Wall clock time and date at job start Mon Mar 30 2020 01:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47036 * 2 1 4 4 N 1.46501 * 109.47130 * 180.02562 * 3 2 1 5 5 C 1.36686 * 119.99278 * 264.42301 * 4 3 2 6 6 H 1.08003 * 119.99700 * 132.42277 * 5 4 3 7 7 C 1.39172 * 120.00242 * 312.41899 * 5 4 3 8 8 N 1.31271 * 120.00115 * 3.05261 * 7 5 4 9 9 Si 1.86803 * 119.99960 * 183.05294 * 7 5 4 10 10 H 1.48503 * 109.47166 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46804 * 119.99906 * 9 7 5 12 12 H 1.48494 * 109.47231 * 240.00057 * 9 7 5 13 13 C 1.34772 * 120.00423 * 84.42614 * 4 3 2 14 14 O 1.21543 * 119.99857 * 4.92437 * 13 4 3 15 15 C 1.48230 * 120.00118 * 184.93175 * 13 4 3 16 16 C 1.39670 * 120.56270 * 174.27163 * 15 13 4 17 17 C 1.38672 * 118.26228 * 180.02562 * 16 15 13 18 18 N 1.32262 * 119.16017 * 359.72677 * 17 16 15 19 19 C 1.31896 * 121.05498 * 0.55184 * 18 17 16 20 20 C 1.50694 * 119.03404 * 179.71186 * 19 18 17 21 21 C 1.53007 * 117.49952 * 59.73118 * 20 19 18 22 22 C 1.53004 * 60.02870 * 252.47392 * 21 20 19 23 23 N 1.31572 * 121.92410 * 359.43176 * 19 18 17 24 24 H 1.08997 * 109.47180 * 300.00205 * 1 2 3 25 25 H 1.09001 * 109.47084 * 60.00527 * 1 2 3 26 26 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47186 * 240.00321 * 2 1 3 28 28 H 1.08999 * 109.47109 * 120.00018 * 2 1 3 29 29 H 1.09000 * 109.47112 * 59.99382 * 3 2 1 30 30 H 1.09001 * 109.46754 * 299.99675 * 3 2 1 31 31 H 0.97001 * 120.00279 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.87166 * 0.04372 * 16 15 13 33 33 H 1.08001 * 120.42232 * 179.97438 * 17 16 15 34 34 H 1.08999 * 115.54912 * 205.39588 * 20 19 18 35 35 H 1.08992 * 117.49899 * 359.97269 * 21 20 19 36 36 H 1.09001 * 117.49337 * 144.97280 * 21 20 19 37 37 H 1.09002 * 117.50087 * 107.50552 * 22 21 20 38 38 H 1.09004 * 117.49705 * 252.52134 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1888 1.5574 1.1773 6 1 5.0053 0.8850 1.3955 7 6 3.8329 2.5409 2.0955 8 7 2.8030 3.3193 1.8575 9 14 4.8208 2.7533 3.6666 10 1 5.9239 1.7595 3.6959 11 1 5.3893 4.1245 3.7123 12 1 3.9352 2.5452 4.8402 13 6 4.1785 1.3294 -1.1625 14 8 3.5737 1.3174 -2.2167 15 6 5.6566 1.2193 -1.1547 16 6 6.3574 0.9823 -2.3394 17 6 7.7395 0.8875 -2.2770 18 7 8.3431 1.0288 -1.1087 19 6 7.6510 1.2467 -0.0073 20 6 8.3850 1.3944 1.3005 21 6 9.4072 2.5273 1.4130 22 6 9.8823 1.0765 1.3114 23 7 6.3389 1.3444 -0.0179 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 2.5547 4.0045 2.4976 32 1 5.8366 0.8760 -3.2796 33 1 8.3160 0.7045 -3.1718 34 1 7.8109 1.1441 2.1927 35 1 9.5491 3.1655 0.5410 36 1 9.5052 3.0225 2.3791 37 1 10.3368 0.7603 0.3725 38 1 10.2927 0.6171 2.2107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069696298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:29 Heat of formation + Delta-G solvation = 50.400100 kcal Electronic energy + Delta-G solvation = -21566.379251 eV Core-core repulsion = 18410.550652 eV Total energy + Delta-G solvation = -3155.828600 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63194 -38.46377 -36.69088 -35.19066 -33.39611 -32.63669 -31.21792 -31.11346 -26.26754 -25.29787 -24.51131 -23.73791 -22.17277 -21.57414 -20.44098 -19.29330 -17.80112 -17.24248 -16.06167 -15.30546 -15.08053 -14.74685 -14.61120 -14.37389 -14.13521 -13.91134 -13.48414 -13.35573 -12.93236 -12.38695 -11.92375 -11.53347 -11.42754 -11.36317 -11.26821 -11.02374 -10.85195 -10.60964 -10.48944 -10.36348 -10.22158 -10.14450 -9.98198 -9.76527 -9.10328 -9.06528 -8.81609 -8.25173 -7.40495 -6.32688 -4.06963 1.18576 1.50544 3.13930 3.22554 3.27329 3.61190 4.06021 4.06951 4.18845 4.43195 4.56220 4.69635 5.02949 5.10602 5.24642 5.29477 5.45939 5.53606 5.68209 5.78472 5.79090 5.83156 5.90441 6.03735 6.06876 6.27236 6.33604 6.42379 6.50939 6.53995 6.66026 6.79923 6.84944 7.09429 7.39854 7.50797 7.65414 7.95958 8.48244 8.64892 9.06120 9.36458 9.81052 10.65985 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.007968 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.131263 B = 3513.330787 C = 4967.953451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C 0.106 3.894 4 N -0.401 5.401 5 C -0.298 4.298 6 H 0.115 0.885 7 C 0.041 3.959 8 N -0.871 5.871 9 Si 0.922 3.078 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.284 1.284 13 C 0.499 3.501 14 O -0.598 6.598 15 C 0.166 3.834 16 C -0.197 4.197 17 C 0.133 3.867 18 N -0.527 5.527 19 C 0.325 3.675 20 C -0.093 4.093 21 C -0.159 4.159 22 C -0.157 4.157 23 N -0.441 5.441 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.121 0.879 30 H 0.053 0.947 31 H 0.269 0.731 32 H 0.149 0.851 33 H 0.164 0.836 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.365 -3.738 -0.282 8.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.017 4.017 4 N -0.115 5.115 5 C -0.428 4.428 6 H 0.132 0.868 7 C -0.164 4.164 8 N -0.509 5.509 9 Si 0.749 3.251 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.210 1.210 13 C 0.287 3.713 14 O -0.485 6.485 15 C 0.018 3.982 16 C -0.221 4.221 17 C -0.032 4.032 18 N -0.242 5.242 19 C 0.058 3.942 20 C -0.113 4.113 21 C -0.197 4.197 22 C -0.195 4.195 23 N -0.157 5.157 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.138 0.862 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.167 0.833 33 H 0.181 0.819 34 H 0.147 0.853 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.353 -3.479 0.172 8.136 hybrid contribution -0.072 0.214 -0.085 0.242 sum 7.281 -3.264 0.086 7.980 Atomic orbital electron populations 1.21637 0.96318 1.00457 1.01531 1.21841 0.95006 0.99227 1.01206 1.21770 0.80824 0.94627 1.04485 1.43481 1.05226 1.57706 1.05117 1.20118 1.14383 1.14854 0.93397 0.86761 1.25602 0.96034 0.94740 0.99979 1.69659 1.25033 1.19599 1.36581 0.85931 0.79954 0.78630 0.80575 1.18622 1.20646 1.20999 1.18043 0.84562 0.84040 0.84698 1.90627 1.68181 1.58505 1.31167 1.21953 0.96181 0.91621 0.88411 1.22855 0.95984 1.02322 1.00893 1.22994 0.91726 0.92930 0.95598 1.67906 1.42159 1.14936 0.99230 1.22338 0.87566 0.91788 0.92464 1.20627 0.90905 1.05991 0.93814 1.22930 1.01873 0.91647 1.03232 1.22984 0.94737 0.98089 1.03698 1.69316 1.06899 1.11058 1.28385 0.92802 0.93111 0.93624 0.93118 0.92288 0.86192 0.92802 0.92003 0.83296 0.81907 0.85330 0.88741 0.88301 0.87438 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 37.16 0.37 -1.99 16 2 C -0.13 -2.74 6.22 -26.73 -0.17 -2.90 16 3 C 0.11 2.52 4.88 -4.04 -0.02 2.50 16 4 N -0.40 -10.26 2.51 -115.76 -0.29 -10.55 16 5 C -0.30 -7.59 7.53 -15.04 -0.11 -7.70 16 6 H 0.12 2.90 5.95 -52.48 -0.31 2.59 16 7 C 0.04 1.05 5.35 -17.44 -0.09 0.95 16 8 N -0.87 -22.86 10.96 55.51 0.61 -22.25 16 9 Si 0.92 19.79 29.56 -169.99 -5.02 14.77 16 10 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 13 C 0.50 12.65 7.59 -12.16 -0.09 12.56 16 14 O -0.60 -15.91 16.08 5.33 0.09 -15.82 16 15 C 0.17 3.75 6.68 -82.64 -0.55 3.20 16 16 C -0.20 -3.66 9.72 -38.89 -0.38 -4.04 16 17 C 0.13 2.11 11.31 -17.21 -0.19 1.92 16 18 N -0.53 -9.19 9.33 -10.75 -0.10 -9.29 16 19 C 0.33 6.25 7.31 -157.30 -1.15 5.10 16 20 C -0.09 -1.53 6.23 -91.73 -0.57 -2.10 16 21 C -0.16 -2.17 10.23 -26.73 -0.27 -2.45 16 22 C -0.16 -2.02 10.01 -26.69 -0.27 -2.29 16 23 N -0.44 -9.76 6.45 -7.34 -0.05 -9.81 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.12 3.02 5.49 -51.93 -0.28 2.74 16 30 H 0.05 1.34 7.53 -51.93 -0.39 0.95 16 31 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.15 2.56 7.75 -52.49 -0.41 2.16 16 33 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.13 2.16 8.14 -51.93 -0.42 1.74 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.11 1.41 7.54 -51.93 -0.39 1.01 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 323.08 15.07 4.87 4.87 Total: -1.00 -29.31 323.08 -8.55 -37.87 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.15 Total: 7.47 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -3.50 Total: 2.76 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: 0.17 Total: -51.90 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.09 Total: -15.82 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.31 -8.55 -37.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069696298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.265 kcal (2) G-P(sol) polarization free energy of solvation -29.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds