Wall clock time and date at job start Mon Mar 30 2020 02:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99529 * 2 1 4 4 H 1.48502 * 109.47117 * 269.99718 * 3 2 1 5 5 H 1.48495 * 109.47397 * 29.99879 * 3 2 1 6 6 H 1.48498 * 109.47039 * 150.00111 * 3 2 1 7 7 C 1.38807 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99892 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00084 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00101 * 184.95651 * 9 7 2 11 11 C 1.53005 * 115.55059 * 304.81066 * 10 9 7 12 12 N 1.46498 * 109.46875 * 279.52671 * 11 10 9 13 13 C 1.34772 * 119.99766 * 175.01565 * 12 11 10 14 14 O 1.21792 * 120.00335 * 0.02562 * 13 12 11 15 15 C 1.41520 * 120.00243 * 179.97438 * 13 12 11 16 16 C 1.35606 * 120.00179 * 196.98210 * 15 13 12 17 17 C 1.41678 * 120.00216 * 27.29387 * 16 15 13 18 18 C 1.38284 * 126.25704 * 186.80847 * 17 16 15 19 19 C 1.39788 * 107.07400 * 179.97438 * 18 17 16 20 20 C 1.35501 * 107.91333 * 0.02562 * 19 18 17 21 21 N 1.35754 * 108.91028 * 359.97438 * 20 19 18 22 22 H 0.97003 * 125.69569 * 180.02562 * 21 20 19 23 23 C 1.53003 * 117.49686 * 90.47913 * 10 9 7 24 24 C 1.53000 * 117.50015 * 159.13389 * 10 9 7 25 25 H 0.96998 * 120.00301 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99979 * 4.96257 * 9 7 2 27 27 H 1.09001 * 109.46709 * 159.52597 * 11 10 9 28 28 H 1.08995 * 109.46954 * 39.53242 * 11 10 9 29 29 H 0.96996 * 120.00120 * 355.01940 * 12 11 10 30 30 H 1.08001 * 119.99593 * 16.98954 * 15 13 12 31 31 H 1.08005 * 120.00148 * 207.29560 * 16 15 13 32 32 H 1.07988 * 126.46468 * 0.24006 * 18 17 16 33 33 H 1.08005 * 126.04552 * 180.02562 * 19 18 17 34 34 H 1.08004 * 125.54967 * 180.02562 * 20 19 18 35 35 H 1.09001 * 117.49698 * 215.00597 * 23 10 9 36 36 H 1.09002 * 117.49851 * 0.02562 * 23 10 9 37 37 H 1.09000 * 117.49795 * 359.97438 * 24 10 9 38 38 H 1.08997 * 117.49873 * 144.97242 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4660 -0.1090 11 6 3.7602 -3.5252 0.9375 12 7 4.4648 -3.2297 2.1874 13 6 4.2291 -3.9739 3.2860 14 8 3.4306 -4.8924 3.2396 15 6 4.9102 -3.6889 4.4934 16 6 4.9492 -4.6136 5.4845 17 6 4.8553 -5.9921 5.1713 18 6 4.7487 -7.0312 6.0775 19 6 4.6822 -8.2155 5.3379 20 6 4.7482 -7.8907 4.0240 21 7 4.8534 -6.5421 3.9090 22 1 4.9165 -6.0483 3.0765 23 6 4.4747 -2.9535 -1.5133 24 6 5.5635 -2.4023 -0.5893 25 1 -0.4850 0.8400 -0.0004 26 1 3.8647 -0.3650 0.0719 27 1 4.0604 -4.5082 0.5747 28 1 2.6849 -3.5165 1.1157 29 1 5.1010 -2.4984 2.2244 30 1 5.3988 -2.7348 4.6254 31 1 5.0518 -4.2992 6.5127 32 1 4.7178 -6.9439 7.1534 33 1 4.5939 -9.2132 5.7421 34 1 4.7206 -8.5906 3.2019 35 1 4.4624 -4.0288 -1.6915 36 1 4.1686 -2.3335 -2.3559 37 1 5.9731 -1.4200 -0.8245 38 1 6.2676 -3.1146 -0.1593 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754512846.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:07 Heat of formation + Delta-G solvation = 92.590765 kcal Electronic energy + Delta-G solvation = -20780.052412 eV Core-core repulsion = 17626.053337 eV Total energy + Delta-G solvation = -3153.999075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27891 -39.46077 -37.75010 -33.95406 -33.66459 -33.09324 -30.86088 -30.42134 -28.69358 -26.63132 -23.70642 -23.28057 -22.00716 -20.71626 -20.33720 -19.80289 -19.13117 -17.86048 -17.72731 -16.34670 -15.80375 -15.23374 -14.66260 -14.29310 -14.28096 -14.11647 -14.00577 -13.55444 -13.27121 -12.81361 -12.74339 -12.47152 -12.27359 -12.07994 -11.94159 -11.31882 -11.15841 -11.05766 -10.55835 -10.26160 -9.95849 -9.80549 -9.70037 -9.54970 -8.97093 -8.85223 -8.63902 -7.53031 -7.38764 -5.85913 -3.24690 0.60072 2.65790 3.01726 3.27413 3.31157 3.37657 3.42955 3.44629 3.66551 4.34652 4.48672 4.90033 4.98672 5.03571 5.08534 5.19086 5.31999 5.36952 5.43949 5.46881 5.54192 5.64294 5.88683 5.91019 5.98334 6.11988 6.21673 6.29303 6.30359 6.33550 6.54558 6.59481 6.73148 6.96424 7.13883 7.64005 7.77989 7.88764 8.32258 8.43373 9.08335 9.79609 9.97004 11.31613 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024472 B = 0.004201 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.866901 B = 6664.140791 C = 7054.256685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.093 0.907 9 N -0.712 5.712 10 C 0.138 3.862 11 C 0.147 3.853 12 N -0.707 5.707 13 C 0.538 3.462 14 O -0.555 6.555 15 C -0.272 4.272 16 C 0.033 3.967 17 C 0.008 3.992 18 C -0.151 4.151 19 C -0.219 4.219 20 C 0.017 3.983 21 N -0.510 5.510 22 H 0.419 0.581 23 C -0.190 4.190 24 C -0.192 4.192 25 H 0.261 0.739 26 H 0.366 0.634 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.400 0.600 30 H 0.134 0.866 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.162 0.838 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.426 -10.933 8.091 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.186 4.186 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.111 0.889 9 N -0.353 5.353 10 C 0.044 3.956 11 C 0.022 3.978 12 N -0.356 5.356 13 C 0.330 3.670 14 O -0.438 6.438 15 C -0.294 4.294 16 C 0.012 3.988 17 C -0.104 4.104 18 C -0.177 4.177 19 C -0.243 4.243 20 C -0.122 4.122 21 N -0.108 5.108 22 H 0.263 0.737 23 C -0.231 4.231 24 C -0.230 4.230 25 H 0.071 0.929 26 H 0.200 0.800 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.234 0.766 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.179 0.821 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.572 -11.442 7.843 20.119 hybrid contribution 0.700 2.011 -0.440 2.174 sum 15.273 -9.431 7.404 19.417 Atomic orbital electron populations 1.69695 1.05096 1.25978 1.56600 1.24671 0.95204 0.97150 1.01571 0.86563 0.79049 0.85096 0.77777 1.21012 1.21604 1.20512 1.18972 0.80009 0.94879 1.43803 0.88928 1.42161 1.03905 1.00994 1.88230 1.20053 0.92346 0.89736 0.93440 1.21168 0.98772 0.95535 0.82331 1.46007 1.43989 1.34941 1.10646 1.17241 0.83396 0.82525 0.83866 1.90857 1.36563 1.31258 1.85087 1.21939 1.08105 1.03239 0.96109 1.20740 0.89741 0.89380 0.98910 1.18244 1.14366 0.93239 0.84553 1.21422 1.06153 0.91741 0.98335 1.20771 1.12320 0.98624 0.92573 1.22069 1.06645 0.84683 0.98762 1.42820 1.52644 1.06755 1.08535 0.73704 1.23453 1.03046 1.00269 0.96357 1.23132 0.91706 1.02431 1.05708 0.92866 0.80010 0.92393 0.89500 0.76627 0.84775 0.83726 0.84355 0.84719 0.82052 0.89626 0.88553 0.89181 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.97 55.49 0.78 -28.02 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 21.50 27.79 -169.99 -4.72 16.78 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.28 6.45 56.52 0.36 -5.92 16 7 C -0.25 -6.75 9.94 -15.06 -0.15 -6.90 16 8 H 0.09 2.77 7.38 -52.49 -0.39 2.38 16 9 N -0.71 -15.91 5.34 -47.23 -0.25 -16.16 16 10 C 0.14 2.47 2.27 -131.82 -0.30 2.17 16 11 C 0.15 2.56 5.66 -4.04 -0.02 2.54 16 12 N -0.71 -10.70 5.51 -63.25 -0.35 -11.05 16 13 C 0.54 8.45 6.04 -15.01 -0.09 8.36 16 14 O -0.55 -10.47 12.85 5.11 0.07 -10.40 16 15 C -0.27 -3.40 9.77 -39.27 -0.38 -3.78 16 16 C 0.03 0.38 9.79 -39.21 -0.38 0.00 16 17 C 0.01 0.10 6.00 -83.90 -0.50 -0.40 16 18 C -0.15 -1.81 10.86 -38.99 -0.42 -2.23 16 19 C -0.22 -2.54 10.81 -39.98 -0.43 -2.97 16 20 C 0.02 0.20 11.90 -16.79 -0.20 0.00 16 21 N -0.51 -6.90 4.52 -10.56 -0.05 -6.95 16 22 H 0.42 5.81 5.84 -40.82 -0.24 5.57 16 23 C -0.19 -3.04 10.11 -26.70 -0.27 -3.31 16 24 C -0.19 -2.70 10.05 -26.70 -0.27 -2.97 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 26 H 0.37 8.02 5.86 -40.82 -0.24 7.78 16 27 H 0.06 0.91 7.94 -51.93 -0.41 0.49 16 28 H 0.09 1.88 7.03 -51.93 -0.36 1.51 16 29 H 0.40 5.30 8.36 -40.82 -0.34 4.96 16 30 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.15 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.16 1.45 8.06 -52.48 -0.42 1.02 16 35 H 0.09 1.21 8.08 -51.93 -0.42 0.79 16 36 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 322.83 15.07 4.86 4.86 Total: -1.00 -33.31 322.83 -8.15 -41.45 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -4.96 Total: 18.79 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -3.52 Total: -9.31 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.13 Total: -62.18 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.07 Total: -10.40 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.72 Total: 16.78 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.31 -8.15 -41.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754512846.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.043 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds