Wall clock time and date at job start Mon Mar 30 2020 02:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99860 * 2 1 4 4 H 1.48501 * 109.46850 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47049 * 299.99986 * 3 2 1 6 6 H 1.48499 * 109.47160 * 60.00304 * 3 2 1 7 7 C 1.38817 * 120.00051 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00174 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99811 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99805 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47085 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.47346 * 64.99639 * 11 10 9 13 13 N 1.46501 * 109.46945 * 304.99636 * 11 10 9 14 14 C 1.34780 * 119.99775 * 155.00112 * 13 11 10 15 15 O 1.21506 * 120.00220 * 0.02562 * 14 13 11 16 16 C 1.48175 * 119.99946 * 180.02562 * 14 13 11 17 17 C 1.39302 * 119.72217 * 179.97438 * 16 14 13 18 18 C 1.38596 * 119.05879 * 179.97438 * 17 16 14 19 19 C 1.38630 * 118.48552 * 0.02562 * 18 17 16 20 20 C 1.38558 * 119.35539 * 0.25409 * 19 18 17 21 21 N 1.31532 * 120.90059 * 359.49177 * 20 19 18 22 22 C 1.53006 * 109.47159 * 185.00108 * 11 10 9 23 23 C 1.52998 * 117.49804 * 248.74751 * 22 11 10 24 24 C 1.52995 * 117.49904 * 180.08544 * 22 11 10 25 25 H 0.96996 * 120.00353 * 0.02562 * 1 2 3 26 26 H 0.96994 * 120.00366 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47248 * 60.00436 * 10 9 7 28 28 H 1.08997 * 109.47188 * 299.99958 * 10 9 7 29 29 H 0.97001 * 120.00408 * 335.00302 * 13 11 10 30 30 H 1.07999 * 120.47505 * 0.02670 * 17 16 14 31 31 H 1.07999 * 120.75338 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.31909 * 179.97438 * 19 18 17 33 33 H 1.07995 * 119.54967 * 179.74631 * 20 19 18 34 34 H 1.09000 * 115.54634 * 34.41490 * 22 11 10 35 35 H 1.09007 * 117.49673 * 359.97438 * 23 22 11 36 36 H 1.08995 * 117.50098 * 145.02177 * 23 22 11 37 37 H 1.08999 * 117.50043 * 214.97871 * 24 22 11 38 38 H 1.09004 * 117.49901 * 359.97240 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.4980 -4.8134 -0.9327 13 7 0.1440 -4.6763 1.1300 14 6 -1.0804 -5.2372 1.0781 15 8 -1.4212 -5.8621 0.0933 16 6 -2.0110 -5.0917 2.2219 17 6 -3.2754 -5.6733 2.1619 18 6 -4.1346 -5.5291 3.2398 19 6 -3.6992 -4.8074 4.3404 20 6 -2.4302 -4.2511 4.3292 21 7 -1.6332 -4.4076 3.2946 22 6 1.8247 -6.1413 0.1246 23 6 1.8347 -7.0691 -1.0919 24 6 1.0022 -7.4312 0.1406 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6847 -3.7146 0.8895 28 1 2.6848 -3.7146 -0.8905 29 1 0.4162 -4.1778 1.9163 30 1 -3.5816 -6.2295 1.2882 31 1 -5.1208 -5.9689 3.2226 32 1 -4.3445 -4.6762 5.1964 33 1 -2.0893 -3.6848 5.1833 34 1 2.7232 -6.1096 0.7408 35 1 1.2989 -6.7383 -1.9817 36 1 2.7396 -7.6483 -1.2757 37 1 1.3597 -8.2484 0.7670 38 1 -0.0811 -7.3384 0.0620 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733165155.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:00 Heat of formation + Delta-G solvation = 17.922474 kcal Electronic energy + Delta-G solvation = -20945.015699 eV Core-core repulsion = 17787.778764 eV Total energy + Delta-G solvation = -3157.236935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.65801 -40.34213 -38.35773 -36.63584 -35.07453 -33.62073 -32.92490 -32.26901 -29.69694 -26.21167 -25.39589 -24.39068 -23.30190 -23.07759 -22.05168 -21.29039 -19.48650 -18.82593 -17.91838 -17.08017 -16.78182 -16.70751 -16.56977 -15.89186 -15.84474 -15.39672 -15.09515 -14.90003 -14.59199 -14.26315 -14.05980 -13.70279 -13.20770 -12.89517 -12.83014 -12.71673 -12.50270 -12.30124 -12.04518 -11.85608 -11.44712 -11.17860 -11.03391 -10.97530 -10.92577 -10.46201 -10.21637 -9.93183 -9.02962 -7.94498 -5.24957 -0.31651 0.29992 1.47440 1.48600 1.58827 1.74159 2.06618 2.55412 2.89298 2.98254 3.24019 3.39741 3.56316 3.84108 3.94424 3.99311 4.08392 4.10854 4.12967 4.16031 4.30098 4.43674 4.54451 4.62000 4.78816 4.80914 4.88014 5.02221 5.06587 5.10718 5.16514 5.28072 5.34049 5.49024 5.54298 5.67928 6.25203 6.45409 6.85562 7.17237 7.32170 8.04627 8.29185 9.28904 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.012754 B = 0.005970 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.900838 B = 4688.920215 C = 6440.638963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.293 1.293 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.743 5.743 10 C 0.150 3.850 11 C 0.175 3.825 12 H 0.062 0.938 13 N -0.686 5.686 14 C 0.566 3.434 15 O -0.565 6.565 16 C 0.050 3.950 17 C -0.124 4.124 18 C -0.078 4.078 19 C -0.136 4.136 20 C 0.083 3.917 21 N -0.484 5.484 22 C -0.169 4.169 23 C -0.158 4.158 24 C -0.184 4.184 25 H 0.249 0.751 26 H 0.372 0.628 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.411 0.589 30 H 0.145 0.855 31 H 0.179 0.821 32 H 0.183 0.817 33 H 0.185 0.815 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.046 -15.068 9.290 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.223 1.223 6 H -0.220 1.220 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.386 5.386 10 C 0.024 3.976 11 C 0.071 3.929 12 H 0.080 0.920 13 N -0.334 5.334 14 C 0.352 3.648 15 O -0.446 6.446 16 C -0.087 4.087 17 C -0.145 4.145 18 C -0.104 4.104 19 C -0.155 4.155 20 C -0.077 4.077 21 N -0.196 5.196 22 C -0.188 4.188 23 C -0.195 4.195 24 C -0.221 4.221 25 H 0.058 0.942 26 H 0.204 0.796 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.248 0.752 30 H 0.163 0.837 31 H 0.196 0.804 32 H 0.200 0.800 33 H 0.202 0.798 34 H 0.138 0.862 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.122 0.878 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.215 -15.037 8.553 17.805 hybrid contribution -0.679 1.089 0.063 1.284 sum -4.893 -13.948 8.616 17.109 Atomic orbital electron populations 1.69863 1.06790 1.25876 1.59498 1.25607 0.96335 1.01235 1.03607 0.85027 0.78310 0.79597 0.76513 1.18755 1.22308 1.22032 1.19691 0.91633 0.85036 1.41154 0.90134 1.42527 1.05566 1.01018 1.89498 1.21044 0.93308 0.83815 0.99471 1.20676 0.89607 0.93754 0.88901 0.91951 1.45819 1.14011 1.52998 1.20574 1.18265 0.81841 0.78584 0.86107 1.90641 1.76857 1.43479 1.33603 1.21064 0.94740 0.99254 0.93614 1.22280 0.92855 0.98421 1.00933 1.22071 1.00676 0.96166 0.91488 1.22839 0.96881 0.95529 1.00256 1.23415 0.91404 0.97010 0.95861 1.67514 1.38021 1.13304 1.00774 1.22561 1.01875 0.89970 1.04426 1.22995 1.02643 1.02128 0.91777 1.23202 0.99408 0.97599 1.01852 0.94183 0.79602 0.94418 0.94007 0.75229 0.83704 0.80357 0.80010 0.79827 0.86157 0.89752 0.86335 0.87797 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.96 13.06 21.65 0.28 -60.68 16 2 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 3 Si 0.98 46.76 29.55 68.60 2.03 48.78 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 9 N -0.74 -38.84 5.43 -343.45 -1.87 -40.71 16 10 C 0.15 6.15 5.80 86.38 0.50 6.65 16 11 C 0.18 6.44 2.43 44.99 0.11 6.55 16 12 H 0.06 2.61 7.33 -2.39 -0.02 2.59 16 13 N -0.69 -25.66 4.49 -445.09 -2.00 -27.66 16 14 C 0.57 21.32 7.15 86.88 0.62 21.95 16 15 O -0.57 -22.95 13.35 -3.74 -0.05 -23.00 16 16 C 0.05 1.65 6.75 41.91 0.28 1.93 16 17 C -0.12 -3.21 9.63 22.61 0.22 -3.00 16 18 C -0.08 -1.36 10.17 22.45 0.23 -1.13 16 19 C -0.14 -2.14 10.11 22.44 0.23 -1.91 16 20 C 0.08 1.85 11.18 84.81 0.95 2.79 16 21 N -0.48 -15.14 9.54 -184.91 -1.76 -16.90 16 22 C -0.17 -4.95 5.36 -10.79 -0.06 -5.01 16 23 C -0.16 -4.10 10.18 30.62 0.31 -3.79 16 24 C -0.18 -5.16 9.74 30.62 0.30 -4.86 16 25 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 26 H 0.37 21.32 7.33 -92.71 -0.68 20.64 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.41 15.79 7.93 -92.71 -0.74 15.05 16 30 H 0.15 3.66 7.64 -2.91 -0.02 3.64 16 31 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.18 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.18 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.12 3.15 8.11 -2.39 -0.02 3.13 16 35 H 0.08 2.37 8.05 -2.38 -0.02 2.35 16 36 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.09 3.13 5.02 -2.38 -0.01 3.12 16 Total: -1.00 -72.99 325.03 1.30 -71.69 By element: Atomic # 1 Polarization: 45.52 SS G_CDS: -0.33 Total: 45.20 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 4.99 Total: 3.29 kcal Atomic # 7 Polarization: -140.61 SS G_CDS: -5.35 Total: -145.95 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.05 Total: -23.00 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -72.99 1.30 -71.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733165155.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.613 kcal (2) G-P(sol) polarization free energy of solvation -72.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds