Wall clock time and date at job start Mon Mar 30 2020 02:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99891 * 2 1 4 4 H 1.48501 * 109.47075 * 270.00177 * 3 2 1 5 5 H 1.48500 * 109.47215 * 30.00116 * 3 2 1 6 6 H 1.48498 * 109.47110 * 149.99860 * 3 2 1 7 7 C 1.38814 * 120.00248 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99943 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99895 * 180.02562 * 7 2 1 10 10 C 1.46498 * 119.99677 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.46927 * 179.97438 * 10 9 7 12 12 C 1.53786 * 113.61574 * 175.00314 * 11 10 9 13 13 C 1.53779 * 87.08139 * 139.98113 * 12 11 10 14 14 N 1.46505 * 113.61212 * 89.12074 * 13 12 11 15 15 C 1.34777 * 119.99722 * 156.52957 * 14 13 12 16 16 O 1.21513 * 120.00316 * 359.97438 * 15 14 13 17 17 C 1.48154 * 119.99528 * 179.71956 * 15 14 13 18 18 C 1.39810 * 120.92451 * 359.97438 * 17 15 14 19 19 C 1.38148 * 119.00321 * 179.77417 * 18 17 15 20 20 N 1.31810 * 120.89361 * 0.51612 * 19 18 17 21 21 C 1.31817 * 122.05124 * 359.73219 * 20 19 18 22 22 C 1.38146 * 120.89247 * 0.02562 * 21 20 19 23 23 C 1.53777 * 87.17562 * 334.52842 * 13 12 11 24 24 H 0.97003 * 120.00268 * 0.02562 * 1 2 3 25 25 H 0.96996 * 120.00333 * 359.97438 * 9 7 2 26 26 H 1.09004 * 109.47042 * 60.00473 * 10 9 7 27 27 H 1.08999 * 109.47300 * 299.99802 * 10 9 7 28 28 H 1.09003 * 112.85327 * 43.80393 * 11 10 9 29 29 H 1.09003 * 113.61222 * 25.42933 * 12 11 10 30 30 H 1.09002 * 113.60987 * 254.53155 * 12 11 10 31 31 H 1.09000 * 113.61450 * 219.93119 * 13 12 11 32 32 H 0.97000 * 119.99795 * 336.52073 * 14 13 12 33 33 H 1.08005 * 120.50067 * 0.02562 * 18 17 15 34 34 H 1.07999 * 119.55398 * 180.22544 * 19 18 17 35 35 H 1.07996 * 119.55474 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.49989 * 180.02562 * 22 21 20 37 37 H 1.08991 * 113.61540 * 140.02715 * 23 13 12 38 38 H 1.09011 * 113.61107 * 270.92689 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1911 0.0000 12 6 6.4786 -3.4586 0.1227 13 6 7.4241 -2.8202 -0.9084 14 7 8.4709 -1.9888 -0.3089 15 6 9.6157 -1.7577 -0.9816 16 8 9.7798 -2.2392 -2.0852 17 6 10.6717 -0.9118 -0.3780 18 6 10.5008 -0.3434 0.8879 19 6 11.5132 0.4349 1.4149 20 7 12.6227 0.6519 0.7371 21 6 12.8221 0.1395 -0.4609 22 6 11.8642 -0.6547 -1.0611 23 6 6.2120 -2.0178 -1.4101 24 1 -0.4851 0.8401 -0.0004 25 1 3.8646 -0.3620 0.0004 26 1 3.8492 -3.0421 -0.8903 27 1 3.8485 -3.0425 0.8897 28 1 5.9001 -1.4010 0.6953 29 1 5.9835 -4.3601 -0.2382 30 1 6.9286 -3.5868 1.1072 31 1 7.8131 -3.5275 -1.6408 32 1 8.3400 -1.6047 0.5721 33 1 9.5926 -0.5136 1.4471 34 1 11.3921 0.8753 2.3935 35 1 13.7464 0.3439 -0.9806 36 1 12.0345 -1.0717 -2.0427 37 1 6.4470 -0.9839 -1.6624 38 1 5.6442 -2.5262 -2.1895 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755204734.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:02 Heat of formation + Delta-G solvation = 11.961447 kcal Electronic energy + Delta-G solvation = -20147.956291 eV Core-core repulsion = 16990.460867 eV Total energy + Delta-G solvation = -3157.495425 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.79882 -40.70132 -39.34753 -36.51818 -34.83386 -33.63190 -32.98937 -32.17085 -28.93926 -26.65862 -26.16041 -24.79009 -24.35342 -22.97293 -22.11759 -20.55988 -19.50003 -19.30176 -17.66773 -16.84686 -16.72160 -16.59171 -16.43773 -16.24411 -15.94573 -15.55755 -15.09175 -14.88449 -14.74459 -14.56326 -14.44167 -13.90818 -13.51245 -13.38763 -13.02744 -12.76760 -12.69543 -12.18170 -11.89017 -11.76597 -11.44626 -11.41726 -11.20403 -11.02864 -10.91564 -10.55397 -10.21910 -10.15041 -9.28111 -8.03573 -5.36523 -0.38399 0.07623 1.35762 1.40592 1.47733 1.73423 1.90304 2.47683 2.82079 3.27773 3.41120 3.46306 3.48891 3.54749 3.79169 3.84596 3.90826 3.92720 4.04677 4.10444 4.50447 4.52021 4.67900 4.77241 4.79405 4.84365 4.85696 4.88492 4.97978 5.01307 5.10987 5.22957 5.29671 5.57953 5.61348 5.76085 6.21011 6.35948 6.88210 7.00644 7.08280 7.85565 8.04164 9.18281 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.021845 B = 0.003602 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.454957 B = 7770.815644 C = 8563.876146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.957 3.043 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.247 1.247 7 C -0.235 4.235 8 H 0.055 0.945 9 N -0.758 5.758 10 C 0.162 3.838 11 C -0.116 4.116 12 C -0.116 4.116 13 C 0.123 3.877 14 N -0.689 5.689 15 C 0.559 3.441 16 O -0.569 6.569 17 C -0.103 4.103 18 C -0.134 4.134 19 C 0.093 3.907 20 N -0.492 5.492 21 C 0.094 3.906 22 C -0.126 4.126 23 C -0.146 4.146 24 H 0.258 0.742 25 H 0.366 0.634 26 H 0.024 0.976 27 H 0.027 0.973 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.415 0.585 33 H 0.167 0.833 34 H 0.190 0.810 35 H 0.187 0.813 36 H 0.147 0.853 37 H 0.058 0.942 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.681 -2.378 3.137 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.258 4.258 3 Si 0.784 3.216 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.172 1.172 7 C -0.367 4.367 8 H 0.073 0.927 9 N -0.404 5.404 10 C 0.036 3.964 11 C -0.134 4.134 12 C -0.154 4.154 13 C 0.017 3.983 14 N -0.341 5.341 15 C 0.346 3.654 16 O -0.449 6.449 17 C -0.114 4.114 18 C -0.155 4.155 19 C -0.063 4.063 20 N -0.201 5.201 21 C -0.062 4.062 22 C -0.147 4.147 23 C -0.185 4.185 24 H 0.067 0.933 25 H 0.199 0.801 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.115 0.885 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.253 0.747 33 H 0.184 0.816 34 H 0.207 0.793 35 H 0.204 0.796 36 H 0.164 0.836 37 H 0.076 0.924 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 28.224 -2.340 2.737 28.453 hybrid contribution -1.130 0.668 -0.303 1.347 sum 27.095 -1.672 2.434 27.255 Atomic orbital electron populations 1.69891 1.07238 1.26724 1.59828 1.25552 0.96149 1.01422 1.02707 0.85373 0.78789 0.79421 0.77979 1.20804 1.22194 1.17172 1.19077 0.82996 0.93423 1.41163 0.92707 1.42727 1.02330 1.04415 1.90905 1.20821 0.90361 0.87138 0.98103 1.22836 0.93315 0.99619 0.97648 1.23225 0.94920 0.97291 0.99961 1.21840 0.86395 0.93000 0.97017 1.45499 1.15558 1.51455 1.21572 1.18497 0.82246 0.80022 0.84627 1.90766 1.80492 1.52423 1.21210 1.20389 0.95353 0.99255 0.96394 1.22651 1.01883 0.96662 0.94260 1.23304 0.87915 0.94514 1.00604 1.67636 1.23488 1.20636 1.08372 1.23197 0.99549 0.92483 0.90999 1.22454 0.92922 0.97758 1.01553 1.23526 0.96821 1.00675 0.97450 0.93340 0.80136 0.95841 0.95539 0.88509 0.87530 0.88568 0.88578 0.74658 0.81577 0.79271 0.79631 0.83569 0.92357 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.57 13.97 21.65 0.30 -63.27 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.96 45.17 27.74 68.60 1.90 47.07 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.25 -10.27 6.52 99.48 0.65 -9.62 16 7 C -0.24 -13.46 10.47 84.03 0.88 -12.58 16 8 H 0.05 3.44 8.06 -2.91 -0.02 3.42 16 9 N -0.76 -34.63 5.41 -343.46 -1.86 -36.48 16 10 C 0.16 5.71 6.10 86.38 0.53 6.24 16 11 C -0.12 -2.84 3.65 -10.17 -0.04 -2.88 16 12 C -0.12 -2.04 7.38 31.12 0.23 -1.81 16 13 C 0.12 2.47 4.30 45.51 0.20 2.66 16 14 N -0.69 -12.06 5.22 -442.61 -2.31 -14.37 16 15 C 0.56 12.20 7.80 86.88 0.68 12.88 16 16 O -0.57 -16.87 16.07 -3.76 -0.06 -16.93 16 17 C -0.10 -1.80 5.91 -19.88 -0.12 -1.92 16 18 C -0.13 -1.63 9.62 22.63 0.22 -1.42 16 19 C 0.09 1.16 11.17 84.67 0.95 2.10 16 20 N -0.49 -8.01 10.33 -196.01 -2.03 -10.04 16 21 C 0.09 1.35 11.17 84.67 0.95 2.30 16 22 C -0.13 -2.11 9.68 22.63 0.22 -1.89 16 23 C -0.15 -3.61 7.45 31.21 0.23 -3.38 16 24 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.37 15.80 5.53 -92.71 -0.51 15.29 16 26 H 0.02 0.87 7.85 -2.38 -0.02 0.85 16 27 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.11 1.79 8.10 -2.39 -0.02 1.77 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 2.14 7.50 -2.39 -0.02 2.12 16 32 H 0.42 4.87 6.85 -92.71 -0.63 4.24 16 33 H 0.17 1.00 6.54 -2.91 -0.02 0.99 16 34 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.15 2.42 7.74 -2.91 -0.02 2.39 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 2.31 7.90 -2.38 -0.02 2.29 16 Total: -1.00 -76.78 322.72 1.21 -75.57 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.12 Total: 21.65 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.38 Total: -3.19 kcal Atomic # 7 Polarization: -118.27 SS G_CDS: -5.89 Total: -124.16 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.06 Total: -16.93 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Total: -76.78 1.21 -75.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755204734.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.527 kcal (2) G-P(sol) polarization free energy of solvation -76.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds