Wall clock time and date at job start Mon Mar 30 2020 02:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46721 * 110.99812 * 2 1 4 4 C 1.53379 * 108.24898 * 75.25226 * 3 2 1 5 5 N 1.46704 * 108.28066 * 66.76444 * 4 3 2 6 6 C 1.46905 * 110.99944 * 75.43253 * 5 4 3 7 7 C 1.50697 * 109.46700 * 75.96743 * 6 5 4 8 8 O 1.21290 * 120.00294 * 5.40122 * 7 6 5 9 9 N 1.34779 * 119.99672 * 185.40034 * 7 6 5 10 10 C 1.37098 * 119.99895 * 180.02562 * 9 7 6 11 11 H 1.07999 * 120.00225 * 0.02562 * 10 9 7 12 12 C 1.38958 * 119.99874 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99817 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99923 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47657 * 89.99575 * 14 12 10 16 16 H 1.48499 * 109.47080 * 210.00112 * 14 12 10 17 17 H 1.48504 * 109.47366 * 329.99546 * 14 12 10 18 18 C 1.39940 * 112.13529 * 310.64817 * 5 4 3 19 19 C 1.39224 * 117.93211 * 197.77175 * 18 5 4 20 20 C 1.38045 * 120.39818 * 180.27948 * 19 18 5 21 21 C 1.38257 * 120.02255 * 0.02562 * 20 19 18 22 22 C 1.38045 * 120.02164 * 359.87234 * 21 20 19 23 23 C 1.38949 * 122.49043 * 17.83459 * 18 5 4 24 24 H 1.09003 * 109.47403 * 60.00095 * 1 2 3 25 25 H 1.09003 * 109.47324 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47350 * 299.99670 * 1 2 3 27 27 H 1.09000 * 109.70643 * 315.56751 * 3 2 1 28 28 H 1.08989 * 109.70674 * 194.93857 * 3 2 1 29 29 H 1.09003 * 109.70703 * 186.46750 * 4 3 2 30 30 H 1.09005 * 109.70410 * 307.02805 * 4 3 2 31 31 H 1.08999 * 109.47114 * 195.97165 * 6 5 4 32 32 H 1.09006 * 109.46912 * 315.97099 * 6 5 4 33 33 H 0.96998 * 120.00395 * 0.02562 * 9 7 6 34 34 H 0.96999 * 119.99544 * 180.02562 * 13 12 10 35 35 H 1.07995 * 119.79780 * 0.28799 * 19 18 5 36 36 H 1.07997 * 119.98685 * 180.02562 * 20 19 18 37 37 H 1.08007 * 119.98933 * 179.89510 * 21 20 19 38 38 H 1.08007 * 119.79893 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9947 1.3698 0.0000 4 6 1.8207 1.9511 1.4087 5 7 2.6962 1.2103 2.3235 6 6 4.0982 1.6144 2.1532 7 6 4.3167 2.9563 2.8034 8 8 3.4229 3.4754 3.4381 9 7 5.5053 3.5795 2.6796 10 6 5.7043 4.8000 3.2716 11 1 4.9087 5.2619 3.8374 12 6 6.9296 5.4428 3.1435 13 7 7.8977 4.8805 2.4554 14 14 7.2009 7.1054 3.9506 15 1 7.7284 6.9085 5.3247 16 1 8.1777 7.8893 3.1529 17 1 5.9121 7.8403 4.0158 18 6 2.5531 -0.1748 2.1845 19 6 3.0193 -0.9854 3.2160 20 6 2.9093 -2.3587 3.1294 21 6 2.3339 -2.9375 2.0134 22 6 1.8667 -2.1424 0.9862 23 6 1.9703 -0.7563 1.0652 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.4424 1.9755 -0.7184 28 1 3.0520 1.3576 -0.2645 29 1 2.0975 3.0054 1.4080 30 1 0.7830 1.8440 1.7248 31 1 4.7488 0.8745 2.6193 32 1 4.3298 1.6837 1.0903 33 1 6.2200 3.1646 2.1717 34 1 8.7531 5.3291 2.3664 35 1 3.4696 -0.5370 4.0892 36 1 3.2727 -2.9811 3.9336 37 1 2.2496 -4.0121 1.9454 38 1 1.4182 -2.5984 0.1158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109823542.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:08 Heat of formation + Delta-G solvation = -3.235920 kcal Electronic energy + Delta-G solvation = -21315.743609 eV Core-core repulsion = 18157.589177 eV Total energy + Delta-G solvation = -3158.154432 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.14516 -40.01698 -38.00526 -36.89694 -35.86989 -33.31372 -31.48252 -31.13856 -30.14868 -28.14618 -26.57403 -25.46783 -24.59321 -22.79700 -21.41333 -20.48322 -19.82039 -18.45266 -17.55052 -17.44133 -17.27047 -16.56311 -16.19133 -15.84173 -15.49363 -15.33443 -15.21195 -15.07856 -14.59318 -14.35944 -13.89734 -13.53674 -13.47738 -13.29091 -13.09147 -12.96011 -12.76831 -12.44472 -12.42863 -12.14181 -12.11528 -12.01401 -11.52585 -11.03303 -10.45388 -10.04929 -10.00663 -8.94881 -8.87673 -8.48640 -5.98028 0.38903 0.46030 1.36625 1.40948 1.53655 1.98711 2.24349 2.49117 2.75710 2.90968 3.17031 3.26992 3.67262 3.84414 3.99329 4.03328 4.16432 4.24330 4.27222 4.40151 4.44129 4.48765 4.55564 4.56530 4.63032 4.67983 4.86898 4.94795 5.07747 5.28654 5.36652 5.38774 5.61910 5.64563 5.80065 5.94913 6.03623 6.14823 6.47416 6.56463 7.09486 7.51042 8.06426 8.68733 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.029487 B = 0.004291 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.345244 B = 6523.668022 C = 6987.624881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.494 5.494 3 C 0.022 3.978 4 C 0.029 3.971 5 N -0.487 5.487 6 C 0.066 3.934 7 C 0.443 3.557 8 O -0.614 6.614 9 N -0.571 5.571 10 C -0.334 4.334 11 H 0.079 0.921 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.994 3.006 15 H -0.271 1.271 16 H -0.270 1.270 17 H -0.273 1.273 18 C 0.050 3.950 19 C -0.126 4.126 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.107 4.107 23 C 0.049 3.951 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.024 0.976 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.396 0.604 34 H 0.278 0.722 35 H 0.113 0.887 36 H 0.147 0.853 37 H 0.156 0.844 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 -14.872 -6.300 19.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.210 5.210 3 C -0.107 4.107 4 C -0.100 4.100 5 N -0.202 5.202 6 C -0.063 4.063 7 C 0.230 3.770 8 O -0.500 6.500 9 N -0.208 5.208 10 C -0.463 4.463 11 H 0.097 0.903 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.817 3.183 15 H -0.196 1.196 16 H -0.194 1.194 17 H -0.197 1.197 18 C -0.049 4.049 19 C -0.146 4.146 20 C -0.136 4.136 21 C -0.136 4.136 22 C -0.127 4.127 23 C -0.050 4.050 24 H 0.111 0.889 25 H 0.105 0.895 26 H 0.043 0.957 27 H 0.131 0.869 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.229 0.771 34 H 0.088 0.912 35 H 0.131 0.869 36 H 0.164 0.836 37 H 0.174 0.826 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.590 -14.458 -5.927 18.876 hybrid contribution 0.741 1.236 0.298 1.472 sum -9.849 -13.221 -5.629 17.421 Atomic orbital electron populations 1.22607 0.83880 1.03706 1.01681 1.59343 1.09590 1.12557 1.39502 1.22858 1.01903 0.88875 0.97094 1.22729 0.97308 0.98462 0.91459 1.58467 1.05957 1.02998 1.52781 1.21829 0.89166 0.95041 1.00232 1.20542 0.83032 0.88226 0.85233 1.90494 1.44164 1.68819 1.46525 1.41908 1.12627 1.18648 1.47613 1.19658 0.99382 0.96291 1.30987 0.90279 1.26045 0.94418 1.03186 0.97407 1.69675 1.04718 1.40785 1.40843 0.84919 0.78155 0.77012 0.78200 1.19645 1.19423 1.19735 1.19153 1.04366 0.87672 0.93664 1.21060 1.01850 0.94389 0.97299 1.21257 0.99557 0.93330 0.99488 1.21327 0.98109 1.01097 0.93079 1.21097 1.01120 0.90438 1.00041 1.19126 1.03667 0.94191 0.87997 0.88903 0.89535 0.95712 0.86944 0.90721 0.91035 0.90171 0.87884 0.90838 0.77061 0.91213 0.86935 0.83562 0.82643 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.28 127.69 1.18 1.68 16 2 N -0.49 -11.97 4.85 -719.20 -3.49 -15.46 16 3 C 0.02 0.57 5.86 86.46 0.51 1.08 16 4 C 0.03 0.97 5.54 86.47 0.48 1.45 16 5 N -0.49 -17.72 4.12 -698.71 -2.88 -20.60 16 6 C 0.07 2.52 5.27 85.55 0.45 2.97 16 7 C 0.44 21.81 7.28 87.66 0.64 22.45 16 8 O -0.61 -34.98 15.18 -3.06 -0.05 -35.02 16 9 N -0.57 -29.87 5.29 -306.98 -1.62 -31.49 16 10 C -0.33 -19.13 9.68 84.04 0.81 -18.31 16 11 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 12 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 13 N -0.92 -49.85 13.05 21.67 0.28 -49.56 16 14 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 C 0.05 1.58 5.13 38.25 0.20 1.77 16 19 C -0.13 -3.62 9.10 22.46 0.20 -3.41 16 20 C -0.12 -2.54 10.04 22.23 0.22 -2.32 16 21 C -0.12 -2.18 10.04 22.23 0.22 -1.96 16 22 C -0.11 -2.27 9.24 22.46 0.21 -2.06 16 23 C 0.05 1.31 5.16 38.25 0.20 1.51 16 24 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 25 H 0.09 1.37 7.62 -2.39 -0.02 1.35 16 26 H 0.02 0.52 6.66 -2.39 -0.02 0.51 16 27 H 0.11 2.40 7.97 -2.39 -0.02 2.38 16 28 H 0.07 2.10 6.51 -2.39 -0.02 2.09 16 29 H 0.07 2.74 6.93 -2.39 -0.02 2.72 16 30 H 0.08 2.57 6.61 -2.38 -0.02 2.55 16 31 H 0.10 3.67 7.34 -2.39 -0.02 3.65 16 32 H 0.07 2.55 6.37 -2.38 -0.02 2.54 16 33 H 0.40 19.74 7.90 -92.71 -0.73 19.01 16 34 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 35 H 0.11 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.14 2.40 8.03 -2.91 -0.02 2.38 16 Total: -1.00 -68.60 310.15 0.42 -68.19 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 0.35 Total: 34.11 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: 5.79 Total: 4.74 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -7.71 Total: -117.11 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.05 Total: -35.02 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -68.60 0.42 -68.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109823542.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.949 kcal (2) G-P(sol) polarization free energy of solvation -68.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds