Wall clock time and date at job start Mon Mar 30 2020 01:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00328 * 2 1 4 4 H 1.48500 * 109.47132 * 270.00383 * 3 2 1 5 5 H 1.48502 * 109.46748 * 30.00272 * 3 2 1 6 6 H 1.48492 * 109.47080 * 149.99956 * 3 2 1 7 7 C 1.38812 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00023 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00174 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00426 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47565 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.46710 * 294.99935 * 11 10 9 13 13 N 1.46492 * 109.47213 * 54.99736 * 11 10 9 14 14 C 1.34781 * 119.99838 * 205.00368 * 13 11 10 15 15 O 1.21514 * 120.00459 * 0.02562 * 14 13 11 16 16 C 1.48175 * 119.99986 * 179.97438 * 14 13 11 17 17 C 1.39302 * 119.72256 * 180.02562 * 16 14 13 18 18 C 1.38596 * 119.05902 * 179.97438 * 17 16 14 19 19 C 1.38630 * 118.48529 * 359.97438 * 18 17 16 20 20 C 1.38558 * 119.35539 * 0.28231 * 19 18 17 21 21 N 1.31533 * 120.89638 * 359.41561 * 20 19 18 22 22 C 1.52994 * 109.47488 * 175.00035 * 11 10 9 23 23 C 1.53000 * 117.50263 * 248.74576 * 22 11 10 24 24 C 1.52998 * 117.50110 * 180.08507 * 22 11 10 25 25 H 0.97001 * 120.00051 * 359.97438 * 1 2 3 26 26 H 0.97003 * 119.99749 * 0.02562 * 9 7 2 27 27 H 1.09005 * 109.47130 * 59.99976 * 10 9 7 28 28 H 1.09002 * 109.47042 * 300.00033 * 10 9 7 29 29 H 0.97001 * 120.00364 * 25.00089 * 13 11 10 30 30 H 1.08000 * 120.47545 * 359.94755 * 17 16 14 31 31 H 1.07991 * 120.75611 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.31909 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.54941 * 179.70362 * 20 19 18 34 34 H 1.09009 * 115.55111 * 34.41225 * 22 11 10 35 35 H 1.09008 * 117.49425 * 359.97438 * 23 22 11 36 36 H 1.08994 * 117.50638 * 145.01534 * 23 22 11 37 37 H 1.09003 * 117.49983 * 214.98276 * 24 22 11 38 38 H 1.08999 * 117.50141 * 359.97372 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.4972 -4.8138 0.9300 13 7 0.1446 -4.6758 -1.1328 14 6 -1.0799 -5.2367 -1.0820 15 8 -1.4217 -5.8613 -0.0973 16 6 -2.0097 -5.0907 -2.2264 17 6 -3.2742 -5.6723 -2.1675 18 6 -4.1330 -5.5267 -3.2454 19 6 -3.6972 -4.8036 -4.3450 20 6 -2.4241 -4.2569 -4.3373 21 7 -1.6314 -4.4057 -3.2983 22 6 1.8245 -6.1411 -0.1269 23 6 1.6670 -6.9258 -1.4309 24 6 1.0017 -7.4308 -0.1481 25 1 -0.4850 0.8400 0.0004 26 1 0.3555 -2.3881 -0.0005 27 1 2.6846 -3.7146 0.8895 28 1 2.6846 -3.7145 -0.8905 29 1 0.4173 -4.1769 -1.9187 30 1 -3.5808 -6.2291 -1.2944 31 1 -5.1195 -5.9657 -3.2288 32 1 -4.3420 -4.6720 -5.2014 33 1 -2.0796 -3.6971 -5.1942 34 1 2.7968 -6.1725 0.3650 35 1 1.0209 -6.5007 -2.1991 36 1 2.5353 -7.4736 -1.7967 37 1 1.4327 -8.3108 0.3295 38 1 -0.0817 -7.3380 -0.0721 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733165154.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:56 Heat of formation + Delta-G solvation = 22.956710 kcal Electronic energy + Delta-G solvation = -21103.065787 eV Core-core repulsion = 17946.047153 eV Total energy + Delta-G solvation = -3157.018634 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.75246 -40.44003 -38.32154 -36.56430 -34.91637 -33.63489 -32.94629 -32.26019 -29.81022 -26.20470 -25.44931 -24.40140 -23.48829 -22.99330 -22.14559 -20.90875 -19.48159 -18.87497 -17.80938 -17.31545 -17.03212 -16.65834 -16.52544 -15.96084 -15.62005 -15.32547 -15.16031 -14.83567 -14.67623 -14.23920 -14.06089 -13.62524 -13.14359 -12.94552 -12.83840 -12.72114 -12.67156 -12.34082 -12.09648 -11.84406 -11.46662 -11.14278 -10.98632 -10.93264 -10.82715 -10.48217 -10.22001 -9.95071 -9.02164 -7.93970 -5.24272 -0.32680 0.29230 1.47551 1.49706 1.58106 1.72166 2.10039 2.55697 2.90051 2.93463 3.17467 3.40217 3.61243 3.83179 3.96489 3.99360 4.05885 4.08418 4.12281 4.16468 4.38111 4.48004 4.52049 4.61775 4.78055 4.80754 4.86605 5.02422 5.07848 5.11995 5.16474 5.23941 5.36538 5.49131 5.53661 5.67147 6.25665 6.43336 6.84253 7.15446 7.32707 8.05597 8.29922 9.29238 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.013984 B = 0.005845 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.869092 B = 4789.490474 C = 6248.711635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.151 3.849 11 C 0.174 3.826 12 H 0.066 0.934 13 N -0.685 5.685 14 C 0.565 3.435 15 O -0.563 6.563 16 C 0.049 3.951 17 C -0.124 4.124 18 C -0.078 4.078 19 C -0.135 4.135 20 C 0.083 3.917 21 N -0.483 5.483 22 C -0.165 4.165 23 C -0.165 4.165 24 C -0.186 4.186 25 H 0.249 0.751 26 H 0.372 0.628 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.412 0.588 30 H 0.145 0.855 31 H 0.179 0.821 32 H 0.183 0.817 33 H 0.185 0.815 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.109 -14.931 -10.045 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.024 3.976 11 C 0.069 3.931 12 H 0.084 0.916 13 N -0.334 5.334 14 C 0.351 3.649 15 O -0.443 6.443 16 C -0.087 4.087 17 C -0.145 4.145 18 C -0.104 4.104 19 C -0.155 4.155 20 C -0.077 4.077 21 N -0.195 5.195 22 C -0.185 4.185 23 C -0.202 4.202 24 C -0.222 4.222 25 H 0.058 0.942 26 H 0.204 0.796 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.249 0.751 30 H 0.163 0.837 31 H 0.196 0.804 32 H 0.200 0.800 33 H 0.202 0.798 34 H 0.148 0.852 35 H 0.097 0.903 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.289 -14.897 -9.292 18.074 hybrid contribution -0.674 1.079 -0.021 1.273 sum -4.963 -13.818 -9.313 17.387 Atomic orbital electron populations 1.69856 1.06785 1.25923 1.59459 1.25600 0.96324 1.01225 1.03612 0.85095 0.77657 0.79270 0.77434 1.21278 1.22514 1.19262 1.19651 0.91620 0.85062 1.41248 0.90168 1.42519 1.05561 1.01010 1.89507 1.21036 0.93316 0.83793 0.99469 1.20624 0.89714 0.93830 0.88969 0.91623 1.45811 1.14008 1.53033 1.20579 1.18283 0.81811 0.78656 0.86127 1.90655 1.76697 1.43392 1.33578 1.21057 0.94750 0.99251 0.93685 1.22282 0.92865 0.98455 1.00909 1.22068 1.00703 0.96110 0.91515 1.22842 0.96858 0.95498 1.00262 1.23415 0.91435 0.97005 0.95804 1.67511 1.38123 1.13199 1.00704 1.22633 1.01297 0.90918 1.03637 1.22936 1.03320 1.03129 0.90853 1.23290 1.00237 0.97148 1.01553 0.94201 0.79602 0.93916 0.94477 0.75132 0.83745 0.80376 0.80011 0.79808 0.85192 0.90271 0.86951 0.87411 0.89003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 3 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.74 -38.69 5.43 -343.46 -1.87 -40.56 16 10 C 0.15 6.12 5.80 86.38 0.50 6.62 16 11 C 0.17 6.33 2.59 44.99 0.12 6.45 16 12 H 0.07 2.73 7.58 -2.38 -0.02 2.71 16 13 N -0.69 -25.28 3.04 -445.11 -1.35 -26.64 16 14 C 0.56 21.08 6.65 86.88 0.58 21.66 16 15 O -0.56 -22.82 13.35 -3.76 -0.05 -22.87 16 16 C 0.05 1.61 6.75 41.91 0.28 1.89 16 17 C -0.12 -3.21 9.63 22.61 0.22 -2.99 16 18 C -0.08 -1.35 10.17 22.45 0.23 -1.13 16 19 C -0.14 -2.11 10.11 22.44 0.23 -1.88 16 20 C 0.08 1.83 11.18 84.81 0.95 2.78 16 21 N -0.48 -14.94 9.54 -184.91 -1.76 -16.70 16 22 C -0.17 -4.82 5.70 -10.80 -0.06 -4.88 16 23 C -0.17 -4.37 9.74 30.62 0.30 -4.07 16 24 C -0.19 -5.21 9.82 30.62 0.30 -4.91 16 25 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 26 H 0.37 21.25 7.33 -92.71 -0.68 20.57 16 27 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.41 15.68 7.93 -92.71 -0.74 14.95 16 30 H 0.14 3.65 7.64 -2.91 -0.02 3.63 16 31 H 0.18 1.63 8.06 -2.92 -0.02 1.61 16 32 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.13 3.27 8.11 -2.38 -0.02 3.25 16 35 H 0.08 2.33 6.67 -2.38 -0.02 2.31 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.09 3.10 5.01 -2.39 -0.01 3.09 16 Total: -1.00 -72.68 322.11 1.89 -70.79 By element: Atomic # 1 Polarization: 45.54 SS G_CDS: -0.32 Total: 45.22 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 4.94 Total: 2.65 kcal Atomic # 7 Polarization: -139.83 SS G_CDS: -4.70 Total: -144.53 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -72.68 1.89 -70.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733165154.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.744 kcal (2) G-P(sol) polarization free energy of solvation -72.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds