Wall clock time and date at job start Mon Mar 30 2020 02:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99904 * 3 2 1 6 6 H 1.48499 * 109.47209 * 59.99747 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 N 1.46501 * 114.38956 * 139.66712 * 11 10 9 13 13 C 1.34770 * 119.99678 * 111.31428 * 12 11 10 14 14 O 1.21279 * 120.00749 * 359.97438 * 13 12 11 15 15 C 1.50705 * 119.99724 * 180.02562 * 13 12 11 16 16 C 1.52996 * 109.47357 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.47357 * 179.97438 * 16 15 13 18 18 C 1.38647 * 120.78567 * 269.72064 * 17 16 15 19 19 C 1.38208 * 119.15992 * 179.79657 * 18 17 16 20 20 N 1.31870 * 120.76267 * 0.48437 * 19 18 17 21 21 C 1.31872 * 121.72688 * 359.74163 * 20 19 18 22 22 C 1.38205 * 120.76274 * 0.02562 * 21 20 19 23 23 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 24 24 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 25 25 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 26 26 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 27 27 H 1.09006 * 114.20377 * 272.47966 * 11 10 9 28 28 H 0.96992 * 119.99736 * 291.31468 * 12 11 10 29 29 H 1.09006 * 109.47124 * 299.99739 * 15 13 12 30 30 H 1.08999 * 109.47058 * 59.99429 * 15 13 12 31 31 H 1.09006 * 109.46595 * 299.99824 * 16 15 13 32 32 H 1.08999 * 109.47698 * 59.99581 * 16 15 13 33 33 H 1.07999 * 120.42286 * 359.97438 * 18 17 16 34 34 H 1.08001 * 119.62141 * 180.19799 * 19 18 17 35 35 H 1.08001 * 119.61962 * 180.02562 * 21 20 19 36 36 H 1.08006 * 120.41690 * 179.97438 * 22 21 20 37 37 H 1.09005 * 113.46156 * 321.64040 * 23 9 7 38 38 H 1.08994 * 113.46837 * 92.01680 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 7 -0.3493 -5.2935 -0.2114 13 6 -1.2232 -5.9355 -1.0116 14 8 -1.4406 -5.5192 -2.1298 15 6 -1.9314 -7.1702 -0.5165 16 6 -2.8594 -7.6997 -1.6116 17 6 -3.5672 -8.9347 -1.1168 18 6 -3.0185 -10.1931 -1.3115 19 6 -3.6943 -11.3027 -0.8400 20 7 -4.8513 -11.1749 -0.2203 21 6 -5.4048 -9.9946 -0.0216 22 6 -4.7850 -8.8401 -0.4610 23 6 1.6797 -3.8155 0.0005 24 1 -0.4849 0.8401 -0.0004 25 1 -0.4897 -2.9528 1.0077 26 1 -0.7251 -2.1596 -0.6083 27 1 0.3751 -4.0237 -1.7798 28 1 -0.1758 -5.6263 0.6830 29 1 -1.1961 -7.9340 -0.2634 30 1 -2.5175 -6.9227 0.3686 31 1 -3.5948 -6.9360 -1.8652 32 1 -2.2731 -7.9473 -2.4965 33 1 -2.0737 -10.3046 -1.8226 34 1 -3.2721 -12.2862 -0.9848 35 1 -6.3535 -9.9294 0.4904 36 1 -5.2437 -7.8763 -0.2956 37 1 2.5452 -4.0479 -0.6200 38 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753381205.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:06 Heat of formation + Delta-G solvation = 24.771264 kcal Electronic energy + Delta-G solvation = -19850.815980 eV Core-core repulsion = 16693.876031 eV Total energy + Delta-G solvation = -3156.939949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.24536 -40.82980 -39.39136 -35.71485 -35.13678 -33.81918 -32.05483 -31.60661 -29.48907 -26.58516 -26.41937 -24.76368 -24.32228 -22.57836 -21.45593 -21.17110 -18.79835 -18.23140 -17.40156 -17.29058 -17.14948 -16.94616 -16.38030 -16.27636 -15.74337 -15.26432 -14.78436 -14.66601 -14.51763 -14.05928 -13.90026 -13.37999 -13.29163 -13.16339 -13.07260 -12.86013 -12.71692 -12.60508 -12.25268 -11.94877 -11.89002 -11.41697 -10.95834 -10.91296 -10.42515 -10.36829 -10.02454 -9.89254 -9.00416 -7.95050 -5.30657 0.26722 0.32183 1.44937 1.46787 1.57198 1.69325 2.18920 2.49421 2.92811 3.26628 3.42288 3.61741 3.68304 3.79540 3.87478 3.94542 4.19694 4.27547 4.28009 4.32759 4.37371 4.52775 4.67006 4.73226 4.79898 4.85316 4.88211 4.99922 5.11406 5.15719 5.19280 5.24373 5.44888 5.50137 5.71446 5.85109 5.87122 6.65913 6.84942 7.09083 7.35441 7.54661 8.52668 9.22575 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052287 B = 0.002654 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.374536 B =10549.004490 C =10754.850676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.293 1.293 6 H -0.291 1.291 7 C -0.229 4.229 8 H 0.092 0.908 9 N -0.640 5.640 10 C 0.143 3.857 11 C 0.116 3.884 12 N -0.702 5.702 13 C 0.509 3.491 14 O -0.590 6.590 15 C -0.120 4.120 16 C -0.063 4.063 17 C -0.041 4.041 18 C -0.170 4.170 19 C 0.088 3.912 20 N -0.520 5.520 21 C 0.088 3.912 22 C -0.174 4.174 23 C 0.120 3.880 24 H 0.249 0.751 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.093 0.907 28 H 0.417 0.583 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.154 0.846 34 H 0.175 0.825 35 H 0.172 0.828 36 H 0.148 0.852 37 H 0.058 0.942 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.969 -22.216 1.375 23.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.264 4.264 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.220 1.220 6 H -0.218 1.218 7 C -0.357 4.357 8 H 0.110 0.890 9 N -0.366 5.366 10 C 0.016 3.984 11 C 0.009 3.991 12 N -0.353 5.353 13 C 0.297 3.703 14 O -0.471 6.471 15 C -0.160 4.160 16 C -0.101 4.101 17 C -0.049 4.049 18 C -0.190 4.190 19 C -0.068 4.068 20 N -0.229 5.229 21 C -0.068 4.068 22 C -0.193 4.193 23 C -0.006 4.006 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.111 0.889 28 H 0.254 0.746 29 H 0.141 0.859 30 H 0.133 0.867 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.172 0.828 34 H 0.192 0.808 35 H 0.190 0.810 36 H 0.166 0.834 37 H 0.076 0.924 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.467 -22.330 0.892 23.265 hybrid contribution 0.620 1.985 0.119 2.083 sum -5.846 -20.345 1.010 21.193 Atomic orbital electron populations 1.70055 1.06708 1.25716 1.57858 1.25767 0.96628 1.01315 1.02696 0.84910 0.78308 0.78809 0.76687 1.18429 1.22020 1.21776 1.19392 0.90875 0.82332 1.43099 0.88991 1.45617 1.03875 1.00949 1.86183 1.22467 0.87947 0.91601 0.96432 1.22826 0.93596 0.84002 0.98656 1.45801 1.43335 1.27437 1.18749 1.21393 0.78681 0.85521 0.84681 1.90703 1.65066 1.69032 1.22263 1.21618 0.99814 0.94252 1.00293 1.20287 0.98162 0.93835 0.97832 1.20381 0.94427 0.95249 0.94851 1.22322 1.02414 0.92465 1.01762 1.23164 0.90455 1.00113 0.93062 1.67696 1.12151 1.28334 1.14761 1.23115 1.00011 0.87353 0.96339 1.22315 0.96132 1.01118 0.99782 1.22829 0.95436 0.83828 0.98518 0.94240 0.95467 0.95308 0.88870 0.74594 0.85903 0.86702 0.90884 0.90234 0.82845 0.80790 0.81050 0.83393 0.92363 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.91 11.51 21.65 0.25 -58.66 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 3 Si 0.99 45.86 29.55 68.60 2.03 47.88 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 7 C -0.23 -12.87 10.75 84.03 0.90 -11.96 16 8 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 9 N -0.64 -32.85 3.78 -738.57 -2.79 -35.64 16 10 C 0.14 6.88 7.22 83.18 0.60 7.48 16 11 C 0.12 4.37 4.60 45.46 0.21 4.58 16 12 N -0.70 -18.85 5.39 -441.97 -2.38 -21.23 16 13 C 0.51 13.69 7.83 87.66 0.69 14.38 16 14 O -0.59 -21.90 15.57 -3.03 -0.05 -21.94 16 15 C -0.12 -1.92 5.68 29.85 0.17 -1.75 16 16 C -0.06 -1.10 4.68 29.85 0.14 -0.96 16 17 C -0.04 -0.63 5.17 -19.67 -0.10 -0.74 16 18 C -0.17 -2.35 9.82 22.36 0.22 -2.13 16 19 C 0.09 1.33 11.18 84.68 0.95 2.28 16 20 N -0.52 -9.79 10.36 -195.84 -2.03 -11.82 16 21 C 0.09 1.40 11.18 84.68 0.95 2.34 16 22 C -0.17 -2.61 9.82 22.36 0.22 -2.39 16 23 C 0.12 4.52 8.45 83.17 0.70 5.22 16 24 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 25 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.03 1.63 7.12 -2.39 -0.02 1.61 16 27 H 0.09 3.98 7.45 -2.38 -0.02 3.97 16 28 H 0.42 8.05 8.76 -92.71 -0.81 7.24 16 29 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.48 8.06 -2.38 -0.02 1.46 16 32 H 0.08 1.49 8.06 -2.39 -0.02 1.47 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 34 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 36 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.06 2.06 8.14 -2.38 -0.02 2.05 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -76.81 327.90 1.38 -75.43 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.25 Total: 13.27 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 6.11 Total: 12.72 kcal Atomic # 7 Polarization: -120.40 SS G_CDS: -6.96 Total: -127.36 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -76.81 1.38 -75.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753381205.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.197 kcal (2) G-P(sol) polarization free energy of solvation -76.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds