Wall clock time and date at job start Mon Mar 30 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99891 * 2 1 4 4 H 1.48501 * 109.47075 * 270.00177 * 3 2 1 5 5 H 1.48500 * 109.47215 * 30.00116 * 3 2 1 6 6 H 1.48498 * 109.47110 * 149.99860 * 3 2 1 7 7 C 1.38814 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99943 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99895 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99677 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46927 * 179.97438 * 10 9 7 12 12 C 1.53786 * 113.61574 * 175.00314 * 11 10 9 13 13 C 1.53779 * 87.08139 * 139.98113 * 12 11 10 14 14 N 1.46505 * 113.61212 * 89.12074 * 13 12 11 15 15 C 1.34777 * 119.99722 * 156.52957 * 14 13 12 16 16 O 1.21513 * 120.00316 * 359.97438 * 15 14 13 17 17 C 1.48154 * 119.99528 * 179.71956 * 15 14 13 18 18 C 1.39810 * 120.92451 * 359.97438 * 17 15 14 19 19 C 1.38148 * 119.00321 * 179.77417 * 18 17 15 20 20 N 1.31810 * 120.89361 * 0.51612 * 19 18 17 21 21 C 1.31817 * 122.05124 * 359.73219 * 20 19 18 22 22 C 1.38146 * 120.89247 * 0.02562 * 21 20 19 23 23 C 1.53777 * 87.17562 * 334.52842 * 13 12 11 24 24 H 0.97003 * 120.00268 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00333 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47042 * 60.00473 * 10 9 7 27 27 H 1.08999 * 109.47300 * 299.99802 * 10 9 7 28 28 H 1.09003 * 112.85327 * 43.80393 * 11 10 9 29 29 H 1.09003 * 113.61222 * 25.42933 * 12 11 10 30 30 H 1.09002 * 113.60987 * 254.53155 * 12 11 10 31 31 H 1.09000 * 113.61450 * 219.93119 * 13 12 11 32 32 H 0.97000 * 119.99795 * 336.52073 * 14 13 12 33 33 H 1.08005 * 120.50067 * 0.02562 * 18 17 15 34 34 H 1.07999 * 119.55398 * 180.22544 * 19 18 17 35 35 H 1.07996 * 119.55474 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.49989 * 180.02562 * 22 21 20 37 37 H 1.08991 * 113.61540 * 140.02715 * 23 13 12 38 38 H 1.09011 * 113.61107 * 270.92689 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1911 0.0000 12 6 6.4786 -3.4586 0.1227 13 6 7.4241 -2.8202 -0.9084 14 7 8.4709 -1.9888 -0.3089 15 6 9.6157 -1.7577 -0.9816 16 8 9.7798 -2.2392 -2.0852 17 6 10.6717 -0.9118 -0.3780 18 6 10.5008 -0.3434 0.8879 19 6 11.5132 0.4349 1.4149 20 7 12.6227 0.6519 0.7371 21 6 12.8221 0.1395 -0.4609 22 6 11.8642 -0.6547 -1.0611 23 6 6.2120 -2.0178 -1.4101 24 1 -0.4851 0.8401 -0.0004 25 1 3.8646 -0.3620 0.0004 26 1 3.8492 -3.0421 -0.8903 27 1 3.8485 -3.0425 0.8897 28 1 5.9001 -1.4010 0.6953 29 1 5.9835 -4.3601 -0.2382 30 1 6.9286 -3.5868 1.1072 31 1 7.8131 -3.5275 -1.6408 32 1 8.3400 -1.6047 0.5721 33 1 9.5926 -0.5136 1.4471 34 1 11.3921 0.8753 2.3935 35 1 13.7464 0.3439 -0.9806 36 1 12.0345 -1.0717 -2.0427 37 1 6.4470 -0.9839 -1.6624 38 1 5.6442 -2.5262 -2.1895 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755204734.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:02 Heat of formation + Delta-G solvation = 36.978191 kcal Electronic energy + Delta-G solvation = -20146.871484 eV Core-core repulsion = 16990.460867 eV Total energy + Delta-G solvation = -3156.410617 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02994 -39.89096 -38.36348 -34.82636 -33.75970 -32.63293 -31.63462 -31.11868 -27.42541 -25.69330 -25.25555 -23.90595 -23.08203 -21.44992 -21.29837 -19.40017 -18.56269 -17.58614 -16.90200 -16.15652 -15.88329 -15.69766 -15.37544 -14.85224 -14.42909 -14.35323 -14.22685 -14.07869 -13.75411 -13.44020 -12.71440 -12.53657 -12.39278 -12.15039 -11.87073 -11.48055 -10.92612 -10.77221 -10.51697 -10.33856 -10.33304 -10.23474 -9.98044 -9.87966 -9.65317 -9.60310 -9.24545 -8.90050 -7.23984 -5.78476 -3.13688 0.29519 0.64467 2.54404 2.71318 3.34427 3.37750 3.43157 3.44882 3.98385 4.13717 4.32168 4.49687 4.50810 4.56733 4.59267 4.62989 4.91446 4.92424 5.05745 5.30458 5.35319 5.50673 5.53229 5.59113 5.65365 5.73889 5.78077 5.88809 6.01553 6.03036 6.14606 6.17123 6.44377 6.64298 6.76705 7.14753 7.46050 7.82644 7.98200 8.40874 9.20188 9.92642 10.12598 11.40123 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021845 B = 0.003602 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.454957 B = 7770.815644 C = 8563.876146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.756 5.756 10 C 0.167 3.833 11 C -0.120 4.120 12 C -0.135 4.135 13 C 0.114 3.886 14 N -0.701 5.701 15 C 0.559 3.441 16 O -0.528 6.528 17 C -0.086 4.086 18 C -0.142 4.142 19 C 0.097 3.903 20 N -0.471 5.471 21 C 0.096 3.904 22 C -0.116 4.116 23 C -0.141 4.141 24 H 0.259 0.741 25 H 0.360 0.640 26 H 0.029 0.971 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.401 0.599 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.067 0.933 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.241 -3.102 1.798 25.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.401 5.401 10 C 0.040 3.960 11 C -0.139 4.139 12 C -0.173 4.173 13 C 0.009 3.991 14 N -0.351 5.351 15 C 0.345 3.655 16 O -0.404 6.404 17 C -0.097 4.097 18 C -0.163 4.163 19 C -0.059 4.059 20 N -0.180 5.180 21 C -0.061 4.061 22 C -0.137 4.137 23 C -0.179 4.179 24 H 0.069 0.931 25 H 0.193 0.807 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.237 0.763 33 H 0.158 0.842 34 H 0.181 0.819 35 H 0.181 0.819 36 H 0.167 0.833 37 H 0.086 0.914 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 25.736 -3.039 1.366 25.951 hybrid contribution -0.340 0.992 0.120 1.055 sum 25.395 -2.047 1.485 25.521 Atomic orbital electron populations 1.69701 1.05109 1.25822 1.57663 1.24680 0.95241 0.97213 1.02110 0.86530 0.79086 0.84995 0.77773 1.21086 1.21720 1.20496 1.19077 0.80724 0.94727 1.42884 0.89242 1.42698 1.03995 1.02273 1.91146 1.20614 0.87563 0.89263 0.98591 1.22886 0.96613 0.97298 0.97059 1.23297 0.96483 0.98680 0.98884 1.22013 0.86768 0.93437 0.96838 1.45599 1.16348 1.51993 1.21207 1.18169 0.81736 0.80446 0.85142 1.90787 1.79636 1.50657 1.19361 1.20416 0.95582 0.98468 0.95215 1.22402 1.00962 0.97703 0.95184 1.22803 0.88492 0.94918 0.99733 1.67580 1.22549 1.20058 1.07844 1.22850 0.98952 0.93129 0.91171 1.22352 0.92617 0.97305 1.01398 1.23508 0.95715 1.00943 0.97772 0.93053 0.80750 0.95278 0.95513 0.89578 0.88231 0.91049 0.87926 0.76281 0.84196 0.81933 0.81894 0.83342 0.91404 0.88590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.47 13.97 55.49 0.78 -28.69 16 2 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 22.11 27.74 -169.99 -4.71 17.39 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.48 6.52 56.52 0.37 -6.12 16 7 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.76 -17.73 5.41 -59.91 -0.32 -18.05 16 10 C 0.17 3.06 6.10 -4.04 -0.02 3.04 16 11 C -0.12 -1.64 3.65 -89.66 -0.33 -1.96 16 12 C -0.13 -1.41 7.38 -25.92 -0.19 -1.60 16 13 C 0.11 1.28 4.30 -67.12 -0.29 0.99 16 14 N -0.70 -7.04 5.22 -53.86 -0.28 -7.33 16 15 C 0.56 6.51 7.80 -12.19 -0.10 6.42 16 16 O -0.53 -7.92 16.07 5.35 0.09 -7.83 16 17 C -0.09 -0.82 5.91 -104.65 -0.62 -1.44 16 18 C -0.14 -1.08 9.62 -39.03 -0.38 -1.45 16 19 C 0.10 0.75 11.17 -17.59 -0.20 0.55 16 20 N -0.47 -4.35 10.33 -13.31 -0.14 -4.48 16 21 C 0.10 0.77 11.17 -17.59 -0.20 0.57 16 22 C -0.12 -1.03 9.68 -39.02 -0.38 -1.41 16 23 C -0.14 -1.86 7.45 -25.78 -0.19 -2.05 16 24 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 25 H 0.36 8.24 5.53 -40.82 -0.23 8.01 16 26 H 0.03 0.55 7.85 -51.93 -0.41 0.14 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.10 1.22 7.50 -51.93 -0.39 0.83 16 32 H 0.40 3.11 6.85 -40.82 -0.28 2.84 16 33 H 0.14 0.72 6.54 -52.48 -0.34 0.37 16 34 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.15 1.23 7.74 -52.49 -0.41 0.83 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.29 7.90 -51.92 -0.41 0.88 16 LS Contribution 322.72 15.07 4.86 4.86 Total: -1.00 -34.85 322.72 -7.88 -42.73 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.01 Total: 6.83 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -3.14 Total: -5.43 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: 0.03 Total: -58.55 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.85 -7.88 -42.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755204734.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.711 kcal (2) G-P(sol) polarization free energy of solvation -34.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds