Wall clock time and date at job start Mon Mar 30 2020 01:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47036 * 2 1 4 4 N 1.46501 * 109.47130 * 180.02562 * 3 2 1 5 5 C 1.36686 * 119.99278 * 264.42301 * 4 3 2 6 6 H 1.08003 * 119.99700 * 132.42277 * 5 4 3 7 7 C 1.39172 * 120.00242 * 312.41899 * 5 4 3 8 8 N 1.31271 * 120.00115 * 3.05261 * 7 5 4 9 9 Si 1.86803 * 119.99960 * 183.05294 * 7 5 4 10 10 H 1.48503 * 109.47166 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46804 * 119.99906 * 9 7 5 12 12 H 1.48494 * 109.47231 * 240.00057 * 9 7 5 13 13 C 1.34772 * 120.00423 * 84.42614 * 4 3 2 14 14 O 1.21543 * 119.99857 * 4.92437 * 13 4 3 15 15 C 1.48230 * 120.00118 * 184.93175 * 13 4 3 16 16 C 1.39670 * 120.56270 * 174.27163 * 15 13 4 17 17 C 1.38672 * 118.26228 * 180.02562 * 16 15 13 18 18 N 1.32262 * 119.16017 * 359.72677 * 17 16 15 19 19 C 1.31896 * 121.05498 * 0.55184 * 18 17 16 20 20 C 1.50694 * 119.03404 * 179.71186 * 19 18 17 21 21 C 1.53007 * 117.49952 * 59.73118 * 20 19 18 22 22 C 1.53004 * 60.02870 * 252.47392 * 21 20 19 23 23 N 1.31572 * 121.92410 * 359.43176 * 19 18 17 24 24 H 1.08997 * 109.47180 * 300.00205 * 1 2 3 25 25 H 1.09001 * 109.47084 * 60.00527 * 1 2 3 26 26 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47186 * 240.00321 * 2 1 3 28 28 H 1.08999 * 109.47109 * 120.00018 * 2 1 3 29 29 H 1.09000 * 109.47112 * 59.99382 * 3 2 1 30 30 H 1.09001 * 109.46754 * 299.99675 * 3 2 1 31 31 H 0.97001 * 120.00279 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.87166 * 0.04372 * 16 15 13 33 33 H 1.08001 * 120.42232 * 179.97438 * 17 16 15 34 34 H 1.08999 * 115.54912 * 205.39588 * 20 19 18 35 35 H 1.08992 * 117.49899 * 359.97269 * 21 20 19 36 36 H 1.09001 * 117.49337 * 144.97280 * 21 20 19 37 37 H 1.09002 * 117.50087 * 107.50552 * 22 21 20 38 38 H 1.09004 * 117.49705 * 252.52134 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1888 1.5574 1.1773 6 1 5.0053 0.8850 1.3955 7 6 3.8329 2.5409 2.0955 8 7 2.8030 3.3193 1.8575 9 14 4.8208 2.7533 3.6666 10 1 5.9239 1.7595 3.6959 11 1 5.3893 4.1245 3.7123 12 1 3.9352 2.5452 4.8402 13 6 4.1785 1.3294 -1.1625 14 8 3.5737 1.3174 -2.2167 15 6 5.6566 1.2193 -1.1547 16 6 6.3574 0.9823 -2.3394 17 6 7.7395 0.8875 -2.2770 18 7 8.3431 1.0288 -1.1087 19 6 7.6510 1.2467 -0.0073 20 6 8.3850 1.3944 1.3005 21 6 9.4072 2.5273 1.4130 22 6 9.8823 1.0765 1.3114 23 7 6.3389 1.3444 -0.0179 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 2.5547 4.0045 2.4976 32 1 5.8366 0.8760 -3.2796 33 1 8.3160 0.7045 -3.1718 34 1 7.8109 1.1441 2.1927 35 1 9.5491 3.1655 0.5410 36 1 9.5052 3.0225 2.3791 37 1 10.3368 0.7603 0.3725 38 1 10.2927 0.6171 2.2107 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069696298.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:28 Heat of formation + Delta-G solvation = 34.733144 kcal Electronic energy + Delta-G solvation = -21567.058621 eV Core-core repulsion = 18410.550652 eV Total energy + Delta-G solvation = -3156.507970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.14549 -40.30708 -37.88948 -37.10318 -34.97197 -34.33094 -33.04046 -32.59750 -27.95750 -27.12697 -25.90127 -25.37062 -23.20384 -23.06737 -22.02727 -21.11561 -19.50981 -18.74763 -17.73338 -16.91653 -16.55558 -16.47924 -16.23312 -16.05420 -15.60775 -15.43315 -15.10944 -14.80063 -14.58113 -14.08507 -13.35627 -13.27515 -13.05452 -12.98269 -12.67786 -12.51186 -12.35831 -12.07159 -11.97615 -11.82148 -11.72778 -11.57512 -11.54215 -11.36543 -11.00728 -10.91367 -10.21411 -9.94648 -9.31427 -8.23353 -6.05379 -0.38800 0.09717 1.42652 1.45476 1.59802 1.95362 2.30005 2.60816 2.74478 2.89407 3.10928 3.11947 3.37817 3.84715 3.94965 3.98897 4.12045 4.17343 4.19398 4.25818 4.31077 4.52121 4.62165 4.72919 4.79873 4.89635 4.95209 4.98666 5.07405 5.17747 5.23008 5.33888 5.34958 5.42224 5.52321 5.71345 5.99198 6.07738 6.54164 7.05914 7.19659 7.44309 7.87305 8.76017 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015296 B = 0.007968 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.131263 B = 3513.330787 C = 4967.953451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 C 0.107 3.893 4 N -0.416 5.416 5 C -0.306 4.306 6 H 0.113 0.887 7 C -0.001 4.001 8 N -0.904 5.904 9 Si 0.980 3.020 10 H -0.247 1.247 11 H -0.284 1.284 12 H -0.278 1.278 13 C 0.486 3.514 14 O -0.623 6.623 15 C 0.133 3.867 16 C -0.197 4.197 17 C 0.155 3.845 18 N -0.518 5.518 19 C 0.318 3.682 20 C -0.129 4.129 21 C -0.151 4.151 22 C -0.127 4.127 23 N -0.472 5.472 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.033 0.967 31 H 0.270 0.730 32 H 0.160 0.840 33 H 0.219 0.781 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.108 0.892 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.864 -4.553 -0.037 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C -0.016 4.016 4 N -0.130 5.130 5 C -0.436 4.436 6 H 0.130 0.870 7 C -0.202 4.202 8 N -0.543 5.543 9 Si 0.804 3.196 10 H -0.170 1.170 11 H -0.210 1.210 12 H -0.204 1.204 13 C 0.275 3.725 14 O -0.511 6.511 15 C -0.013 4.013 16 C -0.220 4.220 17 C -0.012 4.012 18 N -0.233 5.233 19 C 0.051 3.949 20 C -0.149 4.149 21 C -0.189 4.189 22 C -0.165 4.165 23 N -0.188 5.188 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.124 0.876 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.177 0.823 33 H 0.236 0.764 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.846 -4.306 0.437 10.755 hybrid contribution -0.736 0.446 -0.296 0.910 sum 9.110 -3.860 0.141 9.895 Atomic orbital electron populations 1.21591 0.93221 1.02428 1.01898 1.21733 0.97651 0.96500 1.00346 1.21733 0.80686 0.96554 1.02596 1.43716 1.05784 1.58071 1.05477 1.20201 1.14487 1.15360 0.93525 0.86988 1.26365 0.96767 0.94275 1.02807 1.69777 1.26410 1.20379 1.37777 0.85058 0.79058 0.78490 0.77028 1.17049 1.20977 1.20413 1.18602 0.86272 0.83308 0.84300 1.90572 1.69325 1.59425 1.31780 1.21733 0.94886 0.94344 0.90372 1.23057 0.97260 1.01820 0.99841 1.23851 0.90793 0.89779 0.96738 1.68066 1.41610 1.14247 0.99342 1.22852 0.86775 0.91098 0.94174 1.20736 0.92555 1.09466 0.92188 1.23040 0.99922 0.91961 1.04011 1.23088 0.91294 0.97135 1.04970 1.69138 1.08577 1.12358 1.28733 0.92365 0.92838 0.90799 0.94276 0.92635 0.87570 0.94885 0.91996 0.82257 0.76435 0.86344 0.89339 0.86423 0.87377 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.91 71.98 0.71 -3.69 16 2 C -0.12 -5.18 6.22 30.59 0.19 -4.99 16 3 C 0.11 5.36 4.88 86.38 0.42 5.79 16 4 N -0.42 -22.23 2.51 -638.44 -1.60 -23.83 16 5 C -0.31 -16.13 7.53 84.16 0.63 -15.50 16 6 H 0.11 5.86 5.95 -2.91 -0.02 5.84 16 7 C 0.00 -0.05 5.35 85.00 0.45 0.40 16 8 N -0.90 -49.12 10.96 21.70 0.24 -48.89 16 9 Si 0.98 40.91 29.56 68.60 2.03 42.94 16 10 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 11 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 13 C 0.49 25.65 7.59 86.90 0.66 26.31 16 14 O -0.62 -34.40 16.08 -3.85 -0.06 -34.47 16 15 C 0.13 6.10 6.68 41.94 0.28 6.38 16 16 C -0.20 -7.07 9.72 22.72 0.22 -6.85 16 17 C 0.16 4.42 11.31 84.73 0.96 5.38 16 18 N -0.52 -16.67 9.33 -187.92 -1.75 -18.43 16 19 C 0.32 11.83 7.31 138.78 1.01 12.84 16 20 C -0.13 -4.00 6.23 -11.52 -0.07 -4.08 16 21 C -0.15 -3.73 10.23 30.60 0.31 -3.42 16 22 C -0.13 -2.83 10.01 30.62 0.31 -2.52 16 23 N -0.47 -21.06 6.45 -177.12 -1.14 -22.21 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 28 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.11 5.62 5.49 -2.39 -0.01 5.61 16 30 H 0.03 1.73 7.53 -2.39 -0.02 1.72 16 31 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 32 H 0.16 5.32 7.75 -2.91 -0.02 5.29 16 33 H 0.22 3.77 8.06 -2.91 -0.02 3.74 16 34 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 35 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.11 2.42 7.54 -2.39 -0.02 2.40 16 38 H 0.12 2.07 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -66.56 323.08 4.86 -61.70 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 1.06 Total: 27.12 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 6.09 Total: 16.06 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -4.26 Total: -113.35 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.06 Total: -34.47 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -66.56 4.86 -61.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069696298.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.429 kcal (2) G-P(sol) polarization free energy of solvation -66.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds