Wall clock time and date at job start Mon Mar 30 2020 02:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35736 * 116.99868 * 2 1 4 4 C 1.39284 * 120.84938 * 359.97438 * 3 2 1 5 5 C 1.37945 * 119.09291 * 180.02562 * 4 3 2 6 6 N 1.31976 * 120.82580 * 359.97438 * 5 4 3 7 7 C 1.31947 * 121.86329 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.59036 * 180.02562 * 7 6 5 9 9 N 1.46905 * 109.46821 * 274.91791 * 8 7 6 10 10 C 1.46900 * 110.99788 * 199.57534 * 9 8 7 11 11 C 1.50706 * 109.46669 * 170.00096 * 10 9 8 12 12 H 1.08000 * 120.00000 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99583 * 180.02562 * 11 10 9 14 14 N 1.31508 * 119.99945 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99703 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46864 * 90.00093 * 15 13 11 17 17 H 1.48500 * 109.46883 * 209.99743 * 15 13 11 18 18 H 1.48491 * 109.47437 * 330.00335 * 15 13 11 19 19 C 1.46901 * 110.99855 * 75.62456 * 9 8 7 20 20 C 1.52997 * 109.47011 * 64.06671 * 19 9 8 21 21 C 1.47201 * 109.47032 * 179.82583 * 20 19 9 22 22 N 9.13895 * 120.95901 * 345.75971 * 2 1 3 23 23 C 1.37994 * 120.81947 * 0.26757 * 7 6 5 24 24 H 1.08996 * 109.47405 * 300.00303 * 1 2 3 25 25 H 1.09004 * 109.47152 * 60.00101 * 1 2 3 26 26 H 1.09003 * 109.47278 * 180.02562 * 1 2 3 27 27 H 1.08003 * 120.45367 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.58862 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47057 * 154.92387 * 8 7 6 30 30 H 1.08999 * 109.47069 * 34.91567 * 8 7 6 31 31 H 1.08998 * 109.47445 * 290.00425 * 10 9 8 32 32 H 1.09001 * 109.46594 * 50.00459 * 10 9 8 33 33 H 0.97006 * 119.99872 * 179.97438 * 14 13 11 34 34 H 1.09002 * 109.47399 * 304.06699 * 19 9 8 35 35 H 1.08997 * 109.47165 * 184.07018 * 19 9 8 36 36 H 1.09001 * 109.47270 * 299.82218 * 20 19 9 37 37 H 1.09003 * 109.47339 * 59.82832 * 20 19 9 38 38 H 1.08004 * 120.45076 * 179.70797 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9676 3.5980 -0.0011 6 7 3.2865 3.6457 -0.0005 7 6 4.0231 2.5510 0.0000 8 6 5.5258 2.6651 0.0011 9 7 6.0060 2.8206 -1.3784 10 6 7.4301 2.4753 -1.4822 11 6 7.8260 2.4077 -2.9347 12 1 7.0932 2.6023 -3.7038 13 6 9.1239 2.0975 -3.2817 14 7 10.0163 1.8611 -2.3451 15 14 9.6145 2.0130 -5.0821 16 1 10.0767 3.3505 -5.5325 17 1 10.7125 1.0274 -5.2502 18 1 8.4445 1.5941 -5.8949 19 6 5.7570 4.1816 -1.8722 20 6 6.5681 5.1807 -1.0447 21 6 6.3218 6.5440 -1.5422 22 7 6.1303 7.5962 -1.9278 23 6 3.4345 1.3028 -0.0055 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.2244 2.3567 -0.0005 28 1 1.4008 4.5173 -0.0011 29 1 5.9582 1.7644 0.4370 30 1 5.8238 3.5328 0.5896 31 1 8.0261 3.2360 -0.9781 32 1 7.6042 1.5071 -1.0126 33 1 10.9293 1.6425 -2.5893 34 1 4.6955 4.4123 -1.7822 35 1 6.0559 4.2489 -2.9183 36 1 6.2670 5.1156 0.0008 37 1 7.6294 4.9481 -1.1324 38 1 4.0432 0.4107 -0.0098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273216410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:37 Heat of formation + Delta-G solvation = 13.582137 kcal Electronic energy + Delta-G solvation = -20631.607789 eV Core-core repulsion = 17474.182642 eV Total energy + Delta-G solvation = -3157.425146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55797 -39.66685 -38.67557 -37.25407 -34.69821 -33.09810 -32.35622 -31.50517 -29.31165 -28.26410 -26.64535 -25.32293 -24.29915 -22.84189 -21.30043 -19.05895 -18.62875 -18.17840 -17.84034 -16.93242 -16.70504 -16.60373 -16.21262 -15.97014 -15.52044 -15.32181 -15.07023 -14.67186 -14.39901 -14.20695 -14.07413 -13.52119 -13.41282 -13.14032 -12.90981 -12.82888 -12.65199 -12.49827 -12.43662 -12.33911 -12.08665 -11.82998 -11.48751 -11.22585 -10.51804 -10.39535 -9.95931 -9.76806 -8.91242 -8.11272 -6.17188 0.20229 0.45953 1.45010 1.47309 1.56461 1.78737 1.83086 2.24182 2.46337 2.80432 3.09212 3.23681 3.41511 3.69810 3.79849 3.99433 4.18688 4.27885 4.30057 4.33429 4.40288 4.40784 4.54130 4.65111 4.74142 4.78874 4.92890 4.95260 5.07252 5.16063 5.24742 5.42488 5.43717 5.66546 5.76826 6.15240 6.31760 6.36405 6.61415 6.68135 6.97889 7.18086 7.51244 8.98498 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015244 B = 0.004933 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.378031 B = 5675.229647 C = 6925.177588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.158 3.842 4 C -0.260 4.260 5 C 0.129 3.871 6 N -0.521 5.521 7 C 0.172 3.828 8 C 0.093 3.907 9 N -0.529 5.529 10 C 0.200 3.800 11 C -0.515 4.515 12 H 0.057 0.943 13 C 0.013 3.987 14 N -0.927 5.927 15 Si 0.949 3.051 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.270 1.270 19 C 0.080 3.920 20 C -0.057 4.057 21 C 0.247 3.753 22 N -0.495 5.495 23 C -0.204 4.204 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.167 0.833 28 H 0.183 0.817 29 H 0.089 0.911 30 H 0.069 0.931 31 H -0.001 1.001 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.128 0.872 37 H 0.109 0.891 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.625 -1.928 7.912 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.104 3.896 4 C -0.281 4.281 5 C -0.028 4.028 6 N -0.234 5.234 7 C 0.036 3.964 8 C -0.035 4.035 9 N -0.252 5.252 10 C 0.075 3.925 11 C -0.554 4.554 12 H 0.075 0.925 13 C -0.186 4.186 14 N -0.568 5.568 15 Si 0.776 3.224 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.195 1.195 19 C -0.050 4.050 20 C -0.099 4.099 21 C -0.069 4.069 22 N -0.174 5.174 23 C -0.225 4.225 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.138 0.862 27 H 0.184 0.816 28 H 0.200 0.800 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.017 0.983 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.127 0.873 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.507 -0.198 7.063 19.810 hybrid contribution 0.605 -0.850 -0.349 1.100 sum -17.903 -1.048 6.714 19.149 Atomic orbital electron populations 1.23434 0.75749 1.05887 1.02710 1.86060 1.24104 1.26322 1.87804 1.19447 0.92215 0.85457 0.92468 1.22428 1.02696 0.92295 1.10669 1.23024 0.89654 0.98328 0.91829 1.67540 1.08003 1.31981 1.15908 1.20932 0.96122 0.87608 0.91739 1.21091 0.88536 1.02941 0.90935 1.62166 1.20369 1.23392 1.19245 1.19577 0.82026 0.94953 0.95954 1.21432 0.94507 1.46197 0.93245 0.92463 1.25608 0.96738 0.95415 1.00829 1.70026 1.03718 1.49128 1.33898 0.85681 0.77834 0.77714 0.81180 1.20472 1.21076 1.19516 1.21930 0.99153 0.85490 0.98442 1.20095 1.04537 0.82650 1.02618 1.29370 0.91237 0.94495 0.91817 1.81167 1.11299 1.13841 1.11097 1.21365 0.92773 0.99808 1.08589 0.90953 0.91441 0.86231 0.81559 0.79993 0.89231 0.91345 0.98345 0.96872 0.92893 0.89910 0.91720 0.85478 0.87302 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.84 113.37 1.12 1.30 16 2 O -0.33 -7.28 10.51 -90.59 -0.95 -8.23 16 3 C 0.16 3.83 6.74 22.76 0.15 3.98 16 4 C -0.26 -5.01 9.11 22.45 0.20 -4.81 16 5 C 0.13 2.74 11.17 84.60 0.95 3.69 16 6 N -0.52 -14.31 9.03 -184.12 -1.66 -15.97 16 7 C 0.17 5.06 5.96 42.48 0.25 5.32 16 8 C 0.09 2.90 5.19 85.56 0.44 3.34 16 9 N -0.53 -20.01 4.62 -905.34 -4.18 -24.20 16 10 C 0.20 9.23 4.46 85.56 0.38 9.61 16 11 C -0.52 -26.87 8.52 25.60 0.22 -26.65 16 12 H 0.06 3.01 7.10 -2.91 -0.02 2.99 16 13 C 0.01 0.68 5.46 84.66 0.46 1.14 16 14 N -0.93 -52.21 13.29 21.45 0.28 -51.93 16 15 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 C 0.08 2.79 4.98 86.30 0.43 3.22 16 20 C -0.06 -1.77 5.07 28.79 0.15 -1.63 16 21 C 0.25 8.27 15.44 89.43 1.38 9.65 16 22 N -0.50 -18.45 18.54 20.02 0.37 -18.08 16 23 C -0.20 -5.80 9.68 22.45 0.22 -5.58 16 24 H 0.07 0.60 7.71 -2.39 -0.02 0.58 16 25 H 0.07 0.65 7.71 -2.38 -0.02 0.63 16 26 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.17 1.97 6.47 -2.91 -0.02 1.96 16 28 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.09 2.74 7.64 -2.39 -0.02 2.72 16 30 H 0.07 1.92 5.84 -2.39 -0.01 1.91 16 31 H 0.00 -0.05 5.99 -2.39 -0.01 -0.06 16 32 H 0.01 0.66 7.83 -2.39 -0.02 0.64 16 33 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 34 H 0.08 2.75 6.56 -2.39 -0.02 2.74 16 35 H 0.06 2.54 6.86 -2.39 -0.02 2.52 16 36 H 0.13 3.30 6.22 -2.39 -0.01 3.29 16 37 H 0.11 3.72 6.27 -2.39 -0.01 3.71 16 38 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -64.84 323.23 3.32 -61.53 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.08 Total: 9.16 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 6.35 Total: 2.57 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -5.19 Total: -110.17 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.95 Total: -8.23 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -64.84 3.32 -61.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273216410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.111 kcal (2) G-P(sol) polarization free energy of solvation -64.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds