wall clock time and date at job start Mon Mar 30 2020 02:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00011 * 2 1 4 4 H 1.48500 * 109.47527 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47683 * 300.00569 * 3 2 1 6 6 H 1.48504 * 109.46944 * 60.00577 * 3 2 1 7 7 C 1.38810 * 120.00011 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99992 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00064 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46967 * 180.02562 * 10 9 7 12 12 H 1.08999 * 110.91829 * 57.44735 * 11 10 9 13 13 C 1.55165 * 111.00217 * 181.34732 * 11 10 9 14 14 C 1.54328 * 102.94026 * 153.57603 * 13 11 10 15 15 N 1.47018 * 107.26927 * 337.80638 * 14 13 11 16 16 C 1.34780 * 125.64782 * 179.21349 * 15 14 13 17 17 O 1.21511 * 120.00378 * 174.86026 * 16 15 14 18 18 C 1.48149 * 119.99505 * 354.85128 * 16 15 14 19 19 C 1.39816 * 120.92795 * 7.29041 * 18 16 15 20 20 C 1.38145 * 119.00760 * 179.75171 * 19 18 16 21 21 N 1.31818 * 120.89159 * 0.53225 * 20 19 18 22 22 C 1.31808 * 122.04869 * 359.73353 * 21 20 19 23 23 C 1.38151 * 120.89879 * 359.97438 * 22 21 20 24 24 C 1.47429 * 108.70813 * 358.94214 * 15 14 13 25 25 H 0.97005 * 120.00083 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00169 * 0.02562 * 9 7 2 27 27 H 1.08994 * 109.47503 * 59.99518 * 10 9 7 28 28 H 1.09009 * 109.46578 * 300.00049 * 10 9 7 29 29 H 1.09000 * 110.72172 * 271.93763 * 13 11 10 30 30 H 1.08995 * 110.72029 * 35.21205 * 13 11 10 31 31 H 1.09001 * 109.87399 * 218.39082 * 14 13 11 32 32 H 1.08998 * 109.87901 * 97.22548 * 14 13 11 33 33 H 1.08003 * 120.49542 * 359.97438 * 19 18 16 34 34 H 1.07998 * 119.55589 * 180.27057 * 20 19 18 35 35 H 1.08001 * 119.55241 * 179.97438 * 22 21 20 36 36 H 1.07999 * 120.49796 * 180.02562 * 23 22 21 37 37 H 1.08997 * 110.36769 * 142.97053 * 24 15 14 38 38 H 1.09002 * 110.36733 * 265.18043 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3948 -4.7592 -0.8596 13 6 1.8031 -6.1834 0.0329 14 6 0.7715 -7.1192 0.6976 15 7 -0.1565 -6.2731 1.4619 16 6 -1.2129 -6.7111 2.1752 17 8 -1.8592 -5.9305 2.8455 18 6 -1.5861 -8.1444 2.1417 19 6 -0.7722 -9.0841 1.5018 20 6 -1.1558 -10.4113 1.4991 21 7 -2.2761 -10.7931 2.0795 22 6 -3.0744 -9.9395 2.6888 23 6 -2.7648 -8.5942 2.7444 24 6 0.2634 -4.8666 1.3243 25 1 -0.4850 0.8401 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6847 -3.7146 0.8893 28 1 2.6847 -3.7144 -0.8906 29 1 2.0357 -6.5213 -0.9770 30 1 2.7082 -6.1165 0.6364 31 1 1.2786 -7.8129 1.3683 32 1 0.2255 -7.6717 -0.0670 33 1 0.1444 -8.7776 1.0200 34 1 -0.5316 -11.1452 1.0113 35 1 -3.9830 -10.2964 3.1508 36 1 -3.4235 -7.9005 3.2457 37 1 -0.6080 -4.2146 1.2646 38 1 0.8969 -4.5761 2.1624 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731650404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:48 Heat of formation + Delta-G solvation = 12.812100 kcal Electronic energy + Delta-G solvation = -20546.107179 eV Core-core repulsion = 17388.648642 eV Total energy + Delta-G solvation = -3157.458538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.91269 -40.40071 -38.90739 -36.55246 -34.45101 -33.40907 -32.34036 -31.95343 -30.08522 -27.56839 -26.10216 -24.59876 -24.39447 -23.26666 -21.51567 -21.13423 -19.26721 -18.66404 -17.81133 -17.31737 -16.95956 -16.56902 -16.46516 -16.06220 -15.45333 -15.29728 -15.12439 -14.85229 -14.68139 -14.61470 -14.05424 -13.92535 -13.54545 -13.16711 -13.07557 -12.78412 -12.53347 -12.14665 -12.08683 -11.82338 -11.64804 -11.58888 -11.43695 -10.99675 -10.96326 -10.46330 -10.20824 -9.82478 -9.00891 -7.95857 -5.25121 -0.37485 0.09152 1.46720 1.47813 1.57832 1.67165 1.74850 2.55293 2.82453 3.16743 3.38277 3.48153 3.54036 3.58862 3.85343 3.86974 3.95294 4.05332 4.18256 4.22068 4.37772 4.47473 4.53619 4.65041 4.76351 4.76710 4.80684 4.83699 4.94663 5.03192 5.06214 5.17170 5.23742 5.41159 5.50069 5.60860 6.26079 6.31465 6.86275 6.89155 7.32147 8.08811 8.29484 9.28043 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.038514 B = 0.003377 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.827126 B = 8288.900579 C = 8873.212327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.297 1.297 7 C -0.242 4.242 8 H 0.081 0.919 9 N -0.750 5.750 10 C 0.162 3.838 11 C -0.097 4.097 12 H 0.079 0.921 13 C -0.113 4.113 14 C 0.081 3.919 15 N -0.606 5.606 16 C 0.558 3.442 17 O -0.584 6.584 18 C -0.099 4.099 19 C -0.164 4.164 20 C 0.098 3.902 21 N -0.490 5.490 22 C 0.096 3.904 23 C -0.132 4.132 24 C 0.119 3.881 25 H 0.250 0.750 26 H 0.371 0.629 27 H 0.027 0.973 28 H 0.038 0.962 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.196 0.804 34 H 0.199 0.801 35 H 0.187 0.813 36 H 0.138 0.862 37 H 0.042 0.958 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -25.072 0.501 25.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.221 1.221 6 H -0.224 1.224 7 C -0.374 4.374 8 H 0.099 0.901 9 N -0.393 5.393 10 C 0.036 3.964 11 C -0.117 4.117 12 H 0.097 0.903 13 C -0.151 4.151 14 C -0.040 4.040 15 N -0.338 5.338 16 C 0.348 3.652 17 O -0.464 6.464 18 C -0.110 4.110 19 C -0.183 4.183 20 C -0.059 4.059 21 N -0.199 5.199 22 C -0.060 4.060 23 C -0.153 4.153 24 C -0.004 4.004 25 H 0.059 0.941 26 H 0.203 0.797 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.136 0.864 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.123 0.877 33 H 0.212 0.788 34 H 0.216 0.784 35 H 0.204 0.796 36 H 0.156 0.844 37 H 0.061 0.939 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.578 -25.474 0.868 25.537 hybrid contribution -0.321 2.638 0.346 2.680 sum 1.257 -22.835 1.214 22.902 Atomic orbital electron populations 1.69842 1.06805 1.25948 1.59749 1.25618 0.96357 1.01354 1.03879 0.85056 0.78403 0.79708 0.76497 1.18586 1.22068 1.22436 1.19706 0.91652 0.85262 1.40741 0.90131 1.42661 1.05633 1.01517 1.89452 1.20793 0.93329 0.83637 0.98628 1.22428 0.97269 0.96342 0.95623 0.90262 1.22773 0.97576 0.90990 1.03786 1.22990 0.90877 0.94104 0.95993 1.48508 1.27546 1.09167 1.48600 1.18489 0.79402 0.88390 0.78884 1.90777 1.54172 1.58221 1.43277 1.20260 0.97592 0.92114 1.01020 1.23924 1.02420 0.93974 0.97976 1.23459 0.92827 0.94747 0.94871 1.67633 1.05091 1.39588 1.07627 1.23126 0.99341 0.88194 0.95337 1.22418 0.96303 0.98311 0.98280 1.22141 0.98102 0.81619 0.98520 0.94144 0.79734 0.95550 0.94420 0.86414 0.88836 0.87192 0.87688 0.78814 0.78389 0.79647 0.84439 0.93936 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.02 13.06 21.65 0.28 -60.74 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 7 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.75 -37.71 5.45 -343.45 -1.87 -39.58 16 10 C 0.16 5.92 5.71 86.38 0.49 6.41 16 11 C -0.10 -2.74 3.10 -9.40 -0.03 -2.77 16 12 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.11 -1.80 6.42 31.79 0.20 -1.60 16 14 C 0.08 1.19 4.88 86.73 0.42 1.61 16 15 N -0.61 -16.25 3.33 -815.60 -2.71 -18.96 16 16 C 0.56 17.31 7.83 86.88 0.68 17.99 16 17 O -0.58 -23.95 16.77 -3.75 -0.06 -24.01 16 18 C -0.10 -2.28 5.91 -19.88 -0.12 -2.39 16 19 C -0.16 -2.40 8.68 22.63 0.20 -2.21 16 20 C 0.10 1.29 11.17 84.67 0.95 2.23 16 21 N -0.49 -8.68 10.34 -196.01 -2.03 -10.71 16 22 C 0.10 1.67 11.17 84.68 0.95 2.61 16 23 C -0.13 -2.88 9.68 22.63 0.22 -2.66 16 24 C 0.12 3.97 6.06 86.85 0.53 4.50 16 25 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 26 H 0.37 20.35 7.53 -92.71 -0.70 19.66 16 27 H 0.03 0.96 8.10 -2.39 -0.02 0.94 16 28 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.34 8.04 -2.39 -0.02 1.32 16 31 H 0.11 0.99 6.83 -2.39 -0.02 0.98 16 32 H 0.11 1.06 6.67 -2.39 -0.02 1.05 16 33 H 0.20 1.66 2.96 -3.20 -0.01 1.65 16 34 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 36 H 0.14 3.16 7.76 -2.91 -0.02 3.14 16 37 H 0.04 1.76 8.09 -2.39 -0.02 1.74 16 38 H 0.06 2.17 8.01 -2.39 -0.02 2.15 16 Total: -1.00 -78.85 316.61 1.81 -77.03 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.38 Total: 21.47 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 5.79 Total: 6.92 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -6.33 Total: -129.99 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.06 Total: -24.01 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -78.85 1.81 -77.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731650404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.847 kcal (2) G-P(sol) polarization free energy of solvation -78.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds