Wall clock time and date at job start Mon Mar 30 2020 02:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46721 * 110.99812 * 2 1 4 4 C 1.53379 * 108.24898 * 75.25226 * 3 2 1 5 5 N 1.46704 * 108.28066 * 66.76444 * 4 3 2 6 6 C 1.46905 * 110.99944 * 75.43253 * 5 4 3 7 7 C 1.50697 * 109.46700 * 75.96743 * 6 5 4 8 8 O 1.21290 * 120.00294 * 5.40122 * 7 6 5 9 9 N 1.34779 * 119.99672 * 185.40034 * 7 6 5 10 10 C 1.37098 * 119.99895 * 180.02562 * 9 7 6 11 11 H 1.07999 * 120.00225 * 0.02562 * 10 9 7 12 12 C 1.38958 * 119.99874 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99817 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99923 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47657 * 89.99575 * 14 12 10 16 16 H 1.48499 * 109.47080 * 210.00112 * 14 12 10 17 17 H 1.48504 * 109.47366 * 329.99546 * 14 12 10 18 18 C 1.39940 * 112.13529 * 310.64817 * 5 4 3 19 19 C 1.39224 * 117.93211 * 197.77175 * 18 5 4 20 20 C 1.38045 * 120.39818 * 180.27948 * 19 18 5 21 21 C 1.38257 * 120.02255 * 0.02562 * 20 19 18 22 22 C 1.38045 * 120.02164 * 359.87234 * 21 20 19 23 23 C 1.38949 * 122.49043 * 17.83459 * 18 5 4 24 24 H 1.09003 * 109.47403 * 60.00095 * 1 2 3 25 25 H 1.09003 * 109.47324 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47350 * 299.99670 * 1 2 3 27 27 H 1.09000 * 109.70643 * 315.56751 * 3 2 1 28 28 H 1.08989 * 109.70674 * 194.93857 * 3 2 1 29 29 H 1.09003 * 109.70703 * 186.46750 * 4 3 2 30 30 H 1.09005 * 109.70410 * 307.02805 * 4 3 2 31 31 H 1.08999 * 109.47114 * 195.97165 * 6 5 4 32 32 H 1.09006 * 109.46912 * 315.97099 * 6 5 4 33 33 H 0.96998 * 120.00395 * 0.02562 * 9 7 6 34 34 H 0.96999 * 119.99544 * 180.02562 * 13 12 10 35 35 H 1.07995 * 119.79780 * 0.28799 * 19 18 5 36 36 H 1.07997 * 119.98685 * 180.02562 * 20 19 18 37 37 H 1.08007 * 119.98933 * 179.89510 * 21 20 19 38 38 H 1.08007 * 119.79893 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9947 1.3698 0.0000 4 6 1.8207 1.9511 1.4087 5 7 2.6962 1.2103 2.3235 6 6 4.0982 1.6144 2.1532 7 6 4.3167 2.9563 2.8034 8 8 3.4229 3.4754 3.4381 9 7 5.5053 3.5795 2.6796 10 6 5.7043 4.8000 3.2716 11 1 4.9087 5.2619 3.8374 12 6 6.9296 5.4428 3.1435 13 7 7.8977 4.8805 2.4554 14 14 7.2009 7.1054 3.9506 15 1 7.7284 6.9085 5.3247 16 1 8.1777 7.8893 3.1529 17 1 5.9121 7.8403 4.0158 18 6 2.5531 -0.1748 2.1845 19 6 3.0193 -0.9854 3.2160 20 6 2.9093 -2.3587 3.1294 21 6 2.3339 -2.9375 2.0134 22 6 1.8667 -2.1424 0.9862 23 6 1.9703 -0.7563 1.0652 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.4424 1.9755 -0.7184 28 1 3.0520 1.3576 -0.2645 29 1 2.0975 3.0054 1.4080 30 1 0.7830 1.8440 1.7248 31 1 4.7488 0.8745 2.6193 32 1 4.3298 1.6837 1.0903 33 1 6.2200 3.1646 2.1717 34 1 8.7531 5.3291 2.3664 35 1 3.4696 -0.5370 4.0892 36 1 3.2727 -2.9811 3.9336 37 1 2.2496 -4.0121 1.9454 38 1 1.4182 -2.5984 0.1158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109823542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:08 Heat of formation + Delta-G solvation = 18.561729 kcal Electronic energy + Delta-G solvation = -21314.798392 eV Core-core repulsion = 18157.589177 eV Total energy + Delta-G solvation = -3157.209215 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.00593 -38.20242 -36.95575 -35.61420 -33.85845 -31.26343 -30.42387 -30.09556 -28.82357 -26.87742 -24.96540 -24.12367 -23.48641 -21.69507 -19.94629 -18.93715 -17.85754 -17.25991 -16.32333 -16.19205 -15.79173 -14.87294 -14.63527 -14.51447 -14.44294 -14.04534 -13.70468 -13.59414 -13.37089 -13.09691 -12.48241 -12.34701 -12.15838 -12.12678 -11.55208 -11.48906 -11.40034 -11.10835 -11.02815 -10.90863 -10.40759 -10.23835 -9.92500 -9.51575 -9.14366 -8.35544 -7.99035 -7.91104 -7.68902 -6.43414 -3.84482 1.40013 1.46922 3.16656 3.25581 3.30957 3.58106 3.82540 3.86783 3.95920 4.20170 4.77339 4.89655 5.01017 5.03855 5.13225 5.17357 5.21837 5.30582 5.39708 5.46425 5.54476 5.57409 5.60152 5.69495 5.79310 5.91081 6.04080 6.15525 6.22425 6.32269 6.35179 6.60618 6.74012 6.78482 7.14630 7.21545 7.53381 7.59453 8.03578 8.59212 9.15974 9.51587 10.03170 10.74233 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029487 B = 0.004291 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.345244 B = 6523.668022 C = 6987.624881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.494 5.494 3 C 0.013 3.987 4 C 0.026 3.974 5 N -0.465 5.465 6 C 0.049 3.951 7 C 0.442 3.558 8 O -0.576 6.576 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.023 3.977 13 N -0.901 5.901 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.079 3.921 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.129 4.129 22 C -0.106 4.106 23 C 0.059 3.941 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.036 0.964 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.392 0.608 34 H 0.272 0.728 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 -13.051 -5.335 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.211 5.211 3 C -0.116 4.116 4 C -0.103 4.103 5 N -0.180 5.180 6 C -0.080 4.080 7 C 0.227 3.773 8 O -0.459 6.459 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.021 4.021 19 C -0.127 4.127 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.126 4.126 23 C -0.040 4.040 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.119 0.881 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.146 0.854 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.278 -12.601 -4.944 16.996 hybrid contribution 0.696 0.787 -0.004 1.051 sum -9.582 -11.814 -4.948 15.996 Atomic orbital electron populations 1.22503 0.85479 1.02577 1.01286 1.59230 1.08254 1.13434 1.40153 1.22950 1.01996 0.88098 0.98556 1.22825 0.97681 1.00091 0.89726 1.58522 1.06752 1.01271 1.51441 1.22059 0.87579 0.98248 1.00065 1.19679 0.84266 0.86993 0.86402 1.90531 1.43095 1.67334 1.44951 1.41860 1.11913 1.18895 1.47332 1.19694 0.99104 0.94711 1.29389 0.87910 1.25261 0.95222 1.00012 0.97358 1.69613 1.04389 1.39538 1.40670 0.85858 0.78310 0.81302 0.78825 1.20374 1.20917 1.19422 1.19047 1.02063 0.88836 0.92139 1.20986 1.00919 0.93032 0.97784 1.20954 1.00247 0.94356 0.98364 1.20902 1.00274 0.99370 0.94320 1.20790 1.01501 0.91339 0.99015 1.18897 1.03805 0.93093 0.88231 0.90845 0.91011 0.94569 0.89140 0.89702 0.88110 0.90229 0.88931 0.92320 0.77478 0.91835 0.85435 0.86023 0.86179 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.28 60.06 0.56 0.85 16 2 N -0.49 -6.44 4.85 -178.67 -0.87 -7.31 16 3 C 0.01 0.17 5.86 -3.73 -0.02 0.15 16 4 C 0.03 0.41 5.54 -3.74 -0.02 0.39 16 5 N -0.47 -8.25 4.12 -172.20 -0.71 -8.96 16 6 C 0.05 0.91 5.27 -4.97 -0.03 0.88 16 7 C 0.44 10.42 7.28 -10.99 -0.08 10.34 16 8 O -0.58 -15.59 15.18 5.55 0.08 -15.50 16 9 N -0.56 -14.21 5.29 -10.96 -0.06 -14.26 16 10 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 11 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 12 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 13 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 14 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 C 0.08 1.25 5.13 -83.53 -0.43 0.82 16 19 C -0.11 -1.56 9.10 -39.29 -0.36 -1.92 16 20 C -0.12 -1.44 10.04 -39.65 -0.40 -1.84 16 21 C -0.13 -1.45 10.04 -39.65 -0.40 -1.85 16 22 C -0.11 -1.30 9.24 -39.29 -0.36 -1.66 16 23 C 0.06 0.83 5.16 -83.53 -0.43 0.40 16 24 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 25 H 0.07 0.68 7.62 -51.93 -0.40 0.28 16 26 H 0.04 0.41 6.66 -51.93 -0.35 0.06 16 27 H 0.09 1.02 7.97 -51.93 -0.41 0.61 16 28 H 0.08 1.21 6.51 -51.94 -0.34 0.87 16 29 H 0.10 1.82 6.93 -51.93 -0.36 1.46 16 30 H 0.08 1.23 6.61 -51.93 -0.34 0.89 16 31 H 0.09 1.61 7.34 -51.93 -0.38 1.23 16 32 H 0.06 1.00 6.37 -51.93 -0.33 0.67 16 33 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.12 1.28 8.03 -52.48 -0.42 0.86 16 LS Contribution 310.15 15.07 4.67 4.67 Total: -1.00 -31.13 310.15 -8.23 -39.37 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -4.85 Total: 11.09 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -2.21 Total: -1.35 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.91 Total: -54.20 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: 0.08 Total: -15.50 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.13 -8.23 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109823542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.928 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds