Wall clock time and date at job start Mon Mar 30 2020 01:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50707 * 119.99848 * 2 1 4 4 N 1.46494 * 109.47306 * 125.00383 * 3 2 1 5 5 C 1.30343 * 120.00126 * 116.82553 * 4 3 2 6 6 N 1.37479 * 120.00044 * 6.26293 * 5 4 3 7 7 N 1.37481 * 119.99758 * 186.26900 * 5 4 3 8 8 C 1.46506 * 120.00020 * 179.97438 * 7 5 4 9 9 C 1.50689 * 109.47355 * 179.97438 * 8 7 5 10 10 C 1.38308 * 119.93339 * 269.72661 * 9 8 7 11 11 C 1.38100 * 120.06969 * 179.72555 * 10 9 8 12 12 C 1.38882 * 119.92804 * 0.56585 * 11 10 9 13 13 O 1.35751 * 120.07028 * 179.67856 * 12 11 10 14 14 C 1.34828 * 117.00417 * 174.21328 * 13 12 11 15 15 H 1.07995 * 119.99675 * 5.07674 * 14 13 12 16 16 C 1.38659 * 120.00113 * 185.08522 * 14 13 12 17 17 N 1.31552 * 119.99844 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99923 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47107 * 59.99803 * 18 16 14 20 20 H 1.48498 * 109.47017 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47062 * 299.99644 * 18 16 14 22 22 C 1.38877 * 119.86352 * 359.71201 * 12 11 10 23 23 C 1.38097 * 119.93234 * 359.97438 * 22 12 11 24 24 H 1.07997 * 120.00142 * 359.97438 * 1 2 3 25 25 H 1.08003 * 119.99491 * 180.02562 * 1 2 3 26 26 H 1.07996 * 120.00576 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.46854 * 245.00565 * 3 2 1 28 28 H 1.09003 * 109.46669 * 4.99924 * 3 2 1 29 29 H 0.97001 * 119.99730 * 5.90165 * 6 5 4 30 30 H 0.96997 * 119.99937 * 185.89735 * 6 5 4 31 31 H 0.96994 * 120.00131 * 359.97438 * 7 5 4 32 32 H 1.09001 * 109.46930 * 299.99766 * 8 7 5 33 33 H 1.09008 * 109.46821 * 59.99205 * 8 7 5 34 34 H 1.07995 * 119.95911 * 359.97438 * 10 9 8 35 35 H 1.07989 * 120.03833 * 180.27438 * 11 10 9 36 36 H 0.96999 * 120.00052 * 180.02562 * 17 16 14 37 37 H 1.08002 * 120.03496 * 179.97438 * 22 12 11 38 38 H 1.08001 * 119.96654 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1313 5 6 4.2780 1.3960 0.9177 6 7 4.7545 1.5681 -0.3603 7 7 5.1560 1.2914 1.9705 8 6 6.5994 1.3628 1.7304 9 6 7.3338 1.2231 3.0387 10 6 7.6407 2.3487 3.7815 11 6 8.3087 2.2234 4.9838 12 6 8.6827 0.9665 5.4410 13 8 9.3452 0.8406 6.6191 14 6 9.5725 -0.4121 7.0629 15 1 9.3054 -1.2592 6.4486 16 6 10.1490 -0.6127 8.3078 17 7 10.4747 0.4193 9.0559 18 14 10.4633 -2.3483 8.9228 19 1 11.3797 -3.0470 7.9862 20 1 11.0833 -2.2911 10.2709 21 1 9.1771 -3.0866 9.0000 22 6 8.3782 -0.1613 4.6900 23 6 7.7043 -0.0301 3.4918 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 2.6212 1.4027 -0.9314 28 1 1.3584 2.1317 0.0896 29 1 4.1367 1.7274 -1.0909 30 1 5.7085 1.5301 -0.5314 31 1 4.8197 1.1703 2.8722 32 1 6.8963 0.5571 1.0588 33 1 6.8452 2.3230 1.2767 34 1 7.3541 3.3262 3.4229 35 1 8.5441 3.1023 5.5655 36 1 10.8784 0.2790 9.9266 37 1 8.6681 -1.1401 5.0427 38 1 7.4669 -0.9068 2.9075 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076105925.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:31 Heat of formation + Delta-G solvation = 33.641439 kcal Electronic energy + Delta-G solvation = -19606.619363 eV Core-core repulsion = 16450.064053 eV Total energy + Delta-G solvation = -3156.555310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.86026 -39.64808 -38.36261 -36.11104 -34.50342 -34.00097 -32.07454 -31.80850 -31.00800 -27.79156 -26.96232 -25.23236 -23.63235 -22.13525 -21.45548 -20.47377 -19.86023 -18.92664 -18.61086 -17.68537 -16.62115 -16.50703 -16.24083 -15.80477 -15.53439 -15.44610 -15.39982 -14.93761 -14.72212 -14.44642 -14.35263 -13.94228 -13.56434 -13.04298 -12.95439 -12.73870 -12.45287 -12.34175 -12.19492 -12.12837 -12.01249 -11.19099 -10.80415 -10.69674 -9.93973 -9.78536 -9.72942 -9.00438 -8.64336 -8.48123 -6.16470 0.56816 0.60252 1.35418 1.39168 1.45659 1.51416 2.11370 2.17304 2.29194 2.84118 3.11066 3.30453 3.50766 3.90050 4.05548 4.18496 4.19442 4.33375 4.46626 4.49208 4.57444 4.60185 4.82143 4.85275 4.88720 5.05928 5.14736 5.15397 5.28770 5.54236 5.70886 5.74906 5.76579 5.77323 5.93673 6.01941 6.12340 6.20017 6.55522 6.96612 7.17759 7.76530 7.80501 8.74617 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.027424 B = 0.002876 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.771803 B = 9733.727324 C =10304.497793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.154 4.154 3 C 0.105 3.895 4 N -0.715 5.715 5 C 0.628 3.372 6 N -0.883 5.883 7 N -0.721 5.721 8 C 0.187 3.813 9 C -0.180 4.180 10 C -0.043 4.043 11 C -0.209 4.209 12 C 0.120 3.880 13 O -0.231 6.231 14 C -0.414 4.414 15 H 0.103 0.897 16 C -0.022 4.022 17 N -0.920 5.920 18 Si 1.018 2.982 19 H -0.256 1.256 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.247 4.247 23 C -0.045 4.045 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.412 0.588 30 H 0.403 0.597 31 H 0.411 0.589 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.149 0.851 35 H 0.112 0.888 36 H 0.273 0.727 37 H 0.118 0.882 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.773 -0.182 -20.555 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.173 4.173 3 C -0.026 4.026 4 N -0.462 5.462 5 C 0.262 3.738 6 N -0.443 5.443 7 N -0.364 5.364 8 C 0.064 3.936 9 C -0.181 4.181 10 C -0.061 4.061 11 C -0.228 4.228 12 C 0.069 3.931 13 O -0.137 6.137 14 C -0.490 4.490 15 H 0.120 0.880 16 C -0.220 4.220 17 N -0.557 5.557 18 Si 0.837 3.163 19 H -0.180 1.180 20 H -0.197 1.197 21 H -0.183 1.183 22 C -0.266 4.266 23 C -0.063 4.063 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.247 0.753 30 H 0.233 0.767 31 H 0.247 0.753 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.166 0.834 35 H 0.130 0.870 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -11.038 0.019 -19.612 22.505 hybrid contribution 0.746 -0.550 0.163 0.941 sum -10.292 -0.531 -19.449 22.011 Atomic orbital electron populations 1.23918 0.95586 1.02416 1.00947 1.23034 0.96343 0.98238 0.99677 1.20630 0.94926 0.94814 0.92205 1.72652 0.98958 1.43799 1.30791 1.19049 0.87657 0.86482 0.80594 1.43044 1.12029 1.82523 1.06723 1.44307 1.03976 1.80524 1.07579 1.20056 0.77601 1.02658 0.93261 1.19503 1.06774 0.92629 0.99229 1.20916 0.94274 0.99381 0.91569 1.20473 1.07671 0.94490 1.00173 1.20022 0.90902 0.95498 0.86647 1.83943 1.65561 1.31283 1.32893 1.21790 1.42611 0.82035 1.02597 0.87968 1.26588 0.95928 1.04612 0.94874 1.70172 1.40988 1.32885 1.11699 0.84661 0.79435 0.74382 0.77851 1.18030 1.19716 1.18253 1.21259 1.08589 0.98128 0.98654 1.20976 0.93978 0.97859 0.93530 0.88036 0.87691 0.88695 0.92996 0.91941 0.75330 0.76662 0.75265 0.89974 0.89811 0.83381 0.86970 0.91804 0.86409 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.36 14.32 67.78 0.97 -2.39 16 2 C -0.15 -3.15 9.85 25.65 0.25 -2.90 16 3 C 0.10 2.17 6.75 85.64 0.58 2.75 16 4 N -0.72 -18.32 10.60 -353.10 -3.74 -22.06 16 5 C 0.63 13.17 8.63 260.54 2.25 15.42 16 6 N -0.88 -11.55 8.74 -58.57 -0.51 -12.06 16 7 N -0.72 -15.07 5.66 -353.15 -2.00 -17.07 16 8 C 0.19 3.32 5.18 85.63 0.44 3.76 16 9 C -0.18 -4.74 5.25 -19.84 -0.10 -4.85 16 10 C -0.04 -1.28 9.69 22.25 0.22 -1.07 16 11 C -0.21 -8.39 9.99 22.39 0.22 -8.16 16 12 C 0.12 5.75 6.65 22.58 0.15 5.90 16 13 O -0.23 -13.62 9.76 -22.73 -0.22 -13.84 16 14 C -0.41 -23.74 9.49 67.92 0.64 -23.10 16 15 H 0.10 5.34 5.21 -2.91 -0.02 5.32 16 16 C -0.02 -1.25 5.49 84.84 0.47 -0.78 16 17 N -0.92 -56.02 13.67 21.61 0.30 -55.72 16 18 Si 1.02 42.32 29.55 68.60 2.03 44.34 16 19 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 22 C -0.25 -10.14 9.17 22.39 0.21 -9.93 16 23 C -0.04 -1.38 9.69 22.25 0.22 -1.16 16 24 H 0.10 1.62 7.84 -2.91 -0.02 1.59 16 25 H 0.10 1.57 8.06 -2.91 -0.02 1.55 16 26 H 0.09 2.02 8.06 -2.91 -0.02 2.00 16 27 H 0.05 0.82 5.40 -2.39 -0.01 0.80 16 28 H 0.06 1.30 7.79 -2.39 -0.02 1.28 16 29 H 0.41 4.41 6.25 -92.71 -0.58 3.83 16 30 H 0.40 3.63 7.38 -92.71 -0.68 2.94 16 31 H 0.41 10.08 8.58 -92.71 -0.80 9.29 16 32 H 0.08 1.17 7.87 -2.39 -0.02 1.15 16 33 H 0.08 1.18 8.01 -2.38 -0.02 1.16 16 34 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.11 4.53 8.06 -2.92 -0.02 4.51 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.12 4.98 5.64 -2.91 -0.02 4.97 16 38 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -71.55 328.03 1.41 -70.15 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.95 Total: 32.79 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 6.51 Total: -26.52 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -5.96 Total: -106.92 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.22 Total: -13.84 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -71.55 1.41 -70.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076105925.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.788 kcal (2) G-P(sol) polarization free energy of solvation -71.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds