Wall clock time and date at job start Mon Mar 30 2020 01:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99915 * 2 1 4 4 H 1.48501 * 109.46909 * 89.99695 * 3 2 1 5 5 H 1.48495 * 109.47122 * 209.99976 * 3 2 1 6 6 H 1.48497 * 109.46901 * 330.00249 * 3 2 1 7 7 C 1.38812 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00004 * 0.02562 * 7 2 1 9 9 N 1.36929 * 119.99895 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99929 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46976 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.88494 * 305.69698 * 11 10 9 13 13 C 1.55159 * 111.00189 * 181.82052 * 11 10 9 14 14 C 1.54364 * 102.92184 * 206.45096 * 13 11 10 15 15 N 1.47026 * 107.28836 * 22.13984 * 14 13 11 16 16 C 1.34774 * 125.65212 * 181.12759 * 15 14 13 17 17 O 1.21559 * 120.00226 * 174.37535 * 16 15 14 18 18 C 1.47837 * 119.99898 * 354.38267 * 16 15 14 19 19 C 1.40029 * 120.55939 * 6.95560 * 18 16 15 20 20 C 1.38355 * 118.28777 * 180.02562 * 19 18 16 21 21 C 1.38352 * 119.30560 * 0.02562 * 20 19 18 22 22 N 1.31931 * 121.07786 * 359.96753 * 21 20 19 23 23 C 1.31690 * 121.87871 * 359.75763 * 22 21 20 24 24 C 1.47431 * 108.70192 * 1.09195 * 15 14 13 25 25 H 0.96998 * 120.00051 * 359.97438 * 1 2 3 26 26 H 0.97003 * 120.00261 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.47069 * 299.99826 * 10 9 7 28 28 H 1.08999 * 109.47310 * 60.00405 * 10 9 7 29 29 H 1.08998 * 110.72104 * 324.78903 * 13 11 10 30 30 H 1.09004 * 110.72256 * 88.06053 * 13 11 10 31 31 H 1.08998 * 109.85120 * 262.73350 * 14 13 11 32 32 H 1.08993 * 110.03195 * 141.64687 * 14 13 11 33 33 H 1.07997 * 120.85536 * 359.97438 * 19 18 16 34 34 H 1.08005 * 120.34739 * 180.02562 * 20 19 18 35 35 H 1.07996 * 119.46277 * 179.97438 * 21 20 19 36 36 H 1.08001 * 119.71606 * 180.26461 * 23 22 21 37 37 H 1.08995 * 110.36503 * 217.03414 * 24 15 14 38 38 H 1.08991 * 110.45966 * 94.75488 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6526 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.6164 -2.1912 0.0013 12 1 5.8904 -1.5356 -0.8252 13 6 6.4278 -3.5129 -0.0447 14 6 7.7598 -3.1240 0.6314 15 7 7.4982 -1.9404 1.4636 16 6 8.4133 -1.2807 2.2009 17 8 8.1071 -0.2520 2.7716 18 6 9.7897 -1.8080 2.3155 19 6 10.1967 -2.9080 1.5506 20 6 11.4952 -3.3629 1.6955 21 6 12.3418 -2.7232 2.5833 22 7 11.9307 -1.6886 3.2911 23 6 10.7063 -1.2154 3.1845 24 6 6.0690 -1.5943 1.3572 25 1 -0.4850 0.8400 0.0004 26 1 3.8646 -0.3620 0.0004 27 1 3.8484 -3.0426 0.8898 28 1 3.8492 -3.0422 -0.8902 29 1 5.9224 -4.2956 0.5212 30 1 6.5949 -3.8273 -1.0750 31 1 8.5046 -2.8859 -0.1279 32 1 8.1154 -3.9442 1.2550 33 1 9.5143 -3.3893 0.8657 34 1 11.8444 -4.2086 1.1215 35 1 13.3558 -3.0765 2.6987 36 1 10.4080 -0.3637 3.7779 37 1 5.9398 -0.5121 1.3573 38 1 5.5064 -2.0429 2.1758 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752928680.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:13 Heat of formation + Delta-G solvation = 15.643721 kcal Electronic energy + Delta-G solvation = -20631.606555 eV Core-core repulsion = 17474.270806 eV Total energy + Delta-G solvation = -3157.335749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91453 -40.39576 -38.87932 -36.70469 -34.52391 -33.50213 -32.55028 -32.05111 -30.29951 -27.60915 -25.98367 -24.54482 -24.26585 -23.17661 -21.65836 -21.10163 -19.66943 -18.48786 -17.93478 -17.68443 -17.04840 -16.63667 -16.44543 -16.09073 -15.62413 -15.12146 -15.01656 -14.80087 -14.62450 -14.47226 -14.14963 -13.99033 -13.73337 -13.32927 -13.13049 -12.87527 -12.78751 -12.25930 -11.92470 -11.85713 -11.72741 -11.61549 -11.35531 -11.01259 -10.97829 -10.46545 -10.28468 -9.78053 -9.31129 -8.05497 -5.37858 -0.40158 0.19501 1.34288 1.37859 1.43172 1.68915 1.76466 2.44711 2.80318 3.16906 3.26935 3.41377 3.51460 3.57513 3.78188 3.84535 3.90262 3.98666 4.05846 4.20384 4.35487 4.43036 4.50775 4.59132 4.72639 4.73967 4.80964 4.94372 5.01030 5.02052 5.05549 5.12683 5.22905 5.39560 5.61157 5.74652 6.19233 6.32788 6.84863 6.91077 7.05938 7.83228 7.99075 9.16086 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032589 B = 0.003781 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.969042 B = 7404.549122 C = 8081.984095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.061 4.061 3 Si 0.946 3.054 4 H -0.285 1.285 5 H -0.254 1.254 6 H -0.293 1.293 7 C -0.230 4.230 8 H 0.064 0.936 9 N -0.763 5.763 10 C 0.165 3.835 11 C -0.102 4.102 12 H 0.086 0.914 13 C -0.114 4.114 14 C 0.081 3.919 15 N -0.609 5.609 16 C 0.567 3.433 17 O -0.587 6.587 18 C -0.196 4.196 19 C -0.073 4.073 20 C -0.164 4.164 21 C 0.112 3.888 22 N -0.514 5.514 23 C 0.139 3.861 24 C 0.111 3.889 25 H 0.258 0.742 26 H 0.363 0.637 27 H 0.031 0.969 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.196 0.804 34 H 0.187 0.813 35 H 0.193 0.807 36 H 0.150 0.850 37 H 0.049 0.951 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.150 -13.203 -0.619 31.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.253 4.253 3 Si 0.774 3.226 4 H -0.212 1.212 5 H -0.179 1.179 6 H -0.219 1.219 7 C -0.361 4.361 8 H 0.082 0.918 9 N -0.408 5.408 10 C 0.039 3.961 11 C -0.121 4.121 12 H 0.104 0.896 13 C -0.152 4.152 14 C -0.039 4.039 15 N -0.341 5.341 16 C 0.357 3.643 17 O -0.469 6.469 18 C -0.202 4.202 19 C -0.098 4.098 20 C -0.183 4.183 21 C -0.044 4.044 22 N -0.223 5.223 23 C -0.019 4.019 24 C -0.012 4.012 25 H 0.067 0.933 26 H 0.195 0.805 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.213 0.787 34 H 0.204 0.796 35 H 0.209 0.791 36 H 0.167 0.833 37 H 0.067 0.933 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 28.432 -12.358 0.293 31.003 hybrid contribution -1.022 1.368 -0.133 1.713 sum 27.410 -10.990 0.160 29.532 Atomic orbital electron populations 1.69860 1.06945 1.26591 1.59921 1.25421 0.96020 1.00885 1.02940 0.85537 0.78723 0.80449 0.77853 1.21190 1.17922 1.21915 1.19070 0.82725 0.93552 1.40794 0.91849 1.42822 1.02610 1.04410 1.90990 1.20784 0.88863 0.87243 0.99224 1.22491 0.94695 0.99188 0.95739 0.89593 1.22765 0.93055 0.95557 1.03778 1.22969 0.99371 0.87107 0.94448 1.48462 1.08773 1.30796 1.46070 1.18279 0.85004 0.82840 0.78165 1.90779 1.81336 1.25597 1.49150 1.20766 0.93956 1.01449 1.03991 1.23529 0.98340 0.92115 0.95777 1.22662 0.93230 1.02459 0.99939 1.23765 1.01720 0.89285 0.89657 1.67833 1.15990 1.13925 1.24551 1.22875 0.88132 0.97123 0.93805 1.22253 0.80343 1.00006 0.98616 0.93332 0.80458 0.95117 0.93954 0.88914 0.86427 0.87658 0.87457 0.78732 0.79586 0.79058 0.83300 0.93280 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.61 13.97 21.65 0.30 -63.30 16 2 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 3 Si 0.95 47.06 27.74 68.60 1.90 48.96 16 4 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 5 H -0.25 -11.52 6.52 99.48 0.65 -10.87 16 6 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 7 C -0.23 -13.10 10.47 84.03 0.88 -12.22 16 8 H 0.06 3.89 8.06 -2.91 -0.02 3.86 16 9 N -0.76 -35.07 5.30 -343.44 -1.82 -36.89 16 10 C 0.16 5.60 5.71 86.38 0.49 6.10 16 11 C -0.10 -2.53 3.07 -9.40 -0.03 -2.56 16 12 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 13 C -0.11 -1.55 6.42 31.80 0.20 -1.34 16 14 C 0.08 1.00 4.88 86.74 0.42 1.42 16 15 N -0.61 -14.56 3.33 -817.79 -2.72 -17.28 16 16 C 0.57 16.25 7.81 86.78 0.68 16.93 16 17 O -0.59 -22.59 16.62 -3.90 -0.06 -22.66 16 18 C -0.20 -4.24 5.89 -19.99 -0.12 -4.36 16 19 C -0.07 -0.88 8.70 22.73 0.20 -0.68 16 20 C -0.16 -1.30 10.10 22.32 0.23 -1.07 16 21 C 0.11 1.35 11.17 84.71 0.95 2.29 16 22 N -0.51 -10.57 10.35 -194.76 -2.01 -12.58 16 23 C 0.14 3.27 10.77 85.02 0.92 4.19 16 24 C 0.11 3.25 6.26 86.85 0.54 3.79 16 25 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 26 H 0.36 16.43 5.49 -92.71 -0.51 15.92 16 27 H 0.03 1.06 8.03 -2.38 -0.02 1.04 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.09 1.17 8.04 -2.39 -0.02 1.15 16 30 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 0.77 6.74 -2.39 -0.02 0.75 16 32 H 0.11 0.77 6.73 -2.39 -0.02 0.75 16 33 H 0.20 1.19 2.91 -3.95 -0.01 1.18 16 34 H 0.19 -0.14 8.06 -2.91 -0.02 -0.17 16 35 H 0.19 0.90 8.06 -2.91 -0.02 0.88 16 36 H 0.15 3.86 7.68 -2.91 -0.02 3.84 16 37 H 0.05 1.75 7.98 -2.39 -0.02 1.73 16 38 H 0.07 2.08 7.95 -2.39 -0.02 2.06 16 Total: -1.00 -81.95 313.25 1.92 -80.03 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.51 Total: 14.43 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 5.83 Total: 9.30 kcal Atomic # 7 Polarization: -123.81 SS G_CDS: -6.25 Total: -130.06 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.06 Total: -22.66 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.90 Total: 48.96 kcal Total: -81.95 1.92 -80.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752928680.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.672 kcal (2) G-P(sol) polarization free energy of solvation -81.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds