Wall clock time and date at job start Mon Mar 30 2020 02:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46498 * 120.00351 * 2 1 4 4 C 1.38477 * 119.99928 * 180.02562 * 2 1 3 5 5 C 1.39413 * 119.53035 * 11.75143 * 4 2 1 6 6 C 1.36847 * 119.38068 * 179.76380 * 5 4 2 7 7 C 1.40396 * 118.49032 * 0.50301 * 6 5 4 8 8 C 1.47440 * 120.48270 * 179.77069 * 7 6 5 9 9 O 1.21626 * 120.00020 * 328.53410 * 8 7 6 10 10 N 1.34779 * 119.99825 * 148.52280 * 8 7 6 11 11 C 1.36911 * 120.00089 * 7.16249 * 10 8 7 12 12 H 1.07993 * 120.00115 * 306.97989 * 11 10 8 13 13 C 1.39015 * 119.99754 * 126.97612 * 11 10 8 14 14 N 1.31391 * 119.99674 * 160.54392 * 13 11 10 15 15 Si 1.86795 * 120.00381 * 340.54605 * 13 11 10 16 16 H 1.48496 * 109.47231 * 272.82144 * 15 13 11 17 17 H 1.48502 * 109.46992 * 32.82570 * 15 13 11 18 18 H 1.48499 * 109.47160 * 152.82096 * 15 13 11 19 19 C 1.46503 * 119.99954 * 187.15811 * 10 8 7 20 20 C 1.52993 * 117.50063 * 181.33113 * 19 10 8 21 21 C 1.52992 * 117.49720 * 112.70792 * 19 10 8 22 22 C 1.39626 * 119.03750 * 359.50386 * 7 6 5 23 23 N 1.31670 * 120.50998 * 0.24640 * 22 7 6 24 24 H 1.08998 * 109.47499 * 186.73004 * 1 2 3 25 25 H 1.09004 * 109.47310 * 306.73603 * 1 2 3 26 26 H 1.09008 * 109.47157 * 66.72974 * 1 2 3 27 27 H 1.09004 * 109.47236 * 270.00268 * 3 2 1 28 28 H 1.09003 * 109.47333 * 30.00215 * 3 2 1 29 29 H 1.09004 * 109.47526 * 150.00224 * 3 2 1 30 30 H 1.08001 * 120.30752 * 0.02665 * 5 4 2 31 31 H 1.08004 * 120.75075 * 180.28156 * 6 5 4 32 32 H 0.97005 * 119.99908 * 180.02562 * 14 13 11 33 33 H 1.09000 * 115.54816 * 327.03923 * 19 10 8 34 34 H 1.09000 * 117.49834 * 0.02562 * 20 19 10 35 35 H 1.09001 * 117.50048 * 145.01895 * 20 19 10 36 36 H 1.09006 * 117.49916 * 214.97696 * 21 19 10 37 37 H 1.08998 * 117.50335 * 359.97438 * 21 19 10 38 38 H 1.08010 * 119.74585 * 180.26967 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1573 -1.1993 -0.0005 5 6 1.4724 -2.3880 -0.2481 6 6 2.1605 -3.5709 -0.2527 7 6 3.5404 -3.5440 0.0047 8 6 4.3237 -4.7930 0.0155 9 8 3.8039 -5.8338 0.3704 10 7 5.6157 -4.7815 -0.3680 11 6 6.2424 -3.5920 -0.6267 12 1 5.8037 -2.8901 -1.3203 13 6 7.4436 -3.2878 0.0036 14 7 8.2336 -2.3656 -0.4982 15 14 7.9345 -4.1902 1.5637 16 1 7.3576 -3.4931 2.7411 17 1 7.4214 -5.5828 1.5123 18 1 9.4149 -4.2121 1.6778 19 6 6.3495 -6.0417 -0.5081 20 6 7.8217 -5.9604 -0.9164 21 6 6.7766 -6.4576 -1.9171 22 6 4.1611 -2.3166 0.2449 23 7 3.4622 -1.2007 0.2350 24 1 -0.3634 -1.0205 0.1204 25 1 -0.3634 0.6147 0.8236 26 1 -0.3634 0.4060 -0.9441 27 1 2.3792 1.5834 -1.0277 28 1 1.6085 2.0284 0.5139 29 1 3.1500 1.1383 0.5138 30 1 0.4094 -2.3750 -0.4387 31 1 1.6528 -4.5043 -0.4465 32 1 9.0719 -2.1536 -0.0586 33 1 6.0620 -6.8326 0.1847 34 1 8.2444 -4.9692 -1.0805 35 1 8.5031 -6.6978 -0.4922 36 1 6.7705 -7.5222 -2.1513 37 1 6.5113 -5.7938 -2.7400 38 1 5.2229 -2.2821 0.4399 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:41 Heat of formation + Delta-G solvation = 70.008843 kcal Electronic energy + Delta-G solvation = -21541.178760 eV Core-core repulsion = 18386.200460 eV Total energy + Delta-G solvation = -3154.978301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.03726 -38.74126 -36.51745 -35.86463 -33.41895 -31.96640 -31.83805 -29.78496 -28.09441 -25.50293 -25.14327 -22.60516 -22.33099 -21.68659 -20.60312 -19.24600 -17.66151 -16.84788 -16.70456 -15.78022 -15.35549 -15.12971 -14.61408 -14.17789 -14.06853 -13.71383 -13.64713 -12.87907 -12.82312 -12.66927 -12.51583 -12.40809 -12.14888 -11.92201 -11.75385 -11.44015 -11.15874 -11.00781 -10.54869 -10.10371 -9.95605 -9.55176 -9.38094 -9.31841 -9.17369 -8.71857 -8.54376 -7.51001 -7.17043 -6.55195 -4.30118 1.67630 1.97459 3.14803 3.17319 3.24362 3.35606 3.75026 4.12884 4.26038 4.58268 4.61230 4.89441 5.04390 5.16243 5.32815 5.41263 5.51207 5.59048 5.71107 5.71462 5.75860 5.78045 5.81773 5.83845 5.98463 6.09702 6.32529 6.37984 6.46361 6.60295 6.78544 6.90245 7.05685 7.15844 7.26624 7.42667 7.70772 8.06164 8.19285 8.71038 8.87375 9.26373 9.63910 10.50357 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.006127 C = 0.005291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.024515 B = 4569.006372 C = 5290.370309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.621 5.621 3 C 0.099 3.901 4 C 0.402 3.598 5 C -0.262 4.262 6 C 0.005 3.995 7 C -0.220 4.220 8 C 0.548 3.452 9 O -0.592 6.592 10 N -0.440 5.440 11 C -0.361 4.361 12 H 0.102 0.898 13 C 0.082 3.918 14 N -0.850 5.850 15 Si 0.865 3.135 16 H -0.277 1.277 17 H -0.245 1.245 18 H -0.283 1.283 19 C 0.081 3.919 20 C -0.193 4.193 21 C -0.188 4.188 22 C 0.198 3.802 23 N -0.551 5.551 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.278 0.722 33 H 0.112 0.888 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.000 3.162 0.261 9.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.337 5.337 3 C -0.044 4.044 4 C 0.168 3.832 5 C -0.286 4.286 6 C -0.021 4.021 7 C -0.227 4.227 8 C 0.338 3.662 9 O -0.476 6.476 10 N -0.160 5.160 11 C -0.488 4.488 12 H 0.119 0.881 13 C -0.128 4.128 14 N -0.483 5.483 15 Si 0.689 3.311 16 H -0.203 1.203 17 H -0.168 1.168 18 H -0.208 1.208 19 C -0.023 4.023 20 C -0.231 4.231 21 C -0.227 4.227 22 C 0.041 3.959 23 N -0.268 5.268 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -8.731 3.721 0.587 9.509 hybrid contribution 0.013 -0.981 0.418 1.066 sum -8.718 2.740 1.005 9.194 Atomic orbital electron populations 1.21683 0.79133 1.03078 1.00910 1.45992 1.04771 1.03346 1.79548 1.21523 0.97962 0.83841 1.01042 1.18617 0.89437 0.85466 0.89676 1.20944 1.00788 0.92188 1.14692 1.21030 0.92669 0.97577 0.90813 1.20576 0.94233 0.95704 1.12168 1.18122 0.82640 0.87406 0.78008 1.90625 1.71940 1.33674 1.51379 1.42915 1.08683 1.04609 1.59770 1.18897 1.07156 0.95001 1.27761 0.88058 1.25527 0.95214 0.95026 0.97059 1.69787 1.10136 1.30737 1.37634 0.87081 0.77927 0.82621 0.83472 1.20266 1.16824 1.20813 1.21652 0.93861 0.89946 0.96873 1.23477 0.91869 1.04098 1.03617 1.23234 1.04680 1.00013 0.94769 1.24474 1.01115 0.84790 0.85542 1.67519 1.05506 1.32099 1.21653 0.90360 0.92521 0.93018 0.93799 0.92465 0.89773 0.85538 0.85079 0.91179 0.87025 0.85761 0.89844 0.89850 0.88770 0.78058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.95 10.49 59.84 0.63 1.58 16 2 N -0.62 -8.85 3.38 -189.69 -0.64 -9.49 16 3 C 0.10 1.27 10.59 59.85 0.63 1.90 16 4 C 0.40 7.13 7.32 -155.25 -1.14 5.99 16 5 C -0.26 -4.33 9.15 -39.65 -0.36 -4.69 16 6 C 0.01 0.10 9.68 -39.27 -0.38 -0.28 16 7 C -0.22 -4.80 5.63 -104.82 -0.59 -5.39 16 8 C 0.55 13.20 7.41 -12.51 -0.09 13.11 16 9 O -0.59 -15.18 16.58 5.25 0.09 -15.09 16 10 N -0.44 -10.53 2.17 -108.94 -0.24 -10.76 16 11 C -0.36 -8.96 5.66 -15.00 -0.08 -9.04 16 12 H 0.10 2.72 6.96 -52.49 -0.37 2.36 16 13 C 0.08 2.02 3.16 -17.45 -0.06 1.97 16 14 N -0.85 -22.02 13.96 55.50 0.77 -21.24 16 15 Si 0.86 19.77 25.52 -169.99 -4.34 15.43 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.24 -5.54 5.31 56.52 0.30 -5.24 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 C 0.08 1.79 3.99 -67.94 -0.27 1.52 16 20 C -0.19 -3.93 7.05 -26.74 -0.19 -4.11 16 21 C -0.19 -3.64 10.38 -26.74 -0.28 -3.92 16 22 C 0.20 4.35 9.14 -17.10 -0.16 4.20 16 23 N -0.55 -11.25 9.04 -12.11 -0.11 -11.36 16 24 H 0.08 0.74 5.55 -51.93 -0.29 0.45 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 29 H 0.08 1.24 7.22 -51.93 -0.37 0.86 16 30 H 0.13 1.65 5.99 -52.49 -0.31 1.34 16 31 H 0.13 2.28 8.00 -52.48 -0.42 1.86 16 32 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.11 2.47 7.76 -51.93 -0.40 2.06 16 34 H 0.12 2.83 5.13 -51.93 -0.27 2.56 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 38 H 0.20 4.81 4.91 -52.48 -0.26 4.56 16 LS Contribution 306.55 15.07 4.62 4.62 Total: -1.00 -28.95 306.55 -7.06 -36.01 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -4.88 Total: 9.07 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -2.33 Total: 2.83 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.21 Total: -52.86 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.09 Total: -15.09 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.34 Total: 15.43 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.95 -7.06 -36.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.015 kcal (2) G-P(sol) polarization free energy of solvation -28.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds