Wall clock time and date at job start Mon Mar 30 2020 02:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35736 * 116.99868 * 2 1 4 4 C 1.39284 * 120.84938 * 359.97438 * 3 2 1 5 5 C 1.37945 * 119.09291 * 180.02562 * 4 3 2 6 6 N 1.31976 * 120.82580 * 359.97438 * 5 4 3 7 7 C 1.31947 * 121.86329 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.59036 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.46821 * 274.91791 * 8 7 6 10 10 C 1.46900 * 110.99788 * 199.57534 * 9 8 7 11 11 C 1.50706 * 109.46669 * 170.00096 * 10 9 8 12 12 H 1.08000 * 120.00000 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99583 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99945 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99703 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46864 * 90.00093 * 15 13 11 17 17 H 1.48500 * 109.46883 * 209.99743 * 15 13 11 18 18 H 1.48491 * 109.47437 * 330.00335 * 15 13 11 19 19 C 1.46901 * 110.99855 * 75.62456 * 9 8 7 20 20 C 1.52997 * 109.47011 * 64.06671 * 19 9 8 21 21 C 1.47201 * 109.47032 * 179.82583 * 20 19 9 22 22 N 9.13895 * 120.95901 * 345.75971 * 2 1 3 23 23 C 1.37994 * 120.81947 * 0.26757 * 7 6 5 24 24 H 1.08996 * 109.47405 * 300.00303 * 1 2 3 25 25 H 1.09004 * 109.47152 * 60.00101 * 1 2 3 26 26 H 1.09003 * 109.47278 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.45367 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.58862 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47057 * 154.92387 * 8 7 6 30 30 H 1.08999 * 109.47069 * 34.91567 * 8 7 6 31 31 H 1.08998 * 109.47445 * 290.00425 * 10 9 8 32 32 H 1.09001 * 109.46594 * 50.00459 * 10 9 8 33 33 H 0.97006 * 119.99872 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47399 * 304.06699 * 19 9 8 35 35 H 1.08997 * 109.47165 * 184.07018 * 19 9 8 36 36 H 1.09001 * 109.47270 * 299.82218 * 20 19 9 37 37 H 1.09003 * 109.47339 * 59.82832 * 20 19 9 38 38 H 1.08004 * 120.45076 * 179.70797 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9676 3.5980 -0.0011 6 7 3.2865 3.6457 -0.0005 7 6 4.0231 2.5510 0.0000 8 6 5.5258 2.6651 0.0011 9 7 6.0060 2.8206 -1.3784 10 6 7.4301 2.4753 -1.4822 11 6 7.8260 2.4077 -2.9347 12 1 7.0932 2.6023 -3.7038 13 6 9.1239 2.0975 -3.2817 14 7 10.0163 1.8611 -2.3451 15 14 9.6145 2.0130 -5.0821 16 1 10.0767 3.3505 -5.5325 17 1 10.7125 1.0274 -5.2502 18 1 8.4445 1.5941 -5.8949 19 6 5.7570 4.1816 -1.8722 20 6 6.5681 5.1807 -1.0447 21 6 6.3218 6.5440 -1.5422 22 7 6.1303 7.5962 -1.9278 23 6 3.4345 1.3028 -0.0055 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.2244 2.3567 -0.0005 28 1 1.4008 4.5173 -0.0011 29 1 5.9582 1.7644 0.4370 30 1 5.8238 3.5328 0.5896 31 1 8.0261 3.2360 -0.9781 32 1 7.6042 1.5071 -1.0126 33 1 10.9293 1.6425 -2.5893 34 1 4.6955 4.4123 -1.7822 35 1 6.0559 4.2489 -2.9183 36 1 6.2670 5.1156 0.0008 37 1 7.6294 4.9481 -1.1324 38 1 4.0432 0.4107 -0.0098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273216410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:37 Heat of formation + Delta-G solvation = 33.222548 kcal Electronic energy + Delta-G solvation = -20630.756117 eV Core-core repulsion = 17474.182642 eV Total energy + Delta-G solvation = -3156.573474 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60045 -38.58552 -37.40379 -35.78992 -32.78244 -31.93485 -31.39507 -30.06412 -28.08168 -27.13578 -25.31447 -23.72476 -23.24195 -21.63821 -19.87398 -17.98248 -17.38818 -16.83092 -16.27914 -15.99535 -15.63287 -15.30979 -14.85322 -14.54873 -14.27057 -14.09997 -13.78959 -13.46166 -13.18742 -13.06084 -12.51886 -12.12210 -11.96624 -11.91420 -11.70174 -11.48311 -11.23172 -11.13674 -11.08863 -10.74511 -10.60809 -10.12265 -9.93596 -9.43098 -9.25569 -8.95483 -8.81034 -8.47513 -7.38558 -6.07476 -4.08511 1.19483 1.43931 3.01551 3.20291 3.23891 3.31422 3.38392 3.42388 3.85245 4.38769 4.45504 4.49112 4.61394 4.87597 4.88574 4.91778 5.10823 5.20155 5.26308 5.29601 5.35818 5.54357 5.64459 5.76822 5.87906 5.93027 6.02413 6.11436 6.19264 6.39897 6.59555 6.75139 7.15035 7.15693 7.22522 7.72610 7.92258 8.03526 8.07273 8.19938 8.42858 8.98795 9.56473 11.02936 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.004933 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.378031 B = 5675.229647 C = 6925.177588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.163 3.837 4 C -0.272 4.272 5 C 0.134 3.866 6 N -0.501 5.501 7 C 0.186 3.814 8 C 0.090 3.910 9 N -0.521 5.521 10 C 0.186 3.814 11 C -0.508 4.508 12 H 0.064 0.936 13 C 0.059 3.941 14 N -0.897 5.897 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C 0.073 3.927 20 C -0.071 4.071 21 C 0.229 3.771 22 N -0.467 5.467 23 C -0.184 4.184 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.100 0.900 27 H 0.133 0.867 28 H 0.153 0.847 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.004 0.996 32 H 0.035 0.965 33 H 0.262 0.738 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.489 -2.201 7.733 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.110 3.890 4 C -0.294 4.294 5 C -0.023 4.023 6 N -0.215 5.215 7 C 0.049 3.951 8 C -0.038 4.038 9 N -0.244 5.244 10 C 0.062 3.938 11 C -0.547 4.547 12 H 0.082 0.918 13 C -0.143 4.143 14 N -0.536 5.536 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.058 4.058 20 C -0.113 4.113 21 C -0.088 4.088 22 N -0.145 5.145 23 C -0.205 4.205 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.150 0.850 28 H 0.170 0.830 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.342 -0.469 6.883 17.739 hybrid contribution 0.110 -0.710 -0.335 0.792 sum -16.232 -1.178 6.548 17.542 Atomic orbital electron populations 1.23083 0.78211 1.04051 1.01457 1.86077 1.21537 1.26658 1.88059 1.19338 0.92502 0.84318 0.92850 1.22103 1.01060 0.93467 1.12733 1.22471 0.90327 0.96673 0.92826 1.67584 1.06620 1.32180 1.15071 1.21187 0.96744 0.87034 0.90104 1.21107 0.87498 1.02377 0.92836 1.62338 1.22876 1.22491 1.16696 1.19917 0.79749 0.96196 0.97928 1.21119 0.94642 1.47181 0.91765 0.91791 1.24929 0.96513 0.95372 0.97454 1.69934 1.03479 1.47893 1.32311 0.86555 0.78242 0.77790 0.85221 1.20747 1.21288 1.19782 1.22069 0.98512 0.85652 0.99529 1.20192 1.05611 0.83898 1.01575 1.29293 0.92141 0.94660 0.92702 1.81150 1.10320 1.12902 1.10100 1.21328 0.91550 1.00200 1.07436 0.92592 0.92468 0.88117 0.84960 0.82989 0.89227 0.92597 0.97867 0.94729 0.92863 0.90853 0.89445 0.88035 0.86172 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.84 101.05 0.99 1.19 16 2 O -0.31 -3.69 10.51 -18.91 -0.20 -3.89 16 3 C 0.16 2.11 6.74 -38.82 -0.26 1.84 16 4 C -0.27 -3.03 9.11 -39.30 -0.36 -3.39 16 5 C 0.13 1.62 11.17 -17.60 -0.20 1.43 16 6 N -0.50 -7.33 9.03 -9.55 -0.09 -7.41 16 7 C 0.19 2.80 5.96 -82.63 -0.49 2.30 16 8 C 0.09 1.42 5.19 -4.97 -0.03 1.39 16 9 N -0.52 -9.81 4.62 -237.51 -1.10 -10.91 16 10 C 0.19 4.22 4.46 -4.97 -0.02 4.19 16 11 C -0.51 -13.09 8.52 -34.44 -0.29 -13.39 16 12 H 0.06 1.66 7.10 -52.49 -0.37 1.29 16 13 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -24.96 13.29 55.43 0.74 -24.22 16 15 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.07 1.28 4.98 -3.83 -0.02 1.26 16 20 C -0.07 -1.13 5.07 -29.52 -0.15 -1.28 16 21 C 0.23 3.94 15.44 -20.73 -0.32 3.62 16 22 N -0.47 -8.89 18.54 42.19 0.78 -8.11 16 23 C -0.18 -2.64 9.68 -39.30 -0.38 -3.02 16 24 H 0.06 0.33 7.71 -51.93 -0.40 -0.07 16 25 H 0.06 0.37 7.71 -51.93 -0.40 -0.03 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.13 1.08 6.47 -52.48 -0.34 0.74 16 28 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.09 1.34 7.64 -51.93 -0.40 0.94 16 30 H 0.06 0.81 5.84 -51.93 -0.30 0.51 16 31 H 0.00 0.08 5.99 -51.93 -0.31 -0.23 16 32 H 0.03 0.84 7.83 -51.93 -0.41 0.44 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.07 1.26 6.56 -51.93 -0.34 0.91 16 35 H 0.09 1.70 6.86 -51.93 -0.36 1.35 16 36 H 0.10 1.41 6.22 -51.93 -0.32 1.09 16 37 H 0.12 2.07 6.27 -51.93 -0.33 1.74 16 38 H 0.14 1.98 8.06 -52.48 -0.42 1.55 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -30.29 323.23 -6.32 -36.61 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -4.68 Total: -0.47 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.62 Total: -2.37 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.33 Total: -50.66 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.20 Total: -3.89 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.29 -6.32 -36.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273216410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.828 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds