Wall clock time and date at job start Mon Mar 30 2020 02:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00075 * 2 1 4 4 H 1.48507 * 109.47052 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47166 * 119.99977 * 3 2 1 6 6 H 1.48503 * 109.47273 * 240.00364 * 3 2 1 7 7 C 1.38814 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00260 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99849 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47253 * 179.97438 * 10 9 7 12 12 H 1.08996 * 110.88393 * 308.88675 * 11 10 9 13 13 C 1.55154 * 111.00508 * 185.00046 * 11 10 9 14 14 C 1.54323 * 102.94358 * 206.42579 * 13 11 10 15 15 N 1.47024 * 107.26760 * 22.19738 * 14 13 11 16 16 C 1.34783 * 125.64680 * 181.10865 * 15 14 13 17 17 O 1.21503 * 120.00132 * 174.49386 * 16 15 14 18 18 C 1.48147 * 119.99700 * 354.49283 * 16 15 14 19 19 C 1.39819 * 120.92308 * 6.59185 * 18 16 15 20 20 C 1.38152 * 118.99777 * 179.79745 * 19 18 16 21 21 N 1.31814 * 120.89841 * 0.48797 * 20 19 18 22 22 C 1.31809 * 122.04899 * 359.73509 * 21 20 19 23 23 C 1.38155 * 120.89486 * 0.02798 * 22 21 20 24 24 C 1.47419 * 108.70490 * 1.05421 * 15 14 13 25 25 H 0.97000 * 119.99964 * 179.97438 * 1 2 3 26 26 H 0.96996 * 120.00466 * 359.97438 * 9 7 2 27 27 H 1.09001 * 109.47507 * 299.99995 * 10 9 7 28 28 H 1.09000 * 109.47179 * 59.99845 * 10 9 7 29 29 H 1.09003 * 110.71962 * 324.79008 * 13 11 10 30 30 H 1.08995 * 110.72051 * 88.05940 * 13 11 10 31 31 H 1.08997 * 109.88380 * 141.60831 * 14 13 11 32 32 H 1.08996 * 109.88306 * 262.77813 * 14 13 11 33 33 H 1.07996 * 120.50333 * 359.97438 * 19 18 16 34 34 H 1.08004 * 119.54889 * 180.22817 * 20 19 18 35 35 H 1.08000 * 119.55245 * 179.97438 * 22 21 20 36 36 H 1.07996 * 120.49676 * 179.97438 * 23 22 21 37 37 H 1.09001 * 110.36986 * 217.03809 * 24 15 14 38 38 H 1.09002 * 110.36528 * 94.71731 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1039 1.6965 -1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.3257 -4.6994 0.7941 13 6 1.7993 -6.1801 0.1275 14 6 0.8246 -7.1644 -0.5527 15 7 -0.0334 -6.3782 -1.4512 16 6 -1.0314 -6.8687 -2.2129 17 8 -1.7424 -6.1120 -2.8438 18 6 -1.2612 -8.3307 -2.2808 19 6 -0.5468 -9.2092 -1.4605 20 6 -0.7960 -10.5649 -1.5538 21 7 -1.6852 -11.0325 -2.4072 22 6 -2.3767 -10.2398 -3.2014 23 6 -2.1945 -8.8706 -3.1709 24 6 0.3776 -4.9642 -1.3801 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3881 0.0005 27 1 2.6848 -3.7145 -0.8894 28 1 2.6848 -3.7145 0.8905 29 1 2.7522 -6.1538 -0.4011 30 1 1.9453 -6.4437 1.1749 31 1 1.3841 -7.9029 -1.1268 32 1 0.2145 -7.6622 0.2009 33 1 0.1867 -8.8335 -0.7626 34 1 -0.2520 -11.2512 -0.9218 35 1 -3.0950 -10.6664 -3.8859 36 1 -2.7643 -8.2272 -3.8247 37 1 -0.4938 -4.3122 -1.4407 38 1 1.0817 -4.7332 -2.1795 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731650405.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:52 Heat of formation + Delta-G solvation = 12.523032 kcal Electronic energy + Delta-G solvation = -20557.760578 eV Core-core repulsion = 17400.289505 eV Total energy + Delta-G solvation = -3157.471073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.96567 -40.45380 -38.98864 -36.86052 -34.59282 -33.45060 -32.35271 -31.90139 -30.08049 -27.45401 -26.01129 -24.72408 -24.44577 -23.42046 -21.60979 -21.21948 -19.43481 -18.80122 -17.91499 -17.37748 -17.02295 -16.53296 -16.40841 -16.19530 -15.75359 -15.42479 -15.16718 -14.97434 -14.72773 -14.63578 -14.20678 -13.97208 -13.62701 -13.23410 -12.80516 -12.68941 -12.58142 -12.04138 -11.97059 -11.85406 -11.73805 -11.53906 -11.22690 -11.03316 -10.94850 -10.49350 -10.23839 -9.88911 -9.13902 -8.42100 -5.36384 -0.41323 0.06221 1.57399 1.63169 1.67132 1.68127 1.84056 2.70536 2.79307 3.10125 3.37499 3.43416 3.45841 3.53606 3.74020 3.81846 3.91238 3.97656 4.03975 4.13570 4.28239 4.39340 4.47440 4.57536 4.66547 4.70778 4.73500 4.78862 4.87804 4.93504 4.97944 5.09567 5.15565 5.31037 5.56905 5.57909 6.24779 6.45950 6.80384 6.86433 7.06603 7.96763 8.07885 9.09672 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.040531 B = 0.003324 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.668249 B = 8421.164261 C = 8972.837365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.108 4.108 3 Si 1.129 2.871 4 H -0.295 1.295 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.335 4.335 8 H 0.071 0.929 9 N -0.761 5.761 10 C 0.169 3.831 11 C -0.099 4.099 12 H 0.077 0.923 13 C -0.113 4.113 14 C 0.082 3.918 15 N -0.607 5.607 16 C 0.559 3.441 17 O -0.583 6.583 18 C -0.099 4.099 19 C -0.165 4.165 20 C 0.098 3.902 21 N -0.489 5.489 22 C 0.096 3.904 23 C -0.131 4.131 24 C 0.117 3.883 25 H 0.242 0.758 26 H 0.358 0.642 27 H 0.024 0.976 28 H 0.036 0.964 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.195 0.805 34 H 0.199 0.801 35 H 0.187 0.813 36 H 0.138 0.862 37 H 0.042 0.958 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -25.273 -0.623 25.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.299 4.299 3 Si 0.954 3.046 4 H -0.221 1.221 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.466 4.466 8 H 0.089 0.911 9 N -0.406 5.406 10 C 0.042 3.958 11 C -0.118 4.118 12 H 0.095 0.905 13 C -0.151 4.151 14 C -0.039 4.039 15 N -0.339 5.339 16 C 0.350 3.650 17 O -0.464 6.464 18 C -0.110 4.110 19 C -0.184 4.184 20 C -0.059 4.059 21 N -0.199 5.199 22 C -0.060 4.060 23 C -0.152 4.152 24 C -0.006 4.006 25 H 0.052 0.948 26 H 0.190 0.810 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.112 0.888 30 H 0.135 0.865 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.211 0.789 34 H 0.216 0.784 35 H 0.204 0.796 36 H 0.156 0.844 37 H 0.061 0.939 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.609 -24.177 -1.039 24.340 hybrid contribution -0.562 -0.081 -0.323 0.653 sum 2.047 -24.258 -1.362 24.382 Atomic orbital electron populations 1.71000 1.07349 1.27773 1.56366 1.27292 0.97071 1.04969 1.00551 0.82620 0.73354 0.71381 0.77293 1.22146 1.19909 1.20366 1.20419 0.92535 0.87070 1.46594 0.91081 1.42669 1.04785 1.02329 1.90784 1.20713 0.93260 0.83316 0.98491 1.22439 0.97923 0.96341 0.95135 0.90469 1.22766 0.98196 0.90418 1.03729 1.22982 0.92755 0.95027 0.93107 1.48484 1.32814 1.09667 1.42901 1.18496 0.79252 0.88579 0.78704 1.90774 1.47868 1.60853 1.46881 1.20245 0.99458 0.91667 0.99675 1.23930 1.00252 0.94727 0.99453 1.23459 0.93721 0.93707 0.94993 1.67635 1.06206 1.41098 1.04947 1.23142 0.97395 0.88810 0.96607 1.22420 0.97055 0.97634 0.98117 1.22170 0.98330 0.81574 0.98485 0.94792 0.81047 0.95767 0.94569 0.88758 0.86531 0.87088 0.87626 0.78869 0.78406 0.79586 0.84364 0.93906 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.92 13.70 21.65 0.30 -62.63 16 2 C -0.11 -6.39 5.50 84.86 0.47 -5.92 16 3 Si 1.13 52.43 29.92 68.60 2.05 54.48 16 4 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.33 -18.99 9.99 84.03 0.84 -18.15 16 8 H 0.07 3.86 7.83 -2.92 -0.02 3.84 16 9 N -0.76 -38.59 5.55 -343.45 -1.90 -40.49 16 10 C 0.17 6.29 5.72 86.38 0.49 6.78 16 11 C -0.10 -2.82 3.05 -9.40 -0.03 -2.85 16 12 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 13 C -0.11 -1.83 6.42 31.78 0.20 -1.63 16 14 C 0.08 1.19 4.88 86.73 0.42 1.61 16 15 N -0.61 -15.96 3.33 -815.94 -2.71 -18.68 16 16 C 0.56 17.01 7.83 86.87 0.68 17.69 16 17 O -0.58 -23.50 16.70 -3.73 -0.06 -23.56 16 18 C -0.10 -2.24 5.91 -19.88 -0.12 -2.36 16 19 C -0.16 -2.37 8.70 22.63 0.20 -2.17 16 20 C 0.10 1.26 11.17 84.68 0.95 2.21 16 21 N -0.49 -8.50 10.33 -196.00 -2.03 -10.52 16 22 C 0.10 1.63 11.17 84.68 0.95 2.58 16 23 C -0.13 -2.79 9.68 22.63 0.22 -2.57 16 24 C 0.12 3.84 6.35 86.86 0.55 4.39 16 25 H 0.24 15.64 6.77 -92.71 -0.63 15.01 16 26 H 0.36 19.24 6.50 -92.71 -0.60 18.64 16 27 H 0.02 0.91 7.96 -2.39 -0.02 0.89 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.37 8.04 -2.39 -0.02 1.35 16 30 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 1.00 6.75 -2.39 -0.02 0.99 16 32 H 0.11 1.04 6.77 -2.39 -0.02 1.03 16 33 H 0.19 1.62 2.94 -3.33 -0.01 1.61 16 34 H 0.20 0.99 8.06 -2.91 -0.02 0.96 16 35 H 0.19 2.03 8.06 -2.91 -0.02 2.00 16 36 H 0.14 3.08 7.76 -2.91 -0.02 3.06 16 37 H 0.04 1.73 7.99 -2.39 -0.02 1.71 16 38 H 0.06 2.21 7.91 -2.39 -0.02 2.19 16 Total: -1.00 -81.26 314.95 2.08 -79.17 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.62 Total: 22.61 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 5.82 Total: -0.39 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -6.35 Total: -132.32 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.06 Total: -23.56 kcal Atomic # 14 Polarization: 52.43 SS G_CDS: 2.05 Total: 54.48 kcal Total: -81.26 2.08 -79.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731650405.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.694 kcal (2) G-P(sol) polarization free energy of solvation -81.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds