Wall clock time and date at job start Mon Mar 30 2020 01:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48501 * 109.46909 * 89.99695 * 3 2 1 5 5 H 1.48495 * 109.47122 * 209.99976 * 3 2 1 6 6 H 1.48497 * 109.46901 * 330.00249 * 3 2 1 7 7 C 1.38812 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00004 * 0.02562 * 7 2 1 9 9 N 1.36929 * 119.99895 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99929 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46976 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.88494 * 305.69698 * 11 10 9 13 13 C 1.55159 * 111.00189 * 181.82052 * 11 10 9 14 14 C 1.54364 * 102.92184 * 206.45096 * 13 11 10 15 15 N 1.47026 * 107.28836 * 22.13984 * 14 13 11 16 16 C 1.34774 * 125.65212 * 181.12759 * 15 14 13 17 17 O 1.21559 * 120.00226 * 174.37535 * 16 15 14 18 18 C 1.47837 * 119.99898 * 354.38267 * 16 15 14 19 19 C 1.40029 * 120.55939 * 6.95560 * 18 16 15 20 20 C 1.38355 * 118.28777 * 180.02562 * 19 18 16 21 21 C 1.38352 * 119.30560 * 0.02562 * 20 19 18 22 22 N 1.31931 * 121.07786 * 359.96753 * 21 20 19 23 23 C 1.31690 * 121.87871 * 359.75763 * 22 21 20 24 24 C 1.47431 * 108.70192 * 1.09195 * 15 14 13 25 25 H 0.96998 * 120.00051 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00261 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.47069 * 299.99826 * 10 9 7 28 28 H 1.08999 * 109.47310 * 60.00405 * 10 9 7 29 29 H 1.08998 * 110.72104 * 324.78903 * 13 11 10 30 30 H 1.09004 * 110.72256 * 88.06053 * 13 11 10 31 31 H 1.08998 * 109.85120 * 262.73350 * 14 13 11 32 32 H 1.08993 * 110.03195 * 141.64687 * 14 13 11 33 33 H 1.07997 * 120.85536 * 359.97438 * 19 18 16 34 34 H 1.08005 * 120.34739 * 180.02562 * 20 19 18 35 35 H 1.07996 * 119.46277 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.71606 * 180.26461 * 23 22 21 37 37 H 1.08995 * 110.36503 * 217.03414 * 24 15 14 38 38 H 1.08991 * 110.45966 * 94.75488 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6526 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0013 12 1 5.8904 -1.5356 -0.8252 13 6 6.4278 -3.5129 -0.0447 14 6 7.7598 -3.1240 0.6314 15 7 7.4982 -1.9404 1.4636 16 6 8.4133 -1.2807 2.2009 17 8 8.1071 -0.2520 2.7716 18 6 9.7897 -1.8080 2.3155 19 6 10.1967 -2.9080 1.5506 20 6 11.4952 -3.3629 1.6955 21 6 12.3418 -2.7232 2.5833 22 7 11.9307 -1.6886 3.2911 23 6 10.7063 -1.2154 3.1845 24 6 6.0690 -1.5943 1.3572 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3620 0.0004 27 1 3.8484 -3.0426 0.8898 28 1 3.8492 -3.0422 -0.8902 29 1 5.9224 -4.2956 0.5212 30 1 6.5949 -3.8273 -1.0750 31 1 8.5046 -2.8859 -0.1279 32 1 8.1154 -3.9442 1.2550 33 1 9.5143 -3.3893 0.8657 34 1 11.8444 -4.2086 1.1215 35 1 13.3558 -3.0765 2.6987 36 1 10.4080 -0.3637 3.7779 37 1 5.9398 -0.5121 1.3573 38 1 5.5064 -2.0429 2.1758 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752928680.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:14 Heat of formation + Delta-G solvation = 41.344025 kcal Electronic energy + Delta-G solvation = -20630.492107 eV Core-core repulsion = 17474.270806 eV Total energy + Delta-G solvation = -3156.221301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06792 -39.54309 -37.75955 -35.07490 -33.36754 -32.12483 -31.62516 -30.78426 -29.18804 -26.26200 -24.90675 -23.73676 -23.08469 -21.79501 -20.53054 -20.10963 -17.83906 -17.43558 -17.21049 -16.80201 -16.06123 -15.55784 -15.08606 -14.60674 -14.48082 -14.17146 -13.98464 -13.79769 -13.53923 -13.18071 -12.81750 -12.70877 -12.39790 -12.27855 -11.87070 -11.65831 -11.01013 -10.77837 -10.74122 -10.55939 -10.33309 -10.29364 -10.13292 -9.71552 -9.60703 -9.56318 -8.92630 -8.79795 -7.27053 -5.78731 -3.15123 0.32872 0.82615 2.63392 2.73318 3.38560 3.42318 3.47095 3.52921 3.95138 4.22701 4.26352 4.42759 4.47116 4.58633 4.60857 4.64044 4.73706 4.99288 5.05494 5.14288 5.31046 5.34715 5.51957 5.59717 5.64327 5.67538 5.68962 5.73871 5.79315 6.01741 6.07945 6.16329 6.26487 6.53261 6.63968 7.28551 7.52733 7.94119 7.95940 8.39964 9.18307 9.90845 10.09461 11.39474 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032589 B = 0.003781 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.969042 B = 7404.549122 C = 8081.984095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.282 1.282 5 H -0.277 1.277 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.169 3.831 11 C -0.111 4.111 12 H 0.086 0.914 13 C -0.126 4.126 14 C 0.089 3.911 15 N -0.611 5.611 16 C 0.574 3.426 17 O -0.530 6.530 18 C -0.180 4.180 19 C -0.080 4.080 20 C -0.181 4.181 21 C 0.116 3.884 22 N -0.489 5.489 23 C 0.158 3.842 24 C 0.112 3.888 25 H 0.260 0.740 26 H 0.361 0.639 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.171 0.829 34 H 0.141 0.859 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.082 0.918 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.613 -10.650 0.992 26.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.204 1.204 6 H -0.216 1.216 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.042 3.958 11 C -0.130 4.130 12 H 0.104 0.896 13 C -0.165 4.165 14 C -0.034 4.034 15 N -0.345 5.345 16 C 0.362 3.638 17 O -0.408 6.408 18 C -0.185 4.185 19 C -0.105 4.105 20 C -0.201 4.201 21 C -0.041 4.041 22 N -0.197 5.197 23 C 0.000 4.000 24 C -0.009 4.009 25 H 0.070 0.930 26 H 0.194 0.806 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.187 0.813 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.186 0.814 37 H 0.100 0.900 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 24.837 -9.737 1.932 26.747 hybrid contribution 0.015 0.748 -0.647 0.989 sum 24.852 -8.989 1.285 26.459 Atomic orbital electron populations 1.69700 1.05122 1.25913 1.57357 1.24669 0.95227 0.97240 1.01827 0.86578 0.79162 0.84961 0.78013 1.20857 1.20371 1.21647 1.19029 0.80527 0.94752 1.43377 0.89153 1.42723 1.04150 1.02141 1.91243 1.20566 0.86527 0.89592 0.99130 1.22659 0.97210 0.96294 0.96848 0.89599 1.22726 0.93923 0.98270 1.01555 1.22569 0.98883 0.88010 0.93909 1.48418 1.10122 1.29825 1.46106 1.17721 0.83741 0.83418 0.78884 1.90821 1.80180 1.23005 1.46756 1.20986 0.95813 0.99526 1.02159 1.23224 0.97103 0.93627 0.96524 1.22186 0.94556 1.02269 1.01088 1.23071 1.00005 0.90511 0.90477 1.67838 1.16503 1.12268 1.23114 1.23059 0.87216 0.96764 0.92958 1.22428 0.78553 1.01977 0.97986 0.92998 0.80596 0.95083 0.94859 0.89760 0.89500 0.90576 0.90488 0.81263 0.84085 0.82320 0.81372 0.89953 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.37 13.97 55.49 0.78 -28.59 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 3 Si 0.88 22.40 27.74 -169.99 -4.71 17.68 16 4 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.28 -6.63 6.52 56.52 0.37 -6.27 16 6 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 7 C -0.25 -6.93 10.47 -15.06 -0.16 -7.09 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.76 -17.51 5.30 -59.90 -0.32 -17.83 16 10 C 0.17 2.99 5.71 -4.04 -0.02 2.96 16 11 C -0.11 -1.50 3.07 -88.47 -0.27 -1.77 16 12 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.13 -1.15 6.42 -24.87 -0.16 -1.31 16 14 C 0.09 0.75 4.88 -3.04 -0.01 0.73 16 15 N -0.61 -7.75 3.33 -172.45 -0.57 -8.33 16 16 C 0.57 8.19 7.81 -12.33 -0.10 8.09 16 17 O -0.53 -9.59 16.62 5.31 0.09 -9.50 16 18 C -0.18 -2.04 5.89 -104.82 -0.62 -2.66 16 19 C -0.08 -0.65 8.70 -38.87 -0.34 -0.99 16 20 C -0.18 -1.20 10.10 -39.50 -0.40 -1.60 16 21 C 0.12 0.91 11.17 -17.47 -0.20 0.71 16 22 N -0.49 -5.30 10.35 -12.91 -0.13 -5.44 16 23 C 0.16 1.84 10.77 -17.13 -0.18 1.65 16 24 C 0.11 1.66 6.26 -2.53 -0.02 1.64 16 25 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 26 H 0.36 8.29 5.49 -40.82 -0.22 8.07 16 27 H 0.03 0.55 8.03 -51.93 -0.42 0.14 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.72 8.04 -51.93 -0.42 0.31 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.51 6.74 -51.93 -0.35 0.16 16 32 H 0.08 0.50 6.73 -51.93 -0.35 0.15 16 33 H 0.17 1.02 2.91 -53.59 -0.16 0.87 16 34 H 0.14 0.48 8.06 -52.48 -0.42 0.06 16 35 H 0.16 0.74 8.06 -52.49 -0.42 0.32 16 36 H 0.17 1.94 7.68 -52.49 -0.40 1.54 16 37 H 0.08 1.41 7.98 -51.93 -0.41 1.00 16 38 H 0.08 1.20 7.95 -51.93 -0.41 0.79 16 LS Contribution 313.25 15.07 4.72 4.72 Total: -1.00 -35.04 313.25 -7.57 -42.61 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.85 Total: 4.19 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.57 Total: 0.48 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.25 Total: -60.19 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.04 -7.57 -42.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752928680.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.957 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds