Wall clock time and date at job start Mon Mar 30 2020 01:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00328 * 2 1 4 4 H 1.48500 * 109.47132 * 270.00383 * 3 2 1 5 5 H 1.48502 * 109.46748 * 30.00272 * 3 2 1 6 6 H 1.48492 * 109.47080 * 149.99956 * 3 2 1 7 7 C 1.38812 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00023 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00174 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00426 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47565 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46710 * 294.99935 * 11 10 9 13 13 N 1.46492 * 109.47213 * 54.99736 * 11 10 9 14 14 C 1.34781 * 119.99838 * 205.00368 * 13 11 10 15 15 O 1.21514 * 120.00459 * 0.02562 * 14 13 11 16 16 C 1.48175 * 119.99986 * 179.97438 * 14 13 11 17 17 C 1.39302 * 119.72256 * 180.02562 * 16 14 13 18 18 C 1.38596 * 119.05902 * 179.97438 * 17 16 14 19 19 C 1.38630 * 118.48529 * 359.97438 * 18 17 16 20 20 C 1.38558 * 119.35539 * 0.28231 * 19 18 17 21 21 N 1.31533 * 120.89638 * 359.41561 * 20 19 18 22 22 C 1.52994 * 109.47488 * 175.00035 * 11 10 9 23 23 C 1.53000 * 117.50263 * 248.74576 * 22 11 10 24 24 C 1.52998 * 117.50110 * 180.08507 * 22 11 10 25 25 H 0.97001 * 120.00051 * 359.97438 * 1 2 3 26 26 H 0.97003 * 119.99749 * 0.02562 * 9 7 2 27 27 H 1.09005 * 109.47130 * 59.99976 * 10 9 7 28 28 H 1.09002 * 109.47042 * 300.00033 * 10 9 7 29 29 H 0.97001 * 120.00364 * 25.00089 * 13 11 10 30 30 H 1.08000 * 120.47545 * 359.94755 * 17 16 14 31 31 H 1.07991 * 120.75611 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.31909 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.54941 * 179.70362 * 20 19 18 34 34 H 1.09009 * 115.55111 * 34.41225 * 22 11 10 35 35 H 1.09008 * 117.49425 * 359.97438 * 23 22 11 36 36 H 1.08994 * 117.50638 * 145.01534 * 23 22 11 37 37 H 1.09003 * 117.49983 * 214.98276 * 24 22 11 38 38 H 1.08999 * 117.50141 * 359.97372 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.4972 -4.8138 0.9300 13 7 0.1446 -4.6758 -1.1328 14 6 -1.0799 -5.2367 -1.0820 15 8 -1.4217 -5.8613 -0.0973 16 6 -2.0097 -5.0907 -2.2264 17 6 -3.2742 -5.6723 -2.1675 18 6 -4.1330 -5.5267 -3.2454 19 6 -3.6972 -4.8036 -4.3450 20 6 -2.4241 -4.2569 -4.3373 21 7 -1.6314 -4.4057 -3.2983 22 6 1.8245 -6.1411 -0.1269 23 6 1.6670 -6.9258 -1.4309 24 6 1.0017 -7.4308 -0.1481 25 1 -0.4850 0.8400 0.0004 26 1 0.3555 -2.3881 -0.0005 27 1 2.6846 -3.7146 0.8895 28 1 2.6846 -3.7145 -0.8905 29 1 0.4173 -4.1769 -1.9187 30 1 -3.5808 -6.2291 -1.2944 31 1 -5.1195 -5.9657 -3.2288 32 1 -4.3420 -4.6720 -5.2014 33 1 -2.0796 -3.6971 -5.1942 34 1 2.7968 -6.1725 0.3650 35 1 1.0209 -6.5007 -2.1991 36 1 2.5353 -7.4736 -1.7967 37 1 1.4327 -8.3108 0.3295 38 1 -0.0817 -7.3380 -0.0721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733165154.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:57 Heat of formation + Delta-G solvation = 44.653887 kcal Electronic energy + Delta-G solvation = -21102.124927 eV Core-core repulsion = 17946.047153 eV Total energy + Delta-G solvation = -3156.077774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60570 -39.29205 -36.99300 -34.85592 -33.41799 -32.49861 -31.52072 -30.87313 -28.13642 -24.71621 -23.91062 -23.47312 -22.19425 -21.45092 -20.96181 -19.56956 -18.05188 -17.11038 -16.72383 -16.04552 -15.88898 -15.43937 -14.95736 -14.55167 -14.46724 -13.94503 -13.60332 -13.23768 -13.18371 -13.14177 -12.77205 -12.10605 -11.98304 -11.60308 -11.31614 -11.17009 -10.85765 -10.79699 -10.25103 -10.12194 -10.03492 -9.94362 -9.74926 -9.53144 -9.42991 -9.22794 -8.87749 -8.59140 -6.91725 -5.73702 -3.03434 0.66339 1.16940 2.91071 3.36433 3.45274 3.50078 3.52007 3.94150 4.09287 4.23485 4.59322 4.71143 4.82614 4.90891 4.97225 5.00984 5.22524 5.24679 5.37228 5.58502 5.60694 5.65640 5.78658 5.89357 5.91938 6.00408 6.05743 6.07269 6.28386 6.37264 6.51162 6.52936 6.54506 6.73188 6.96219 7.66318 7.71674 7.98190 8.43535 8.49724 9.55457 10.11705 10.47028 11.48581 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.005845 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.869092 B = 4789.490474 C = 6248.711635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.165 3.835 12 H 0.092 0.908 13 N -0.685 5.685 14 C 0.570 3.430 15 O -0.538 6.538 16 C 0.086 3.914 17 C -0.115 4.115 18 C -0.085 4.085 19 C -0.156 4.156 20 C 0.099 3.901 21 N -0.451 5.451 22 C -0.160 4.160 23 C -0.178 4.178 24 C -0.188 4.188 25 H 0.254 0.746 26 H 0.386 0.614 27 H 0.035 0.965 28 H 0.027 0.973 29 H 0.416 0.584 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.162 0.838 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 -14.274 -8.409 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.061 3.939 12 H 0.110 0.890 13 N -0.334 5.334 14 C 0.355 3.645 15 O -0.416 6.416 16 C -0.052 4.052 17 C -0.136 4.136 18 C -0.111 4.111 19 C -0.176 4.176 20 C -0.060 4.060 21 N -0.162 5.162 22 C -0.179 4.179 23 C -0.215 4.215 24 C -0.224 4.224 25 H 0.064 0.936 26 H 0.220 0.780 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.253 0.747 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.179 0.821 34 H 0.129 0.871 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.451 -14.203 -7.659 16.740 hybrid contribution -0.576 0.932 -0.455 1.186 sum -5.027 -13.272 -8.114 16.348 Atomic orbital electron populations 1.69676 1.05109 1.25573 1.57493 1.24746 0.95486 0.97676 1.02920 0.86187 0.78638 0.83866 0.77459 1.21752 1.21848 1.20764 1.19206 0.91009 0.84042 1.42945 0.91121 1.42339 1.06003 0.99703 1.89527 1.20910 0.93005 0.85055 0.99011 1.20835 0.90260 0.93038 0.89813 0.88957 1.45845 1.13701 1.52888 1.21004 1.17846 0.81729 0.79353 0.85572 1.90690 1.76265 1.42293 1.32401 1.21264 0.93904 0.96470 0.93599 1.22128 0.93249 0.98591 0.99659 1.21594 0.99811 0.96884 0.92787 1.22358 0.97673 0.98126 0.99440 1.22833 0.90447 0.96651 0.96096 1.67612 1.36396 1.12331 0.99861 1.22693 1.00808 0.92369 1.02058 1.22904 1.02978 1.03971 0.91672 1.23334 1.01479 0.96783 1.00834 0.93574 0.77999 0.94715 0.95527 0.74685 0.83533 0.84291 0.84421 0.82096 0.87132 0.88981 0.89475 0.89699 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.61 5.43 -59.91 -0.33 -18.93 16 10 C 0.15 2.99 5.80 -4.05 -0.02 2.96 16 11 C 0.17 2.92 2.59 -67.94 -0.18 2.75 16 12 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 13 N -0.68 -12.04 3.04 -54.65 -0.17 -12.20 16 14 C 0.57 10.06 6.65 -12.18 -0.08 9.98 16 15 O -0.54 -10.26 13.35 5.35 0.07 -10.19 16 16 C 0.09 1.35 6.75 -83.01 -0.56 0.79 16 17 C -0.12 -1.50 9.63 -39.05 -0.38 -1.87 16 18 C -0.08 -0.84 10.17 -39.30 -0.40 -1.24 16 19 C -0.16 -1.47 10.11 -39.32 -0.40 -1.87 16 20 C 0.10 1.16 11.18 -17.56 -0.20 0.97 16 21 N -0.45 -6.85 9.54 -9.80 -0.09 -6.94 16 22 C -0.16 -2.37 5.70 -90.62 -0.52 -2.89 16 23 C -0.18 -2.45 9.74 -26.70 -0.26 -2.71 16 24 C -0.19 -2.68 9.82 -26.70 -0.26 -2.95 16 25 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.39 10.57 7.33 -40.82 -0.30 10.27 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.42 7.52 7.93 -40.82 -0.32 7.20 16 30 H 0.15 1.80 7.64 -52.49 -0.40 1.40 16 31 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.11 1.49 8.11 -51.92 -0.42 1.07 16 35 H 0.09 1.35 6.67 -51.92 -0.35 1.00 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.12 1.89 5.01 -51.93 -0.26 1.63 16 LS Contribution 322.11 15.07 4.85 4.85 Total: -1.00 -32.51 322.11 -8.41 -40.91 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -4.95 Total: 16.19 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -3.50 Total: -3.44 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: 0.14 Total: -65.87 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.07 Total: -10.19 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.51 -8.41 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733165154.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.567 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds