Wall clock time and date at job start Mon Mar 30 2020 01:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 119.99848 * 2 1 4 4 N 1.46494 * 109.47306 * 125.00383 * 3 2 1 5 5 C 1.30343 * 120.00126 * 116.82553 * 4 3 2 6 6 N 1.37479 * 120.00044 * 6.26293 * 5 4 3 7 7 N 1.37481 * 119.99758 * 186.26900 * 5 4 3 8 8 C 1.46506 * 120.00020 * 179.97438 * 7 5 4 9 9 C 1.50689 * 109.47355 * 179.97438 * 8 7 5 10 10 C 1.38308 * 119.93339 * 269.72661 * 9 8 7 11 11 C 1.38100 * 120.06969 * 179.72555 * 10 9 8 12 12 C 1.38882 * 119.92804 * 0.56585 * 11 10 9 13 13 O 1.35751 * 120.07028 * 179.67856 * 12 11 10 14 14 C 1.34828 * 117.00417 * 174.21328 * 13 12 11 15 15 H 1.07995 * 119.99675 * 5.07674 * 14 13 12 16 16 C 1.38659 * 120.00113 * 185.08522 * 14 13 12 17 17 N 1.31552 * 119.99844 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99923 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47107 * 59.99803 * 18 16 14 20 20 H 1.48498 * 109.47017 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47062 * 299.99644 * 18 16 14 22 22 C 1.38877 * 119.86352 * 359.71201 * 12 11 10 23 23 C 1.38097 * 119.93234 * 359.97438 * 22 12 11 24 24 H 1.07997 * 120.00142 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.99491 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.00576 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46854 * 245.00565 * 3 2 1 28 28 H 1.09003 * 109.46669 * 4.99924 * 3 2 1 29 29 H 0.97001 * 119.99730 * 5.90165 * 6 5 4 30 30 H 0.96997 * 119.99937 * 185.89735 * 6 5 4 31 31 H 0.96994 * 120.00131 * 359.97438 * 7 5 4 32 32 H 1.09001 * 109.46930 * 299.99766 * 8 7 5 33 33 H 1.09008 * 109.46821 * 59.99205 * 8 7 5 34 34 H 1.07995 * 119.95911 * 359.97438 * 10 9 8 35 35 H 1.07989 * 120.03833 * 180.27438 * 11 10 9 36 36 H 0.96999 * 120.00052 * 180.02562 * 17 16 14 37 37 H 1.08002 * 120.03496 * 179.97438 * 22 12 11 38 38 H 1.08001 * 119.96654 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1313 5 6 4.2780 1.3960 0.9177 6 7 4.7545 1.5681 -0.3603 7 7 5.1560 1.2914 1.9705 8 6 6.5994 1.3628 1.7304 9 6 7.3338 1.2231 3.0387 10 6 7.6407 2.3487 3.7815 11 6 8.3087 2.2234 4.9838 12 6 8.6827 0.9665 5.4410 13 8 9.3452 0.8406 6.6191 14 6 9.5725 -0.4121 7.0629 15 1 9.3054 -1.2592 6.4486 16 6 10.1490 -0.6127 8.3078 17 7 10.4747 0.4193 9.0559 18 14 10.4633 -2.3483 8.9228 19 1 11.3797 -3.0470 7.9862 20 1 11.0833 -2.2911 10.2709 21 1 9.1771 -3.0866 9.0000 22 6 8.3782 -0.1613 4.6900 23 6 7.7043 -0.0301 3.4918 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 2.6212 1.4027 -0.9314 28 1 1.3584 2.1317 0.0896 29 1 4.1367 1.7274 -1.0909 30 1 5.7085 1.5301 -0.5314 31 1 4.8197 1.1703 2.8722 32 1 6.8963 0.5571 1.0588 33 1 6.8452 2.3230 1.2767 34 1 7.3541 3.3262 3.4229 35 1 8.5441 3.1023 5.5655 36 1 10.8784 0.2790 9.9266 37 1 8.6681 -1.1401 5.0427 38 1 7.4669 -0.9068 2.9075 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076105925.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:32 Heat of formation + Delta-G solvation = 53.209827 kcal Electronic energy + Delta-G solvation = -19605.770814 eV Core-core repulsion = 16450.064053 eV Total energy + Delta-G solvation = -3155.706761 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.33314 -38.59051 -36.86449 -35.14220 -33.32938 -32.32150 -31.24154 -30.29858 -29.68328 -26.43035 -25.43849 -24.08263 -22.07947 -20.72289 -20.56816 -19.62949 -18.10189 -17.88313 -17.10243 -16.74721 -15.53912 -15.04617 -14.90862 -14.60053 -14.32262 -14.13874 -13.90198 -13.73966 -13.56486 -13.28400 -12.80530 -12.57200 -12.06765 -11.92867 -11.67349 -11.35945 -11.23579 -10.91323 -10.83415 -10.72821 -10.50805 -9.87343 -9.44332 -9.12960 -8.92368 -8.87627 -8.30203 -7.71454 -7.35520 -6.53634 -4.12621 2.01272 2.11933 2.21465 3.00325 3.08276 3.09468 3.12915 3.26580 3.89912 3.96053 4.51035 4.97365 4.99824 5.05945 5.14441 5.17387 5.27529 5.28032 5.50150 5.61651 5.67108 5.71566 5.75767 5.94405 6.10618 6.31601 6.53376 6.54088 6.60529 6.73267 6.78711 6.83361 6.94247 7.11916 7.24210 7.33838 7.50220 7.69519 7.90830 7.98637 8.67866 8.91493 9.59240 10.63728 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027424 B = 0.002876 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.771803 B = 9733.727324 C =10304.497793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C 0.106 3.894 4 N -0.676 5.676 5 C 0.629 3.371 6 N -0.898 5.898 7 N -0.716 5.716 8 C 0.183 3.817 9 C -0.214 4.214 10 C -0.052 4.052 11 C -0.196 4.196 12 C 0.161 3.839 13 O -0.172 6.172 14 C -0.394 4.394 15 H 0.093 0.907 16 C 0.041 3.959 17 N -0.859 5.859 18 Si 0.942 3.058 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.237 4.237 23 C -0.048 4.048 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.033 0.967 28 H 0.066 0.934 29 H 0.405 0.595 30 H 0.392 0.608 31 H 0.418 0.582 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.272 0.728 37 H 0.128 0.872 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.328 0.477 -17.154 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.154 4.154 3 C -0.025 4.025 4 N -0.422 5.422 5 C 0.264 3.736 6 N -0.457 5.457 7 N -0.360 5.360 8 C 0.059 3.941 9 C -0.216 4.216 10 C -0.071 4.071 11 C -0.215 4.215 12 C 0.106 3.894 13 O -0.075 6.075 14 C -0.470 4.470 15 H 0.111 0.889 16 C -0.164 4.164 17 N -0.493 5.493 18 Si 0.767 3.233 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.194 1.194 22 C -0.257 4.257 23 C -0.067 4.067 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.119 0.881 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.238 0.762 30 H 0.220 0.780 31 H 0.257 0.743 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.146 0.854 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.574 0.667 -16.113 18.754 hybrid contribution 0.537 -0.900 -0.513 1.167 sum -9.037 -0.233 -16.626 18.925 Atomic orbital electron populations 1.23729 0.95845 1.01474 1.02635 1.23011 0.95835 0.98472 0.98066 1.20607 0.95088 0.94881 0.91932 1.72746 0.97742 1.42776 1.28896 1.19123 0.87934 0.86773 0.79784 1.43188 1.11188 1.83477 1.07845 1.44422 1.03794 1.80091 1.07725 1.19967 0.78490 1.00143 0.95454 1.19043 1.09932 0.93866 0.98744 1.20510 0.96176 0.97096 0.93284 1.20214 1.07028 0.95627 0.98628 1.19445 0.89525 0.93392 0.86993 1.83976 1.62195 1.30977 1.30313 1.21314 1.42355 0.81443 1.01903 0.88948 1.25322 0.96278 0.99894 0.94940 1.70023 1.38157 1.30194 1.10926 0.85761 0.79094 0.80138 0.78357 1.19435 1.20197 1.19374 1.21151 1.07897 0.99278 0.97342 1.20618 0.95442 0.95751 0.94881 0.88763 0.88819 0.88095 0.94952 0.91587 0.76205 0.77956 0.74349 0.92441 0.92338 0.86981 0.86362 0.91795 0.85423 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.95 14.32 29.02 0.42 -1.54 16 2 C -0.13 -1.50 9.85 -36.02 -0.35 -1.86 16 3 C 0.11 1.21 6.75 -5.19 -0.04 1.18 16 4 N -0.68 -9.46 10.60 -62.96 -0.67 -10.13 16 5 C 0.63 7.71 8.63 -320.10 -2.76 4.95 16 6 N -0.90 -7.77 8.74 30.14 0.26 -7.50 16 7 N -0.72 -8.92 5.66 -62.97 -0.36 -9.27 16 8 C 0.18 2.11 5.18 -5.20 -0.03 2.08 16 9 C -0.21 -3.24 5.25 -104.58 -0.55 -3.78 16 10 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 11 C -0.20 -3.90 9.99 -39.39 -0.39 -4.29 16 12 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 13 O -0.17 -4.76 9.76 0.05 0.00 -4.76 16 14 C -0.39 -10.69 9.49 30.89 0.29 -10.40 16 15 H 0.09 2.30 5.21 -52.49 -0.27 2.03 16 16 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 17 N -0.86 -24.64 13.67 55.48 0.76 -23.88 16 18 Si 0.94 20.00 29.55 -169.99 -5.02 14.98 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 22 C -0.24 -4.85 9.17 -39.40 -0.36 -5.22 16 23 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 24 H 0.09 0.85 7.84 -52.49 -0.41 0.44 16 25 H 0.09 0.80 8.06 -52.48 -0.42 0.38 16 26 H 0.10 1.15 8.06 -52.49 -0.42 0.73 16 27 H 0.03 0.30 5.40 -51.93 -0.28 0.02 16 28 H 0.07 0.75 7.79 -51.93 -0.40 0.34 16 29 H 0.40 2.95 6.25 -40.82 -0.26 2.70 16 30 H 0.39 2.76 7.38 -40.82 -0.30 2.46 16 31 H 0.42 5.79 8.58 -40.82 -0.35 5.44 16 32 H 0.06 0.59 7.87 -51.93 -0.41 0.18 16 33 H 0.06 0.60 8.01 -51.92 -0.42 0.18 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -30.28 328.03 -9.63 -39.91 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -4.65 Total: 12.55 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -4.90 Total: -16.84 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.00 Total: -50.78 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: 0.00 Total: -4.76 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.28 -9.63 -39.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076105925.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.116 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds