Wall clock time and date at job start Mon Mar 30 2020 02:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99422 * 2 1 4 4 H 1.48498 * 109.46979 * 269.99351 * 3 2 1 5 5 H 1.48499 * 109.47641 * 29.99671 * 3 2 1 6 6 H 1.48506 * 109.46896 * 150.00054 * 3 2 1 7 7 C 1.38811 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00052 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99581 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99689 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47013 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46591 * 65.00277 * 11 10 9 13 13 N 1.46495 * 109.47609 * 305.00693 * 11 10 9 14 14 C 1.34771 * 120.00587 * 155.00336 * 13 11 10 15 15 O 1.21517 * 119.99478 * 359.97438 * 14 13 11 16 16 C 1.48147 * 120.00224 * 180.02562 * 14 13 11 17 17 C 1.39825 * 120.92026 * 179.97438 * 16 14 13 18 18 C 1.38145 * 118.99773 * 179.97438 * 17 16 14 19 19 N 1.31816 * 120.89947 * 0.02562 * 18 17 16 20 20 C 1.31811 * 122.04628 * 359.96367 * 19 18 17 21 21 C 1.38147 * 120.90067 * 0.03689 * 20 19 18 22 22 C 1.52999 * 109.46836 * 185.00151 * 11 10 9 23 23 C 1.53003 * 117.49618 * 248.74775 * 22 11 10 24 24 C 1.53002 * 117.49588 * 180.09193 * 22 11 10 25 25 H 0.96996 * 119.99957 * 0.02562 * 1 2 3 26 26 H 0.96994 * 120.00661 * 0.02562 * 9 7 2 27 27 H 1.09000 * 109.46655 * 60.00604 * 10 9 7 28 28 H 1.08992 * 109.46983 * 300.00519 * 10 9 7 29 29 H 0.97011 * 119.99520 * 334.99381 * 13 11 10 30 30 H 1.07998 * 120.49967 * 359.70209 * 17 16 14 31 31 H 1.08002 * 119.54839 * 179.97438 * 18 17 16 32 32 H 1.07996 * 119.54741 * 180.02562 * 20 19 18 33 33 H 1.07992 * 120.50125 * 179.97438 * 21 20 19 34 34 H 1.08995 * 115.54961 * 34.42284 * 22 11 10 35 35 H 1.09000 * 117.50331 * 0.02562 * 23 22 11 36 36 H 1.09004 * 117.49512 * 145.02089 * 23 22 11 37 37 H 1.09005 * 117.49565 * 214.97630 * 24 22 11 38 38 H 1.08997 * 117.49791 * 0.02562 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0016 10 6 2.0583 -3.6568 0.0016 11 6 1.0641 -4.8197 0.0022 12 1 0.4976 -4.8138 -0.9290 13 7 0.1449 -4.6758 1.1338 14 6 -1.0795 -5.2368 1.0831 15 8 -1.4211 -5.8615 0.0984 16 6 -2.0092 -5.0908 2.2272 17 6 -3.2840 -5.6643 2.1949 18 6 -4.1184 -5.5038 3.2841 19 7 -3.7271 -4.8214 4.3418 20 6 -2.5342 -4.2652 4.4133 21 6 -1.6361 -4.3759 3.3694 22 6 1.8251 -6.1411 0.1280 23 6 1.8342 -7.0695 -1.0881 24 6 1.0025 -7.4311 0.1451 25 1 -0.4850 0.8400 -0.0004 26 1 0.3558 -2.3881 0.0016 27 1 2.6856 -3.7140 0.8912 28 1 2.6843 -3.7148 -0.8887 29 1 0.4177 -4.1769 1.9198 30 1 -3.6129 -6.2205 1.3296 31 1 -5.1051 -5.9426 3.2684 32 1 -2.2553 -3.7152 5.2999 33 1 -0.6606 -3.9172 3.4347 34 1 2.7239 -6.1091 0.7436 35 1 1.2985 -6.7388 -1.9779 36 1 2.7391 -7.6486 -1.2723 37 1 1.3606 -8.2480 0.7716 38 1 -0.0806 -7.3383 0.0663 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733163189.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:11 Heat of formation + Delta-G solvation = 18.890060 kcal Electronic energy + Delta-G solvation = -20940.258170 eV Core-core repulsion = 17783.063193 eV Total energy + Delta-G solvation = -3157.194978 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.70431 -40.42090 -38.41219 -36.64936 -35.17894 -33.76600 -32.85582 -32.15990 -29.72909 -26.26075 -25.49053 -24.39909 -23.30904 -23.07674 -22.04331 -21.36560 -19.54380 -18.89015 -17.90442 -16.87499 -16.80574 -16.64578 -16.54347 -16.24263 -15.86715 -15.32872 -15.06737 -14.89001 -14.70425 -14.57280 -14.33304 -13.72913 -13.20351 -12.81977 -12.73163 -12.70991 -12.49364 -12.32453 -12.08098 -11.85749 -11.45925 -11.18495 -11.03607 -10.96516 -10.93251 -10.52060 -10.18839 -10.03882 -9.02956 -7.94951 -5.24992 -0.33183 0.10562 1.48861 1.50022 1.58361 1.81841 1.98387 2.55498 2.85312 2.97665 3.39471 3.50480 3.51542 3.57673 3.80795 3.94392 3.96840 4.06852 4.10705 4.15239 4.30937 4.42803 4.53481 4.61377 4.79330 4.80452 4.83000 4.88577 5.01698 5.05775 5.09989 5.27626 5.32939 5.48215 5.51881 5.61751 6.25079 6.44856 6.88949 7.09151 7.32916 8.04954 8.29025 9.27818 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.005942 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.731792 B = 4711.346491 C = 6482.865397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.072 4.072 3 Si 0.972 3.028 4 H -0.291 1.291 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.243 4.243 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.178 3.822 12 H 0.061 0.939 13 N -0.693 5.693 14 C 0.557 3.443 15 O -0.563 6.563 16 C -0.101 4.101 17 C -0.125 4.125 18 C 0.095 3.905 19 N -0.488 5.488 20 C 0.094 3.906 21 C -0.138 4.138 22 C -0.166 4.166 23 C -0.163 4.163 24 C -0.183 4.183 25 H 0.250 0.750 26 H 0.373 0.627 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.409 0.591 30 H 0.149 0.851 31 H 0.192 0.808 32 H 0.188 0.812 33 H 0.152 0.848 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.104 0.896 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.884 -14.311 7.257 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.265 4.265 3 Si 0.802 3.198 4 H -0.219 1.219 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.073 3.927 12 H 0.079 0.921 13 N -0.343 5.343 14 C 0.345 3.655 15 O -0.444 6.444 16 C -0.112 4.112 17 C -0.145 4.145 18 C -0.062 4.062 19 N -0.198 5.198 20 C -0.062 4.062 21 C -0.158 4.158 22 C -0.185 4.185 23 C -0.200 4.200 24 C -0.220 4.220 25 H 0.058 0.942 26 H 0.205 0.795 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.246 0.754 30 H 0.167 0.833 31 H 0.209 0.791 32 H 0.205 0.795 33 H 0.169 0.831 34 H 0.142 0.858 35 H 0.101 0.899 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.480 -14.542 7.256 16.319 hybrid contribution 0.632 1.334 -0.733 1.648 sum -0.848 -13.208 6.523 14.755 Atomic orbital electron populations 1.69831 1.06658 1.25972 1.59400 1.25539 0.96266 1.01034 1.03620 0.85160 0.77854 0.79596 0.77231 1.21881 1.22445 1.19052 1.19621 0.91617 0.84997 1.41241 0.90182 1.42521 1.05599 1.00925 1.89582 1.21058 0.93283 0.83674 0.99695 1.20634 0.89535 0.93678 0.88836 0.92089 1.45823 1.14129 1.53600 1.20775 1.18434 0.81877 0.78592 0.86645 1.90662 1.76677 1.42907 1.34157 1.20452 0.95890 1.00148 0.94690 1.22447 0.92683 0.98552 1.00838 1.23243 1.00658 0.94594 0.87678 1.67633 1.17498 1.07718 1.26933 1.23199 0.88330 0.95888 0.98828 1.22579 1.02458 0.97503 0.93300 1.22575 1.01884 0.89877 1.04202 1.22991 1.02697 1.02427 0.91890 1.23204 0.99360 0.97724 1.01751 0.94160 0.79459 0.93845 0.94300 0.75414 0.83286 0.79090 0.79484 0.83072 0.85843 0.89938 0.86502 0.87773 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.19 13.06 21.65 0.28 -57.90 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.97 44.94 29.55 68.60 2.03 46.96 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.24 -12.95 9.99 84.03 0.84 -12.12 16 8 H 0.08 4.05 7.83 -2.92 -0.02 4.03 16 9 N -0.74 -35.81 5.43 -343.45 -1.87 -37.67 16 10 C 0.15 5.52 5.80 86.38 0.50 6.02 16 11 C 0.18 5.81 2.43 44.99 0.11 5.92 16 12 H 0.06 2.36 7.33 -2.39 -0.02 2.34 16 13 N -0.69 -21.73 4.46 -445.13 -1.98 -23.71 16 14 C 0.56 18.31 7.13 86.88 0.62 18.93 16 15 O -0.56 -21.24 13.47 -3.77 -0.05 -21.29 16 16 C -0.10 -2.85 5.91 -19.88 -0.12 -2.97 16 17 C -0.12 -3.12 9.68 22.63 0.22 -2.90 16 18 C 0.09 2.05 11.17 84.67 0.95 2.99 16 19 N -0.49 -11.75 10.34 -196.01 -2.03 -13.77 16 20 C 0.09 2.09 11.17 84.67 0.95 3.04 16 21 C -0.14 -3.37 9.62 22.63 0.22 -3.15 16 22 C -0.17 -4.32 5.36 -10.79 -0.06 -4.38 16 23 C -0.16 -3.91 10.18 30.62 0.31 -3.60 16 24 C -0.18 -4.70 9.73 30.62 0.30 -4.40 16 25 H 0.25 14.68 8.31 -92.71 -0.77 13.90 16 26 H 0.37 19.68 7.33 -92.71 -0.68 19.00 16 27 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.41 11.90 6.75 -92.70 -0.63 11.28 16 30 H 0.15 3.55 7.74 -2.91 -0.02 3.53 16 31 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.15 3.27 6.54 -2.91 -0.02 3.25 16 34 H 0.12 2.78 8.11 -2.39 -0.02 2.76 16 35 H 0.08 2.20 8.05 -2.39 -0.02 2.18 16 36 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.09 2.90 5.02 -2.39 -0.01 2.88 16 Total: -1.00 -67.61 323.01 1.47 -66.14 By element: Atomic # 1 Polarization: 41.62 SS G_CDS: -0.21 Total: 41.41 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 5.30 Total: -0.16 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -5.59 Total: -133.06 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.05 Total: -21.29 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.61 1.47 -66.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733163189.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.028 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds