Wall clock time and date at job start Mon Mar 30 2020 02:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00075 * 2 1 4 4 H 1.48507 * 109.47052 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47166 * 119.99977 * 3 2 1 6 6 H 1.48503 * 109.47273 * 240.00364 * 3 2 1 7 7 C 1.38814 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00260 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99849 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47253 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.88393 * 308.88675 * 11 10 9 13 13 C 1.55154 * 111.00508 * 185.00046 * 11 10 9 14 14 C 1.54323 * 102.94358 * 206.42579 * 13 11 10 15 15 N 1.47024 * 107.26760 * 22.19738 * 14 13 11 16 16 C 1.34783 * 125.64680 * 181.10865 * 15 14 13 17 17 O 1.21503 * 120.00132 * 174.49386 * 16 15 14 18 18 C 1.48147 * 119.99700 * 354.49283 * 16 15 14 19 19 C 1.39819 * 120.92308 * 6.59185 * 18 16 15 20 20 C 1.38152 * 118.99777 * 179.79745 * 19 18 16 21 21 N 1.31814 * 120.89841 * 0.48797 * 20 19 18 22 22 C 1.31809 * 122.04899 * 359.73509 * 21 20 19 23 23 C 1.38155 * 120.89486 * 0.02798 * 22 21 20 24 24 C 1.47419 * 108.70490 * 1.05421 * 15 14 13 25 25 H 0.97000 * 119.99964 * 179.97438 * 1 2 3 26 26 H 0.96996 * 120.00466 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47507 * 299.99995 * 10 9 7 28 28 H 1.09000 * 109.47179 * 59.99845 * 10 9 7 29 29 H 1.09003 * 110.71962 * 324.79008 * 13 11 10 30 30 H 1.08995 * 110.72051 * 88.05940 * 13 11 10 31 31 H 1.08997 * 109.88380 * 141.60831 * 14 13 11 32 32 H 1.08996 * 109.88306 * 262.77813 * 14 13 11 33 33 H 1.07996 * 120.50333 * 359.97438 * 19 18 16 34 34 H 1.08004 * 119.54889 * 180.22817 * 20 19 18 35 35 H 1.08000 * 119.55245 * 179.97438 * 22 21 20 36 36 H 1.07996 * 120.49676 * 179.97438 * 23 22 21 37 37 H 1.09001 * 110.36986 * 217.03809 * 24 15 14 38 38 H 1.09002 * 110.36528 * 94.71731 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6965 -1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3257 -4.6994 0.7941 13 6 1.7993 -6.1801 0.1275 14 6 0.8246 -7.1644 -0.5527 15 7 -0.0334 -6.3782 -1.4512 16 6 -1.0314 -6.8687 -2.2129 17 8 -1.7424 -6.1120 -2.8438 18 6 -1.2612 -8.3307 -2.2808 19 6 -0.5468 -9.2092 -1.4605 20 6 -0.7960 -10.5649 -1.5538 21 7 -1.6852 -11.0325 -2.4072 22 6 -2.3767 -10.2398 -3.2014 23 6 -2.1945 -8.8706 -3.1709 24 6 0.3776 -4.9642 -1.3801 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3881 0.0005 27 1 2.6848 -3.7145 -0.8894 28 1 2.6848 -3.7145 0.8905 29 1 2.7522 -6.1538 -0.4011 30 1 1.9453 -6.4437 1.1749 31 1 1.3841 -7.9029 -1.1268 32 1 0.2145 -7.6622 0.2009 33 1 0.1867 -8.8335 -0.7626 34 1 -0.2520 -11.2512 -0.9218 35 1 -3.0950 -10.6664 -3.8859 36 1 -2.7643 -8.2272 -3.8247 37 1 -0.4938 -4.3122 -1.4407 38 1 1.0817 -4.7332 -2.1795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731650405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:52 Heat of formation + Delta-G solvation = 37.800780 kcal Electronic energy + Delta-G solvation = -20556.664453 eV Core-core repulsion = 17400.289505 eV Total energy + Delta-G solvation = -3156.374947 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04024 -39.53972 -37.78081 -35.10096 -33.34987 -32.21923 -31.54481 -30.48034 -28.81296 -26.12411 -24.62671 -23.66960 -23.17385 -22.22075 -20.47795 -20.12643 -18.00059 -17.20797 -16.89820 -16.30192 -16.23165 -15.54548 -15.18391 -14.71929 -14.36672 -14.09751 -14.07409 -13.86820 -13.66624 -13.26198 -13.02668 -12.73420 -12.53963 -12.10253 -11.66624 -11.07094 -10.90789 -10.73110 -10.63450 -10.48844 -10.37725 -10.18903 -9.98265 -9.70986 -9.54487 -9.18778 -8.91378 -8.79744 -7.04121 -6.11749 -3.12520 0.42976 0.74669 2.67691 2.71774 3.50979 3.54741 3.54908 3.72427 4.02844 4.08089 4.34755 4.42268 4.57951 4.64935 4.72841 4.74633 4.77603 5.05435 5.16091 5.19109 5.38302 5.40999 5.47816 5.59713 5.69546 5.71397 5.79255 5.80262 5.85721 6.04808 6.16362 6.21160 6.27377 6.54984 6.66337 7.29775 7.55338 7.77954 7.92044 8.74102 9.20081 10.06535 10.20529 11.36596 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040531 B = 0.003324 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.668249 B = 8421.164261 C = 8972.837365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.335 4.335 8 H 0.065 0.935 9 N -0.744 5.744 10 C 0.171 3.829 11 C -0.107 4.107 12 H 0.086 0.914 13 C -0.127 4.127 14 C 0.089 3.911 15 N -0.609 5.609 16 C 0.567 3.433 17 O -0.526 6.526 18 C -0.080 4.080 19 C -0.177 4.177 20 C 0.093 3.907 21 N -0.474 5.474 22 C 0.094 3.906 23 C -0.117 4.117 24 C 0.114 3.886 25 H 0.255 0.745 26 H 0.367 0.633 27 H 0.023 0.977 28 H 0.026 0.974 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.084 0.916 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.843 -22.484 -1.825 22.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.466 4.466 8 H 0.083 0.917 9 N -0.390 5.390 10 C 0.043 3.957 11 C -0.127 4.127 12 H 0.104 0.896 13 C -0.166 4.166 14 C -0.034 4.034 15 N -0.342 5.342 16 C 0.355 3.645 17 O -0.403 6.403 18 C -0.091 4.091 19 C -0.196 4.196 20 C -0.063 4.063 21 N -0.183 5.183 22 C -0.063 4.063 23 C -0.138 4.138 24 C -0.007 4.007 25 H 0.066 0.934 26 H 0.200 0.800 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.187 0.813 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.166 0.834 37 H 0.103 0.897 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.342 -21.308 -2.264 21.431 hybrid contribution 0.082 -0.848 0.052 0.854 sum 0.424 -22.157 -2.212 22.271 Atomic orbital electron populations 1.70882 1.06054 1.28472 1.53285 1.25802 0.97047 1.01067 1.00286 0.83238 0.74215 0.75579 0.75842 1.20998 1.22246 1.22240 1.20004 0.92012 0.85767 1.48840 0.91721 1.42378 1.04903 1.00928 1.90824 1.20519 0.92561 0.84232 0.98406 1.22627 0.98572 0.95007 0.96477 0.89614 1.22729 0.98298 0.94092 1.01450 1.22572 0.92858 0.95061 0.92874 1.48425 1.32722 1.10355 1.42719 1.17873 0.79811 0.87286 0.79493 1.90814 1.45730 1.59232 1.44481 1.20367 0.97569 0.93516 0.97634 1.23703 1.00742 0.94964 1.00221 1.22820 0.94544 0.93401 0.95578 1.67541 1.05606 1.40768 1.04409 1.22807 0.97288 0.89665 0.96519 1.22356 0.96738 0.96841 0.97823 1.22424 1.00180 0.80264 0.97816 0.93363 0.79953 0.95874 0.95608 0.89937 0.89543 0.90384 0.90399 0.81340 0.82140 0.81997 0.83439 0.89733 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.40 13.70 55.49 0.76 -28.64 16 2 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 3 Si 1.08 25.96 29.92 -169.99 -5.09 20.88 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.30 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.34 -9.45 9.99 -15.06 -0.15 -9.60 16 8 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.74 -18.48 5.55 -59.91 -0.33 -18.81 16 10 C 0.17 3.23 5.72 -4.04 -0.02 3.21 16 11 C -0.11 -1.57 3.05 -88.47 -0.27 -1.84 16 12 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.13 -1.27 6.42 -24.90 -0.16 -1.43 16 14 C 0.09 0.82 4.88 -3.06 -0.01 0.80 16 15 N -0.61 -8.18 3.33 -171.86 -0.57 -8.75 16 16 C 0.57 8.43 7.83 -12.19 -0.10 8.33 16 17 O -0.53 -9.86 16.70 5.36 0.09 -9.77 16 18 C -0.08 -0.94 5.91 -104.65 -0.62 -1.55 16 19 C -0.18 -1.58 8.70 -39.02 -0.34 -1.92 16 20 C 0.09 0.79 11.17 -17.59 -0.20 0.59 16 21 N -0.47 -4.79 10.33 -13.30 -0.14 -4.93 16 22 C 0.09 0.87 11.17 -17.59 -0.20 0.67 16 23 C -0.12 -1.25 9.68 -39.02 -0.38 -1.63 16 24 C 0.11 1.81 6.35 -2.53 -0.02 1.79 16 25 H 0.26 7.86 6.77 -40.82 -0.28 7.58 16 26 H 0.37 9.40 6.50 -40.82 -0.27 9.14 16 27 H 0.02 0.45 7.96 -51.93 -0.41 0.03 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.56 6.75 -51.93 -0.35 0.21 16 32 H 0.08 0.59 6.77 -51.93 -0.35 0.23 16 33 H 0.17 1.14 2.94 -52.93 -0.16 0.98 16 34 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.15 1.52 7.76 -52.49 -0.41 1.12 16 37 H 0.08 1.56 7.99 -51.93 -0.41 1.15 16 38 H 0.08 1.23 7.91 -51.93 -0.41 0.82 16 LS Contribution 314.95 15.07 4.75 4.75 Total: -1.00 -35.35 314.95 -7.87 -43.22 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.78 Total: 6.02 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -2.55 Total: -3.96 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -0.28 Total: -61.13 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -5.09 Total: 20.88 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.35 -7.87 -43.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731650405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.016 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds