Wall clock time and date at job start Mon Mar 30 2020 02:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99529 * 2 1 4 4 H 1.48502 * 109.47117 * 269.99718 * 3 2 1 5 5 H 1.48495 * 109.47397 * 29.99879 * 3 2 1 6 6 H 1.48498 * 109.47039 * 150.00111 * 3 2 1 7 7 C 1.38807 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99892 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00084 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00101 * 184.95651 * 9 7 2 11 11 C 1.53005 * 115.55059 * 304.81066 * 10 9 7 12 12 N 1.46498 * 109.46875 * 279.52671 * 11 10 9 13 13 C 1.34772 * 119.99766 * 175.01565 * 12 11 10 14 14 O 1.21792 * 120.00335 * 0.02562 * 13 12 11 15 15 C 1.41520 * 120.00243 * 179.97438 * 13 12 11 16 16 C 1.35606 * 120.00179 * 196.98210 * 15 13 12 17 17 C 1.41678 * 120.00216 * 27.29387 * 16 15 13 18 18 C 1.38284 * 126.25704 * 186.80847 * 17 16 15 19 19 C 1.39788 * 107.07400 * 179.97438 * 18 17 16 20 20 C 1.35501 * 107.91333 * 0.02562 * 19 18 17 21 21 N 1.35754 * 108.91028 * 359.97438 * 20 19 18 22 22 H 0.97003 * 125.69569 * 180.02562 * 21 20 19 23 23 C 1.53003 * 117.49686 * 90.47913 * 10 9 7 24 24 C 1.53000 * 117.50015 * 159.13389 * 10 9 7 25 25 H 0.96998 * 120.00301 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99979 * 4.96257 * 9 7 2 27 27 H 1.09001 * 109.46709 * 159.52597 * 11 10 9 28 28 H 1.08995 * 109.46954 * 39.53242 * 11 10 9 29 29 H 0.96996 * 120.00120 * 355.01940 * 12 11 10 30 30 H 1.08001 * 119.99593 * 16.98954 * 15 13 12 31 31 H 1.08005 * 120.00148 * 207.29560 * 16 15 13 32 32 H 1.07988 * 126.46468 * 0.24006 * 18 17 16 33 33 H 1.08005 * 126.04552 * 180.02562 * 19 18 17 34 34 H 1.08004 * 125.54967 * 180.02562 * 20 19 18 35 35 H 1.09001 * 117.49698 * 215.00597 * 23 10 9 36 36 H 1.09002 * 117.49851 * 0.02562 * 23 10 9 37 37 H 1.09000 * 117.49795 * 359.97438 * 24 10 9 38 38 H 1.08997 * 117.49873 * 144.97242 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4660 -0.1090 11 6 3.7602 -3.5252 0.9375 12 7 4.4648 -3.2297 2.1874 13 6 4.2291 -3.9739 3.2860 14 8 3.4306 -4.8924 3.2396 15 6 4.9102 -3.6889 4.4934 16 6 4.9492 -4.6136 5.4845 17 6 4.8553 -5.9921 5.1713 18 6 4.7487 -7.0312 6.0775 19 6 4.6822 -8.2155 5.3379 20 6 4.7482 -7.8907 4.0240 21 7 4.8534 -6.5421 3.9090 22 1 4.9165 -6.0483 3.0765 23 6 4.4747 -2.9535 -1.5133 24 6 5.5635 -2.4023 -0.5893 25 1 -0.4850 0.8400 -0.0004 26 1 3.8647 -0.3650 0.0719 27 1 4.0604 -4.5082 0.5747 28 1 2.6849 -3.5165 1.1157 29 1 5.1010 -2.4984 2.2244 30 1 5.3988 -2.7348 4.6254 31 1 5.0518 -4.2992 6.5127 32 1 4.7178 -6.9439 7.1534 33 1 4.5939 -9.2132 5.7421 34 1 4.7206 -8.5906 3.2019 35 1 4.4624 -4.0288 -1.6915 36 1 4.1686 -2.3335 -2.3559 37 1 5.9731 -1.4200 -0.8245 38 1 6.2676 -3.1146 -0.1593 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754512846.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:06 Heat of formation + Delta-G solvation = 68.792172 kcal Electronic energy + Delta-G solvation = -20781.084397 eV Core-core repulsion = 17626.053337 eV Total energy + Delta-G solvation = -3155.031060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.24444 -40.64109 -39.13804 -35.38028 -34.86229 -34.67578 -32.40286 -31.78464 -29.73474 -27.82616 -25.70282 -24.36880 -23.22729 -21.75477 -21.23467 -21.01729 -20.42507 -19.79179 -18.96691 -17.48983 -17.19617 -16.50133 -16.20919 -15.82504 -15.51941 -15.10895 -15.03301 -14.78334 -14.66373 -14.31402 -14.11725 -13.76631 -13.45050 -13.12491 -13.10803 -12.97270 -12.81615 -12.32961 -12.21682 -11.91812 -11.78455 -11.15451 -11.08906 -10.84905 -10.65570 -10.09183 -9.69963 -9.30808 -8.45995 -8.05123 -5.41097 -0.34513 1.33497 1.39282 1.45960 1.68967 2.03441 2.28855 2.44903 2.49021 2.64432 3.02479 3.26669 3.37586 3.76452 4.06189 4.11973 4.15494 4.24830 4.35809 4.50144 4.54839 4.68738 4.70079 4.77276 4.81167 5.00684 5.08760 5.13096 5.14517 5.33017 5.41022 5.43545 5.48558 5.75084 6.08496 6.18197 6.24088 6.63390 6.68361 7.03758 7.27102 7.77391 7.96612 9.16452 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024472 B = 0.004201 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.866901 B = 6664.140791 C = 7054.256685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.064 4.064 3 Si 0.960 3.040 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.246 1.246 7 C -0.225 4.225 8 H 0.049 0.951 9 N -0.714 5.714 10 C 0.100 3.900 11 C 0.161 3.839 12 N -0.701 5.701 13 C 0.533 3.467 14 O -0.596 6.596 15 C -0.293 4.293 16 C 0.048 3.952 17 C -0.027 4.027 18 C -0.152 4.152 19 C -0.230 4.230 20 C 0.006 3.994 21 N -0.523 5.523 22 H 0.414 0.586 23 C -0.193 4.193 24 C -0.147 4.147 25 H 0.258 0.742 26 H 0.371 0.629 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.411 0.589 30 H 0.161 0.839 31 H 0.182 0.818 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.184 0.816 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.907 -10.888 9.056 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.787 3.213 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.170 1.170 7 C -0.356 4.356 8 H 0.067 0.933 9 N -0.356 5.356 10 C 0.008 3.992 11 C 0.035 3.965 12 N -0.350 5.350 13 C 0.327 3.673 14 O -0.482 6.482 15 C -0.315 4.315 16 C 0.028 3.972 17 C -0.137 4.137 18 C -0.177 4.177 19 C -0.254 4.254 20 C -0.132 4.132 21 N -0.119 5.119 22 H 0.257 0.743 23 C -0.233 4.233 24 C -0.184 4.184 25 H 0.066 0.934 26 H 0.205 0.795 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.247 0.753 30 H 0.179 0.821 31 H 0.199 0.801 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.201 0.799 35 H 0.123 0.877 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.145 -11.420 8.813 23.180 hybrid contribution -0.390 1.739 -0.715 1.921 sum 17.755 -9.680 8.098 21.784 Atomic orbital electron populations 1.69905 1.07400 1.26723 1.59513 1.25547 0.96078 1.01445 1.02493 0.85340 0.78660 0.79228 0.78025 1.20517 1.22637 1.17017 1.18835 0.82417 0.93096 1.41238 0.93287 1.42006 1.02032 1.03045 1.88536 1.20304 0.95640 0.88485 0.94742 1.20830 0.95738 0.96471 0.83435 1.45906 1.43857 1.35367 1.09896 1.17785 0.83092 0.81706 0.84667 1.90833 1.38526 1.33054 1.85749 1.21978 1.09798 1.04947 0.94758 1.21232 0.87059 0.88531 1.00402 1.18766 1.15727 0.94473 0.84782 1.21864 1.04773 0.91517 0.99569 1.21163 1.11972 0.99694 0.92527 1.22633 1.05954 0.84644 0.99995 1.42935 1.53044 1.07333 1.08600 0.74324 1.23474 1.03896 1.01371 0.94590 1.23253 0.89634 1.03562 1.01959 0.93361 0.79452 0.90703 0.95105 0.75297 0.82105 0.80110 0.81943 0.82596 0.79886 0.87740 0.90009 0.87979 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.96 13.97 21.65 0.30 -63.65 16 2 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.96 44.69 27.79 68.60 1.91 46.59 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.25 -9.96 6.45 99.48 0.64 -9.31 16 7 C -0.23 -12.72 9.94 84.03 0.84 -11.88 16 8 H 0.05 3.14 7.38 -2.91 -0.02 3.12 16 9 N -0.71 -31.55 5.34 -303.35 -1.62 -33.17 16 10 C 0.10 3.46 2.27 3.61 0.01 3.47 16 11 C 0.16 5.67 5.66 86.38 0.49 6.15 16 12 N -0.70 -20.71 5.51 -472.21 -2.60 -23.31 16 13 C 0.53 16.62 6.04 85.05 0.51 17.13 16 14 O -0.60 -23.04 12.85 -4.64 -0.06 -23.10 16 15 C -0.29 -6.84 9.77 22.47 0.22 -6.62 16 16 C 0.05 1.01 9.79 22.51 0.22 1.23 16 17 C -0.03 -0.66 6.00 39.08 0.23 -0.43 16 18 C -0.15 -3.34 10.86 22.66 0.25 -3.09 16 19 C -0.23 -4.94 10.81 22.01 0.24 -4.70 16 20 C 0.01 0.13 11.90 83.45 0.99 1.13 16 21 N -0.52 -13.85 4.52 -187.32 -0.85 -14.69 16 22 H 0.41 11.48 5.84 -92.71 -0.54 10.94 16 23 C -0.19 -5.78 10.11 30.62 0.31 -5.47 16 24 C -0.15 -3.56 10.05 30.62 0.31 -3.25 16 25 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 26 H 0.37 15.43 5.86 -92.70 -0.54 14.89 16 27 H 0.07 2.33 7.94 -2.39 -0.02 2.31 16 28 H 0.03 1.42 7.03 -2.39 -0.02 1.40 16 29 H 0.41 10.07 8.36 -92.71 -0.77 9.29 16 30 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.16 2.61 8.06 -2.92 -0.02 2.58 16 33 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 34 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.10 2.72 8.08 -2.39 -0.02 2.70 16 36 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -76.98 322.83 1.34 -75.65 By element: Atomic # 1 Polarization: 46.17 SS G_CDS: -0.83 Total: 45.34 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 5.08 Total: -9.66 kcal Atomic # 7 Polarization: -130.06 SS G_CDS: -4.76 Total: -134.83 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.06 Total: -23.10 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.91 Total: 46.59 kcal Total: -76.98 1.34 -75.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754512846.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.438 kcal (2) G-P(sol) polarization free energy of solvation -76.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds