Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99944 * 2 1 4 4 H 1.48509 * 109.47184 * 240.00290 * 3 2 1 5 5 H 1.48498 * 109.47356 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47274 * 120.00275 * 3 2 1 7 7 C 1.38814 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99415 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00249 * 359.97438 * 7 2 1 10 10 C 1.46490 * 119.99735 * 176.89657 * 9 7 2 11 11 C 1.53004 * 115.55297 * 294.99587 * 10 9 7 12 12 N 1.46492 * 109.47156 * 324.37077 * 11 10 9 13 13 C 1.34778 * 120.00260 * 174.41802 * 12 11 10 14 14 O 1.21785 * 119.99458 * 0.02562 * 13 12 11 15 15 C 1.41508 * 120.00201 * 179.97438 * 13 12 11 16 16 C 1.35618 * 120.00188 * 179.97438 * 15 13 12 17 17 C 1.41676 * 120.00520 * 179.97438 * 16 15 13 18 18 C 1.38279 * 126.26085 * 179.69172 * 17 16 15 19 19 C 1.39792 * 107.07608 * 179.88688 * 18 17 16 20 20 C 1.35497 * 107.91095 * 0.38322 * 19 18 17 21 21 N 1.35756 * 108.91285 * 359.76391 * 20 19 18 22 22 H 0.96997 * 125.69252 * 179.97438 * 21 20 19 23 23 C 1.53009 * 117.49892 * 149.33057 * 10 9 7 24 24 C 1.53000 * 117.50294 * 80.67431 * 10 9 7 25 25 H 0.96997 * 120.00046 * 359.97438 * 1 2 3 26 26 H 0.96996 * 119.99640 * 356.62151 * 9 7 2 27 27 H 1.09000 * 109.46538 * 84.37153 * 11 10 9 28 28 H 1.08999 * 109.47216 * 204.36692 * 11 10 9 29 29 H 0.97004 * 120.00407 * 354.41815 * 12 11 10 30 30 H 1.08001 * 120.00099 * 0.02562 * 15 13 12 31 31 H 1.08001 * 119.99713 * 0.02562 * 16 15 13 32 32 H 1.07998 * 126.46028 * 0.02612 * 18 17 16 33 33 H 1.07995 * 126.04057 * 180.10929 * 19 18 17 34 34 H 1.07997 * 125.54753 * 179.74275 * 20 19 18 35 35 H 1.08997 * 117.49653 * 0.02562 * 23 10 9 36 36 H 1.08999 * 117.49777 * 145.01936 * 23 10 9 37 37 H 1.08997 * 117.50087 * 214.98015 * 24 10 9 38 38 H 1.09007 * 117.49636 * 359.96755 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0564 -3.6558 -0.0698 11 6 2.8313 -3.9008 -1.3661 12 7 2.0825 -3.3439 -2.4954 13 6 2.6256 -3.3420 -3.7289 14 8 3.7388 -3.8038 -3.9047 15 6 1.9021 -2.8045 -4.8198 16 6 2.4488 -2.8022 -6.0609 17 6 1.7243 -2.2645 -7.1532 18 6 2.1567 -2.1909 -8.4645 19 6 1.1300 -1.5947 -9.2025 20 6 0.1146 -1.3122 -8.3509 21 7 0.4631 -1.7142 -7.1019 22 1 -0.0848 -1.6280 -6.3062 23 6 1.4315 -4.8702 0.6199 24 6 2.6626 -4.1937 1.2280 25 1 -0.4850 0.8400 0.0004 26 1 0.3569 -2.3888 0.0493 27 1 3.8065 -3.4180 -1.3032 28 1 2.9654 -4.9727 -1.5122 29 1 1.1958 -2.9764 -2.3554 30 1 0.9148 -2.3954 -4.6638 31 1 3.4363 -3.2109 -6.2167 32 1 3.1074 -2.5319 -8.8469 33 1 1.1453 -1.3910 -10.2629 34 1 -0.8197 -0.8431 -8.6216 35 1 0.4763 -4.7260 1.1248 36 1 1.5727 -5.8437 0.1504 37 1 3.6132 -4.7223 1.1582 38 1 2.5179 -3.6040 2.1333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754512847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = 43.799178 kcal Electronic energy + Delta-G solvation = -20341.208903 eV Core-core repulsion = 17185.094066 eV Total energy + Delta-G solvation = -3156.114837 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02120 -40.75925 -39.01010 -35.13071 -34.95724 -34.77396 -31.98415 -31.63528 -29.89510 -27.70777 -25.94523 -24.30516 -23.21433 -21.82488 -21.21315 -20.93115 -20.22642 -19.12860 -18.67614 -17.93845 -17.20239 -16.44969 -16.19273 -15.82391 -15.46899 -15.18605 -15.03651 -14.80887 -14.71411 -14.40888 -13.87862 -13.59038 -13.29053 -13.18891 -12.94915 -12.91083 -12.84883 -12.31202 -12.22212 -11.93205 -11.74786 -11.29625 -11.06915 -10.92131 -10.63771 -9.91085 -9.87098 -9.05757 -8.60163 -7.97344 -5.25805 -0.30660 1.44106 1.44738 1.50439 1.58720 2.05015 2.35384 2.42644 2.53846 2.61782 3.05808 3.38275 3.62812 3.89267 3.95854 4.01380 4.16583 4.36302 4.41024 4.44038 4.47208 4.53757 4.75421 4.83976 4.86311 4.96899 5.02779 5.12958 5.16277 5.36202 5.38169 5.38785 5.53516 5.64397 5.96151 6.08212 6.25185 6.59905 6.72190 7.32350 7.34310 8.02520 8.28617 9.24185 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.004798 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.043040 B = 5834.378656 C = 7106.478892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.058 4.058 3 Si 0.956 3.044 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.224 4.224 8 H 0.061 0.939 9 N -0.694 5.694 10 C 0.099 3.901 11 C 0.159 3.841 12 N -0.697 5.697 13 C 0.544 3.456 14 O -0.606 6.606 15 C -0.260 4.260 16 C 0.040 3.960 17 C -0.026 4.026 18 C -0.147 4.147 19 C -0.225 4.225 20 C 0.027 3.973 21 N -0.544 5.544 22 H 0.425 0.575 23 C -0.157 4.157 24 C -0.188 4.188 25 H 0.251 0.749 26 H 0.380 0.620 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.407 0.593 30 H 0.129 0.871 31 H 0.143 0.857 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.202 0.798 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 -6.550 -13.892 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.251 4.251 3 Si 0.786 3.214 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.355 4.355 8 H 0.079 0.921 9 N -0.333 5.333 10 C 0.007 3.993 11 C 0.032 3.968 12 N -0.346 5.346 13 C 0.336 3.664 14 O -0.492 6.492 15 C -0.282 4.282 16 C 0.019 3.981 17 C -0.136 4.136 18 C -0.173 4.173 19 C -0.249 4.249 20 C -0.109 4.109 21 N -0.138 5.138 22 H 0.264 0.736 23 C -0.194 4.194 24 C -0.228 4.228 25 H 0.060 0.940 26 H 0.213 0.787 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.244 0.756 30 H 0.147 0.853 31 H 0.161 0.839 32 H 0.172 0.828 33 H 0.179 0.821 34 H 0.219 0.781 35 H 0.109 0.891 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.565 -6.707 -13.811 15.364 hybrid contribution -0.507 1.426 0.893 1.757 sum -1.072 -5.281 -12.919 13.997 Atomic orbital electron populations 1.69747 1.05903 1.25967 1.59350 1.25257 0.96157 0.99955 1.03777 0.85481 0.77468 0.80647 0.77758 1.21450 1.21854 1.20898 1.19228 0.90759 0.84689 1.40845 0.92053 1.41758 1.05035 0.99261 1.87250 1.20440 1.00123 0.87232 0.91533 1.20963 0.93887 0.97361 0.84589 1.45733 1.21091 1.60794 1.06949 1.17323 0.85901 0.79038 0.84114 1.90739 1.21720 1.50806 1.85896 1.21681 1.02690 1.10428 0.93391 1.20816 0.97974 0.89532 0.89799 1.18316 0.88656 1.10928 0.95715 1.21870 1.00992 1.03112 0.91283 1.21236 0.94636 1.08072 1.00920 1.22748 1.02151 1.03040 0.83006 1.42371 1.14308 1.46282 1.10866 0.73643 1.23269 0.97375 0.95857 1.02910 1.23369 0.97779 1.03926 0.97723 0.93957 0.78666 0.94042 0.90622 0.75630 0.85347 0.83941 0.82758 0.82122 0.78089 0.89077 0.86406 0.87618 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.81 13.06 21.65 0.28 -54.52 16 2 C -0.06 -3.19 5.50 84.86 0.47 -2.73 16 3 Si 0.96 45.53 29.55 68.60 2.03 47.56 16 4 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 7 C -0.22 -11.81 9.81 84.03 0.82 -10.98 16 8 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 9 N -0.69 -32.16 4.49 -303.34 -1.36 -33.52 16 10 C 0.10 3.70 2.46 3.61 0.01 3.71 16 11 C 0.16 5.89 5.69 86.38 0.49 6.39 16 12 N -0.70 -26.22 5.38 -472.22 -2.54 -28.77 16 13 C 0.54 20.60 7.56 85.05 0.64 21.25 16 14 O -0.61 -26.20 16.10 -4.62 -0.07 -26.28 16 15 C -0.26 -8.04 9.39 22.47 0.21 -7.83 16 16 C 0.04 1.10 9.40 22.51 0.21 1.31 16 17 C -0.03 -0.63 6.74 39.08 0.26 -0.37 16 18 C -0.15 -3.09 10.86 22.66 0.25 -2.84 16 19 C -0.23 -3.90 10.81 22.01 0.24 -3.66 16 20 C 0.03 0.42 11.90 83.45 0.99 1.41 16 21 N -0.54 -10.68 5.94 -187.33 -1.11 -11.79 16 22 H 0.42 7.20 7.87 -92.71 -0.73 6.47 16 23 C -0.16 -4.67 10.11 30.62 0.31 -4.36 16 24 C -0.19 -6.20 10.18 30.62 0.31 -5.88 16 25 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 26 H 0.38 18.68 8.03 -92.71 -0.74 17.94 16 27 H 0.04 1.72 8.13 -2.39 -0.02 1.70 16 28 H 0.08 2.50 7.91 -2.39 -0.02 2.49 16 29 H 0.41 15.47 7.74 -92.71 -0.72 14.75 16 30 H 0.13 3.48 6.93 -2.91 -0.02 3.46 16 31 H 0.14 4.03 7.46 -2.91 -0.02 4.00 16 32 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.20 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.12 2.85 8.06 -2.39 -0.02 2.83 16 37 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 Total: -1.00 -66.80 333.12 1.34 -65.45 By element: Atomic # 1 Polarization: 47.55 SS G_CDS: -1.09 Total: 46.46 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 5.22 Total: -4.59 kcal Atomic # 7 Polarization: -123.87 SS G_CDS: -4.73 Total: -128.60 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.07 Total: -26.28 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -66.80 1.34 -65.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754512847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.251 kcal (2) G-P(sol) polarization free energy of solvation -66.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds