Wall clock time and date at job start Mon Mar 30 2020 01:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39726 * 125.77376 * 2 1 4 4 C 1.36154 * 107.85633 * 179.75280 * 3 2 1 5 5 N 1.39366 * 126.26546 * 180.25002 * 4 3 2 6 6 C 1.34779 * 119.99988 * 0.13958 * 5 4 3 7 7 O 1.21635 * 119.99845 * 359.97438 * 6 5 4 8 8 C 1.43198 * 119.99776 * 180.02562 * 6 5 4 9 9 C 6.82379 * 139.88998 * 0.38441 * 2 1 3 10 10 C 8.29233 * 140.65069 * 0.39967 * 2 1 3 11 11 C 1.53007 * 109.46879 * 187.62437 * 10 9 8 12 12 C 1.53002 * 109.47329 * 307.62162 * 10 9 8 13 13 N 1.35820 * 107.47305 * 0.36607 * 4 3 2 14 14 C 1.46491 * 126.09466 * 179.90016 * 13 4 3 15 15 C 1.50702 * 109.46957 * 269.71080 * 14 13 4 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 N 1.30829 * 125.77780 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47036 * 269.99618 * 1 2 3 25 25 H 1.09002 * 109.47458 * 29.99430 * 1 2 3 26 26 H 1.09001 * 109.47016 * 150.00250 * 1 2 3 27 27 H 1.07997 * 126.07431 * 359.97438 * 3 2 1 28 28 H 0.96996 * 119.99731 * 180.13455 * 5 4 3 29 29 H 1.09000 * 109.47465 * 67.62828 * 10 9 8 30 30 H 1.08998 * 109.46997 * 299.99699 * 11 10 9 31 31 H 1.08994 * 109.46957 * 60.00343 * 11 10 9 32 32 H 1.09003 * 109.46801 * 180.02562 * 11 10 9 33 33 H 1.09003 * 109.46929 * 60.00533 * 12 10 9 34 34 H 1.09003 * 109.47180 * 179.97438 * 12 10 9 35 35 H 1.08999 * 109.46737 * 300.00339 * 12 10 9 36 36 H 1.09004 * 109.47166 * 149.71346 * 14 13 4 37 37 H 1.08994 * 109.47507 * 29.71052 * 14 13 4 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.1336 0.0000 4 6 3.6193 0.7148 0.0056 5 7 4.7494 1.5303 0.0124 6 6 4.6128 2.8712 0.0168 7 8 3.5031 3.3694 0.0143 8 6 5.7740 3.7091 0.0232 9 6 6.7259 4.3962 0.0295 10 6 7.9194 5.2576 0.0367 11 6 7.4954 6.7149 0.2306 12 6 8.8438 4.8388 1.1817 13 7 3.6088 -0.6434 0.0007 14 6 4.7858 -1.5155 0.0020 15 6 5.1904 -1.8153 -1.4184 16 1 4.6274 -1.3975 -2.2400 17 6 6.2832 -2.6178 -1.6693 18 7 6.9691 -3.1262 -0.6689 19 14 6.7893 -2.9830 -3.4298 20 1 7.7529 -1.9520 -3.8920 21 1 7.4286 -4.3219 -3.4935 22 1 5.5888 -2.9657 -4.3038 23 7 2.2719 -1.0614 0.0005 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 1.9874 2.1599 -0.0004 28 1 5.6342 1.1330 0.0141 29 1 8.4468 5.1558 -0.9118 30 1 6.8369 7.0133 -0.5852 31 1 6.9681 6.8167 1.1790 32 1 8.3792 7.3528 0.2354 33 1 9.1460 3.8006 1.0435 34 1 9.7279 5.4765 1.1867 35 1 8.3164 4.9407 2.1301 36 1 4.5475 -2.4467 0.5161 37 1 5.6072 -1.0166 0.5161 38 1 7.7377 -3.6911 -0.8453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823208708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:16 Heat of formation + Delta-G solvation = 79.052176 kcal Electronic energy + Delta-G solvation = -20164.104026 eV Core-core repulsion = 17009.517873 eV Total energy + Delta-G solvation = -3154.586152 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.85086 -39.13347 -36.61298 -34.77983 -33.78041 -32.23523 -31.94784 -29.17975 -28.31784 -27.50919 -26.04459 -24.58268 -22.86798 -22.04522 -20.08781 -19.75528 -17.89100 -16.87819 -16.49917 -16.28740 -15.37396 -15.25108 -14.84683 -14.53991 -14.10842 -13.99821 -13.78516 -12.92639 -12.78180 -12.57058 -12.51638 -12.30860 -12.08122 -11.80755 -11.76425 -11.71441 -11.58173 -11.10010 -10.90290 -10.62102 -10.50876 -10.34612 -10.33491 -10.14658 -9.81884 -9.59776 -8.72797 -7.93286 -7.48752 -6.34053 -4.42433 1.41750 2.13910 2.71441 2.84165 3.15631 3.22999 3.28886 3.40631 3.65012 3.73119 4.10816 4.24744 4.65868 4.77768 4.83189 4.99347 5.18847 5.29324 5.34365 5.47645 5.53442 5.61591 5.67971 5.88127 5.90514 6.03116 6.14034 6.15640 6.24691 6.37127 6.63366 6.82442 7.02557 7.12958 7.46757 7.54478 7.60319 7.78581 7.84959 8.21027 8.59570 8.69126 9.25139 10.73162 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.010595 B = 0.005593 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.082642 B = 5004.748970 C = 7125.623832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.290 4.290 4 C 0.299 3.701 5 N -0.626 5.626 6 C 0.641 3.359 7 O -0.500 6.500 8 C -0.217 4.217 9 C -0.067 4.067 10 C 0.008 3.992 11 C -0.147 4.147 12 C -0.147 4.147 13 N -0.344 5.344 14 C 0.256 3.744 15 C -0.541 4.541 16 H 0.065 0.935 17 C 0.067 3.933 18 N -0.890 5.890 19 Si 0.906 3.094 20 H -0.278 1.278 21 H -0.282 1.282 22 H -0.271 1.271 23 N -0.281 5.281 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.162 0.838 28 H 0.420 0.580 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.078 15.109 2.867 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.322 4.322 4 C 0.077 3.923 5 N -0.272 5.272 6 C 0.428 3.572 7 O -0.374 6.374 8 C -0.220 4.220 9 C -0.069 4.069 10 C -0.010 4.010 11 C -0.204 4.204 12 C -0.205 4.205 13 N -0.130 5.130 14 C 0.138 3.862 15 C -0.579 4.579 16 H 0.084 0.916 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.733 3.267 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.196 1.196 23 N -0.106 5.106 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.180 0.820 28 H 0.257 0.743 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.631 13.986 2.923 14.381 hybrid contribution 1.061 0.221 -0.977 1.459 sum 2.692 14.207 1.946 14.590 Atomic orbital electron populations 1.20030 0.87480 1.02513 1.02098 1.22016 0.96574 0.90909 1.01908 1.21285 0.88997 1.00547 1.21349 1.17940 0.87632 0.83360 1.03394 1.42471 1.08780 1.04903 1.71066 1.14372 0.85655 0.80130 0.77037 1.90789 1.24827 1.74032 1.47797 1.20244 0.95485 1.00271 1.06031 1.22575 0.94239 0.96393 0.93721 1.18539 0.88757 0.92346 1.01382 1.21859 1.02104 0.93533 1.02920 1.21859 0.98761 1.02439 0.97407 1.49517 1.06528 1.01913 1.55037 1.19643 0.77802 0.89729 0.98977 1.21350 1.13206 1.32028 0.91342 0.91648 1.24936 0.95670 0.94860 0.98211 1.69920 1.19063 1.32732 1.31056 0.86345 0.78845 0.77839 0.83649 1.20346 1.20756 1.19571 1.77343 0.86096 1.21797 1.25371 0.91318 0.91070 0.91451 0.82027 0.74291 0.87832 0.91893 0.91913 0.91234 0.91625 0.91149 0.91925 0.92413 0.93812 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.03 7.20 -82.46 -0.59 0.44 16 3 C -0.29 -6.07 9.58 -39.78 -0.38 -6.45 16 4 C 0.30 6.49 7.68 -152.75 -1.17 5.32 16 5 N -0.63 -11.77 5.40 -13.54 -0.07 -11.84 16 6 C 0.64 11.47 7.61 -14.33 -0.11 11.36 16 7 O -0.50 -9.98 14.21 5.25 0.07 -9.90 16 8 C -0.22 -3.28 13.61 -38.84 -0.53 -3.81 16 9 C -0.07 -0.83 12.56 -37.13 -0.47 -1.29 16 10 C 0.01 0.06 3.30 -93.41 -0.31 -0.24 16 11 C -0.15 -1.03 9.15 37.16 0.34 -0.69 16 12 C -0.15 -1.07 9.15 37.16 0.34 -0.73 16 13 N -0.34 -8.20 3.62 -61.45 -0.22 -8.42 16 14 C 0.26 6.47 6.02 -5.20 -0.03 6.44 16 15 C -0.54 -14.68 9.39 -34.44 -0.32 -15.00 16 16 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -24.43 13.29 55.43 0.74 -23.70 16 19 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 N -0.28 -6.60 12.56 33.64 0.42 -6.18 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.16 3.28 5.82 -52.49 -0.31 2.97 16 28 H 0.42 7.37 7.95 -40.82 -0.32 7.04 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.04 1.07 7.51 -51.93 -0.39 0.68 16 38 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 338.06 15.07 5.09 5.09 Total: -1.00 -31.41 338.06 -7.16 -38.57 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -5.22 Total: 4.12 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.96 Total: -3.52 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.86 Total: -50.15 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.90 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.41 -7.16 -38.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823208708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.620 kcal (2) G-P(sol) polarization free energy of solvation -31.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds