Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48509 * 109.47184 * 240.00290 * 3 2 1 5 5 H 1.48498 * 109.47356 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47274 * 120.00275 * 3 2 1 7 7 C 1.38814 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99415 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00249 * 359.97438 * 7 2 1 10 10 C 1.46490 * 119.99735 * 176.89657 * 9 7 2 11 11 C 1.53004 * 115.55297 * 294.99587 * 10 9 7 12 12 N 1.46492 * 109.47156 * 324.37077 * 11 10 9 13 13 C 1.34778 * 120.00260 * 174.41802 * 12 11 10 14 14 O 1.21785 * 119.99458 * 0.02562 * 13 12 11 15 15 C 1.41508 * 120.00201 * 179.97438 * 13 12 11 16 16 C 1.35618 * 120.00188 * 179.97438 * 15 13 12 17 17 C 1.41676 * 120.00520 * 179.97438 * 16 15 13 18 18 C 1.38279 * 126.26085 * 179.69172 * 17 16 15 19 19 C 1.39792 * 107.07608 * 179.88688 * 18 17 16 20 20 C 1.35497 * 107.91095 * 0.38322 * 19 18 17 21 21 N 1.35756 * 108.91285 * 359.76391 * 20 19 18 22 22 H 0.96997 * 125.69252 * 179.97438 * 21 20 19 23 23 C 1.53009 * 117.49892 * 149.33057 * 10 9 7 24 24 C 1.53000 * 117.50294 * 80.67431 * 10 9 7 25 25 H 0.96997 * 120.00046 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99640 * 356.62151 * 9 7 2 27 27 H 1.09000 * 109.46538 * 84.37153 * 11 10 9 28 28 H 1.08999 * 109.47216 * 204.36692 * 11 10 9 29 29 H 0.97004 * 120.00407 * 354.41815 * 12 11 10 30 30 H 1.08001 * 120.00099 * 0.02562 * 15 13 12 31 31 H 1.08001 * 119.99713 * 0.02562 * 16 15 13 32 32 H 1.07998 * 126.46028 * 0.02612 * 18 17 16 33 33 H 1.07995 * 126.04057 * 180.10929 * 19 18 17 34 34 H 1.07997 * 125.54753 * 179.74275 * 20 19 18 35 35 H 1.08997 * 117.49653 * 0.02562 * 23 10 9 36 36 H 1.08999 * 117.49777 * 145.01936 * 23 10 9 37 37 H 1.08997 * 117.50087 * 214.98015 * 24 10 9 38 38 H 1.09007 * 117.49636 * 359.96755 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0564 -3.6558 -0.0698 11 6 2.8313 -3.9008 -1.3661 12 7 2.0825 -3.3439 -2.4954 13 6 2.6256 -3.3420 -3.7289 14 8 3.7388 -3.8038 -3.9047 15 6 1.9021 -2.8045 -4.8198 16 6 2.4488 -2.8022 -6.0609 17 6 1.7243 -2.2645 -7.1532 18 6 2.1567 -2.1909 -8.4645 19 6 1.1300 -1.5947 -9.2025 20 6 0.1146 -1.3122 -8.3509 21 7 0.4631 -1.7142 -7.1019 22 1 -0.0848 -1.6280 -6.3062 23 6 1.4315 -4.8702 0.6199 24 6 2.6626 -4.1937 1.2280 25 1 -0.4850 0.8400 0.0004 26 1 0.3569 -2.3888 0.0493 27 1 3.8065 -3.4180 -1.3032 28 1 2.9654 -4.9727 -1.5122 29 1 1.1958 -2.9764 -2.3554 30 1 0.9148 -2.3954 -4.6638 31 1 3.4363 -3.2109 -6.2167 32 1 3.1074 -2.5319 -8.8469 33 1 1.1453 -1.3910 -10.2629 34 1 -0.8197 -0.8431 -8.6216 35 1 0.4763 -4.7260 1.1248 36 1 1.5727 -5.8437 0.1504 37 1 3.6132 -4.7223 1.1582 38 1 2.5179 -3.6040 2.1333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754512847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = 64.014224 kcal Electronic energy + Delta-G solvation = -20340.332313 eV Core-core repulsion = 17185.094066 eV Total energy + Delta-G solvation = -3155.238247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.16306 -39.33723 -37.50886 -33.76774 -33.45877 -33.13456 -31.14587 -29.74282 -28.80808 -26.42172 -23.96712 -23.17338 -21.85425 -20.87251 -20.31764 -19.50636 -18.86465 -17.66316 -17.15273 -16.60525 -15.77764 -14.93548 -14.62859 -14.30321 -14.28067 -13.95720 -13.84045 -13.64868 -13.18313 -13.11353 -12.47374 -12.38785 -12.17878 -11.97598 -11.84044 -11.02894 -10.95063 -10.92456 -10.35945 -10.31570 -10.21492 -9.79899 -9.52538 -9.35102 -9.07735 -8.91396 -8.39108 -7.65228 -7.15740 -5.90661 -3.21461 0.78345 2.49329 3.00555 3.14931 3.37614 3.41885 3.44022 3.81172 3.91713 4.41223 4.53864 4.95967 5.06402 5.11859 5.22357 5.24414 5.29007 5.39232 5.46736 5.55920 5.66589 5.88052 5.91863 6.02770 6.11664 6.18243 6.28964 6.38722 6.42291 6.46611 6.60436 6.76513 6.82669 6.93637 7.08195 7.38246 7.65418 8.16618 8.27257 8.77703 9.39166 9.90710 10.26686 11.30850 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.004798 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.043040 B = 5834.378656 C = 7106.478892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.008 4.008 3 Si 0.906 3.094 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.234 4.234 8 H 0.071 0.929 9 N -0.689 5.689 10 C 0.128 3.872 11 C 0.152 3.848 12 N -0.694 5.694 13 C 0.546 3.454 14 O -0.570 6.570 15 C -0.224 4.224 16 C 0.009 3.991 17 C 0.014 3.986 18 C -0.152 4.152 19 C -0.209 4.209 20 C 0.009 3.991 21 N -0.543 5.543 22 H 0.419 0.581 23 C -0.186 4.186 24 C -0.192 4.192 25 H 0.256 0.744 26 H 0.388 0.612 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.408 0.592 30 H 0.115 0.885 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.167 0.833 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 -6.194 -12.469 13.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.204 4.204 3 Si 0.736 3.264 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.365 4.365 8 H 0.089 0.911 9 N -0.329 5.329 10 C 0.034 3.966 11 C 0.026 3.974 12 N -0.344 5.344 13 C 0.336 3.664 14 O -0.453 6.453 15 C -0.247 4.247 16 C -0.012 4.012 17 C -0.096 4.096 18 C -0.177 4.177 19 C -0.234 4.234 20 C -0.126 4.126 21 N -0.137 5.137 22 H 0.257 0.743 23 C -0.224 4.224 24 C -0.232 4.232 25 H 0.066 0.934 26 H 0.223 0.777 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.245 0.755 30 H 0.133 0.867 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.184 0.816 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.113 -6.316 -12.413 13.928 hybrid contribution -0.663 1.350 0.637 1.633 sum -0.776 -4.966 -11.776 12.804 Atomic orbital electron populations 1.69641 1.05034 1.25967 1.57480 1.24714 0.95488 0.97630 1.02591 0.86288 0.78614 0.83379 0.78081 1.21157 1.21682 1.21124 1.19115 0.91099 0.83364 1.42881 0.91120 1.41792 1.05411 0.98545 1.87139 1.20234 0.98279 0.87406 0.90699 1.21036 0.95124 0.96614 0.84669 1.45712 1.21224 1.60642 1.06800 1.16872 0.86208 0.79709 0.83582 1.90776 1.20221 1.48875 1.85431 1.21859 1.01683 1.07198 0.93912 1.20777 0.98557 0.92048 0.89787 1.18350 0.87327 1.08270 0.95694 1.21477 1.00213 1.04489 0.91513 1.20845 0.94930 1.07995 0.99589 1.22031 1.01289 1.05415 0.83897 1.42256 1.14798 1.46680 1.09989 0.74309 1.23190 0.98004 0.96105 1.05086 1.23367 0.95932 1.04157 0.99790 0.93377 0.77708 0.91582 0.92450 0.75478 0.86714 0.83366 0.83958 0.84398 0.81616 0.89126 0.89386 0.89870 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.35 13.06 55.49 0.72 -25.63 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.23 -6.11 9.81 -15.06 -0.15 -6.26 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.69 -15.86 4.49 -47.23 -0.21 -16.07 16 10 C 0.13 2.43 2.46 -131.82 -0.32 2.10 16 11 C 0.15 2.84 5.69 -4.04 -0.02 2.81 16 12 N -0.69 -12.86 5.38 -63.26 -0.34 -13.20 16 13 C 0.55 10.11 7.56 -15.01 -0.11 10.00 16 14 O -0.57 -12.02 16.10 5.11 0.08 -11.94 16 15 C -0.22 -3.42 9.39 -39.27 -0.37 -3.78 16 16 C 0.01 0.13 9.40 -39.21 -0.37 -0.24 16 17 C 0.01 0.18 6.74 -83.90 -0.57 -0.39 16 18 C -0.15 -1.74 10.86 -38.99 -0.42 -2.16 16 19 C -0.21 -2.13 10.81 -39.98 -0.43 -2.56 16 20 C 0.01 0.08 11.90 -16.79 -0.20 -0.12 16 21 N -0.54 -5.84 5.94 -10.56 -0.06 -5.90 16 22 H 0.42 3.85 7.87 -40.82 -0.32 3.53 16 23 C -0.19 -2.98 10.11 -26.69 -0.27 -3.25 16 24 C -0.19 -3.31 10.18 -26.70 -0.27 -3.58 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.39 9.44 8.03 -40.82 -0.33 9.12 16 27 H 0.07 1.34 8.13 -51.93 -0.42 0.92 16 28 H 0.06 0.98 7.91 -51.93 -0.41 0.57 16 29 H 0.41 7.61 7.74 -40.82 -0.32 7.29 16 30 H 0.11 1.53 6.93 -52.49 -0.36 1.17 16 31 H 0.15 2.05 7.46 -52.49 -0.39 1.66 16 32 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.09 1.23 8.06 -51.93 -0.42 0.81 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 LS Contribution 333.12 15.07 5.02 5.02 Total: -1.00 -30.97 333.12 -8.47 -39.44 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -5.05 Total: 19.12 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -3.60 Total: -7.76 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 0.11 Total: -60.81 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.97 -8.47 -39.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754512847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.457 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds