Wall clock time and date at job start Mon Mar 30 2020 02:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99904 * 3 2 1 6 6 H 1.48499 * 109.47209 * 59.99747 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 N 1.46501 * 114.38956 * 139.66712 * 11 10 9 13 13 C 1.34770 * 119.99678 * 111.31428 * 12 11 10 14 14 O 1.21279 * 120.00749 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99724 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47357 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.47357 * 179.97438 * 16 15 13 18 18 C 1.38647 * 120.78567 * 269.72064 * 17 16 15 19 19 C 1.38208 * 119.15992 * 179.79657 * 18 17 16 20 20 N 1.31870 * 120.76267 * 0.48437 * 19 18 17 21 21 C 1.31872 * 121.72688 * 359.74163 * 20 19 18 22 22 C 1.38205 * 120.76274 * 0.02562 * 21 20 19 23 23 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 24 24 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 25 25 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 26 26 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 27 27 H 1.09006 * 114.20377 * 272.47966 * 11 10 9 28 28 H 0.96992 * 119.99736 * 291.31468 * 12 11 10 29 29 H 1.09006 * 109.47124 * 299.99739 * 15 13 12 30 30 H 1.08999 * 109.47058 * 59.99429 * 15 13 12 31 31 H 1.09006 * 109.46595 * 299.99824 * 16 15 13 32 32 H 1.08999 * 109.47698 * 59.99581 * 16 15 13 33 33 H 1.07999 * 120.42286 * 359.97438 * 18 17 16 34 34 H 1.08001 * 119.62141 * 180.19799 * 19 18 17 35 35 H 1.08001 * 119.61962 * 180.02562 * 21 20 19 36 36 H 1.08006 * 120.41690 * 179.97438 * 22 21 20 37 37 H 1.09005 * 113.46156 * 321.64040 * 23 9 7 38 38 H 1.08994 * 113.46837 * 92.01680 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 7 -0.3493 -5.2935 -0.2114 13 6 -1.2232 -5.9355 -1.0116 14 8 -1.4406 -5.5192 -2.1298 15 6 -1.9314 -7.1702 -0.5165 16 6 -2.8594 -7.6997 -1.6116 17 6 -3.5672 -8.9347 -1.1168 18 6 -3.0185 -10.1931 -1.3115 19 6 -3.6943 -11.3027 -0.8400 20 7 -4.8513 -11.1749 -0.2203 21 6 -5.4048 -9.9946 -0.0216 22 6 -4.7850 -8.8401 -0.4610 23 6 1.6797 -3.8155 0.0005 24 1 -0.4849 0.8401 -0.0004 25 1 -0.4897 -2.9528 1.0077 26 1 -0.7251 -2.1596 -0.6083 27 1 0.3751 -4.0237 -1.7798 28 1 -0.1758 -5.6263 0.6830 29 1 -1.1961 -7.9340 -0.2634 30 1 -2.5175 -6.9227 0.3686 31 1 -3.5948 -6.9360 -1.8652 32 1 -2.2731 -7.9473 -2.4965 33 1 -2.0737 -10.3046 -1.8226 34 1 -3.2721 -12.2862 -0.9848 35 1 -6.3535 -9.9294 0.4904 36 1 -5.2437 -7.8763 -0.2956 37 1 2.5452 -4.0479 -0.6200 38 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753381205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:07 Heat of formation + Delta-G solvation = 48.724677 kcal Electronic energy + Delta-G solvation = -19849.777282 eV Core-core repulsion = 16693.876031 eV Total energy + Delta-G solvation = -3155.901251 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.47162 -39.60425 -37.81130 -34.93098 -33.57572 -31.95156 -31.45695 -30.75374 -27.63090 -25.53063 -24.66444 -23.71441 -23.12946 -21.73577 -20.15466 -19.63014 -17.29949 -16.80648 -16.70807 -16.33902 -15.81239 -15.76963 -15.35548 -14.87039 -14.28003 -13.96804 -13.87595 -13.74212 -13.27815 -12.85445 -12.61050 -12.26847 -12.01320 -11.92664 -11.54221 -11.45776 -11.15867 -10.95770 -10.84749 -10.42313 -10.09020 -9.91476 -9.74356 -9.53018 -9.45625 -9.42281 -8.87480 -8.43041 -6.97347 -5.82345 -3.16698 0.86856 0.97323 2.84973 3.34682 3.38227 3.42890 3.44501 3.59390 4.20117 4.36076 4.46071 4.49266 4.76329 4.87246 4.88514 4.97141 5.04923 5.21678 5.34973 5.42059 5.44097 5.47791 5.52632 5.63005 5.75391 5.93202 5.97247 6.15165 6.18715 6.35024 6.44564 6.49984 6.70720 7.16425 7.30184 7.50544 7.70755 7.82463 7.91415 8.49313 8.97274 9.63734 10.54572 11.34849 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052287 B = 0.002654 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.374536 B =10549.004490 C =10754.850676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.916 3.084 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.084 0.916 9 N -0.604 5.604 10 C 0.145 3.855 11 C 0.086 3.914 12 N -0.713 5.713 13 C 0.510 3.490 14 O -0.544 6.544 15 C -0.134 4.134 16 C -0.069 4.069 17 C -0.034 4.034 18 C -0.171 4.171 19 C 0.097 3.903 20 N -0.493 5.493 21 C 0.098 3.902 22 C -0.170 4.170 23 C 0.111 3.889 24 H 0.255 0.745 25 H 0.026 0.974 26 H 0.075 0.925 27 H 0.116 0.884 28 H 0.397 0.603 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.136 0.864 37 H 0.045 0.955 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.935 -20.441 0.479 21.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.204 4.204 3 Si 0.746 3.254 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.217 1.217 7 C -0.348 4.348 8 H 0.102 0.898 9 N -0.330 5.330 10 C 0.018 3.982 11 C -0.019 4.019 12 N -0.363 5.363 13 C 0.296 3.704 14 O -0.421 6.421 15 C -0.175 4.175 16 C -0.107 4.107 17 C -0.042 4.042 18 C -0.190 4.190 19 C -0.059 4.059 20 N -0.202 5.202 21 C -0.058 4.058 22 C -0.190 4.190 23 C -0.017 4.017 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.093 0.907 27 H 0.133 0.867 28 H 0.231 0.769 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.153 0.847 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.154 0.846 37 H 0.063 0.937 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.454 -20.486 -0.038 21.800 hybrid contribution 0.951 1.529 0.418 1.848 sum -6.503 -18.957 0.379 20.045 Atomic orbital electron populations 1.69851 1.05082 1.25451 1.55944 1.24854 0.95745 0.97725 1.02082 0.85986 0.78698 0.83368 0.77331 1.20346 1.21538 1.21656 1.18951 0.90155 0.81026 1.44642 0.89806 1.45283 1.02758 0.99173 1.85825 1.22510 0.89039 0.89925 0.96733 1.23622 0.93945 0.84022 1.00348 1.46033 1.43586 1.29048 1.17644 1.20518 0.79581 0.84754 0.85565 1.90710 1.63813 1.67572 1.20035 1.21630 0.99483 0.96345 1.00016 1.20397 0.98524 0.93801 0.97934 1.20416 0.94110 0.95385 0.94335 1.22115 1.01791 0.92959 1.02182 1.22763 0.90789 0.98903 0.93471 1.67675 1.11200 1.27517 1.13828 1.22774 0.99262 0.87583 0.96229 1.22142 0.96189 1.00568 1.00056 1.22711 0.94951 0.87125 0.96870 0.93541 0.95627 0.90698 0.86662 0.76948 0.88918 0.88774 0.89453 0.89580 0.84696 0.82856 0.82805 0.84588 0.93673 0.94871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.42 11.51 55.49 0.64 -26.78 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.92 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.22 -6.19 10.75 -15.06 -0.16 -6.35 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.60 -15.52 3.78 -184.80 -0.70 -16.22 16 10 C 0.14 3.43 7.22 -8.51 -0.06 3.37 16 11 C 0.09 1.64 4.60 -67.82 -0.31 1.33 16 12 N -0.71 -10.31 5.39 -53.62 -0.29 -10.59 16 13 C 0.51 7.28 7.83 -10.99 -0.09 7.19 16 14 O -0.54 -10.10 15.57 5.56 0.09 -10.02 16 15 C -0.13 -1.27 5.68 -27.88 -0.16 -1.43 16 16 C -0.07 -0.66 4.68 -27.88 -0.13 -0.79 16 17 C -0.03 -0.30 5.17 -104.32 -0.54 -0.84 16 18 C -0.17 -1.38 9.82 -39.44 -0.39 -1.77 16 19 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16 20 N -0.49 -5.02 10.36 -13.25 -0.14 -5.16 16 21 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16 22 C -0.17 -1.42 9.82 -39.44 -0.39 -1.81 16 23 C 0.11 2.20 8.45 -8.52 -0.07 2.12 16 24 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 2.03 7.12 -51.93 -0.37 1.66 16 27 H 0.12 2.43 7.45 -51.93 -0.39 2.04 16 28 H 0.40 4.51 8.76 -40.82 -0.36 4.15 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 0.92 8.06 -51.93 -0.42 0.50 16 32 H 0.09 0.86 8.06 -51.93 -0.42 0.45 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 327.90 15.07 4.94 4.94 Total: -1.00 -34.41 327.90 -8.57 -42.98 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.30 Total: 1.78 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.78 Total: 2.02 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.49 Total: -58.75 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.41 -8.57 -42.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753381205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.705 kcal (2) G-P(sol) polarization free energy of solvation -34.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds