Wall clock time and date at job start Mon Mar 30 2020 02:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46508 * 120.00010 * 2 1 4 4 C 1.39193 * 120.00422 * 180.02562 * 2 1 3 5 5 C 1.39450 * 120.83111 * 180.02562 * 4 2 1 6 6 C 1.38228 * 119.28060 * 179.97438 * 5 4 2 7 7 N 1.31656 * 121.00064 * 359.74217 * 6 5 4 8 8 C 1.32893 * 121.81547 * 0.53128 * 7 6 5 9 9 C 1.48028 * 119.69360 * 179.74790 * 8 7 6 10 10 O 1.21565 * 119.99193 * 174.20675 * 9 8 7 11 11 N 1.34777 * 120.00321 * 354.20490 * 9 8 7 12 12 C 1.36791 * 119.99878 * 174.05810 * 11 9 8 13 13 H 1.08001 * 119.99494 * 225.09932 * 12 11 9 14 14 C 1.39103 * 119.99942 * 45.10170 * 12 11 9 15 15 N 1.31330 * 119.99958 * 17.56866 * 14 12 11 16 16 Si 1.86794 * 119.99891 * 197.56839 * 14 12 11 17 17 H 1.48503 * 109.47210 * 180.02562 * 16 14 12 18 18 H 1.48509 * 109.47155 * 299.99925 * 16 14 12 19 19 H 1.48496 * 109.47277 * 59.99993 * 16 14 12 20 20 C 1.46501 * 119.99702 * 354.06045 * 11 9 8 21 21 C 1.53003 * 117.49671 * 184.07628 * 20 11 9 22 22 C 1.52997 * 117.49699 * 115.41935 * 20 11 9 23 23 C 1.39130 * 120.60395 * 359.47011 * 8 7 6 24 24 H 1.09000 * 109.47079 * 270.00257 * 1 2 3 25 25 H 1.08997 * 109.47619 * 29.99539 * 1 2 3 26 26 H 1.09000 * 109.47165 * 150.00099 * 1 2 3 27 27 H 1.09000 * 109.46984 * 240.00296 * 3 2 1 28 28 H 1.09002 * 109.46840 * 359.97438 * 3 2 1 29 29 H 1.08991 * 109.47094 * 120.00141 * 3 2 1 30 30 H 1.07996 * 120.35869 * 359.96059 * 5 4 2 31 31 H 1.07996 * 119.49521 * 180.02562 * 6 5 4 32 32 H 0.96994 * 119.99494 * 174.96674 * 15 14 12 33 33 H 1.08990 * 115.55189 * 329.74736 * 20 11 9 34 34 H 1.08999 * 117.49385 * 0.02562 * 21 20 11 35 35 H 1.08997 * 117.49756 * 145.01782 * 21 20 11 36 36 H 1.08998 * 117.49933 * 214.97933 * 22 20 11 37 37 H 1.09000 * 117.49960 * 359.96978 * 22 20 11 38 38 H 1.08008 * 120.52467 * 180.23204 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1610 -1.2054 -0.0005 5 6 3.5553 -1.2255 0.0000 6 6 4.2139 -2.4408 0.0000 7 7 3.5448 -3.5747 0.0045 8 6 2.2162 -3.6042 -0.0011 9 6 1.5117 -4.9060 -0.0013 10 8 0.3007 -4.9416 0.0999 11 7 2.2126 -6.0517 -0.1135 12 6 1.5772 -7.2569 0.0081 13 1 2.0140 -8.0391 0.6114 14 6 0.3687 -7.4751 -0.6452 15 7 0.0054 -6.6902 -1.6335 16 14 -0.7375 -8.8845 -0.1167 17 1 -1.9563 -8.9020 -0.9650 18 1 -0.0095 -10.1697 -0.2704 19 1 -1.1260 -8.7026 1.3050 20 6 3.6550 -6.0061 -0.3658 21 6 4.3775 -7.3380 -0.5781 22 6 4.5801 -6.5557 0.7219 23 6 1.4815 -2.4227 -0.0011 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 2.8241 1.3265 -0.8900 28 1 1.4891 2.0973 -0.0005 29 1 2.8241 1.3265 0.8899 30 1 4.1145 -0.3016 0.0002 31 1 5.2937 -2.4605 0.0008 32 1 -0.8006 -6.8853 -2.1365 33 1 4.0054 -5.1468 -0.9375 34 1 3.7794 -8.2480 -0.5305 35 1 5.2033 -7.3548 -1.2893 36 1 5.5392 -6.0582 0.8655 37 1 4.1155 -6.9507 1.6254 38 1 0.4017 -2.4481 -0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275822960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:44 Heat of formation + Delta-G solvation = 73.693485 kcal Electronic energy + Delta-G solvation = -21533.922337 eV Core-core repulsion = 18379.103814 eV Total energy + Delta-G solvation = -3154.818523 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.96130 -38.15057 -36.53052 -35.80994 -32.76957 -31.28043 -30.75839 -30.40006 -28.25968 -25.34698 -25.18560 -22.89195 -21.73787 -21.38671 -20.62428 -19.49339 -17.46592 -16.46175 -15.86713 -15.75987 -15.12743 -14.89686 -14.60212 -14.39588 -13.97278 -13.71467 -13.51083 -13.33428 -12.82754 -12.68724 -12.39794 -12.23261 -12.12750 -11.75755 -11.20257 -10.89798 -10.80202 -10.75275 -10.56635 -10.29800 -10.14579 -9.72987 -9.60634 -8.74243 -8.57231 -8.51043 -7.90159 -7.46121 -6.90580 -6.07120 -3.81573 1.48439 1.95065 3.11306 3.33655 3.39666 3.43262 3.99068 4.29887 4.72381 4.86283 4.90900 4.96101 5.12307 5.15670 5.24078 5.33128 5.40459 5.49852 5.53982 5.55610 5.69684 5.80017 5.90664 6.05710 6.10958 6.13249 6.30948 6.42995 6.49545 6.51694 6.71492 6.97217 7.13106 7.25529 7.31649 7.53097 7.64014 8.31345 8.57769 9.08642 9.23370 9.69132 10.36029 10.99322 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020621 B = 0.006103 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.511476 B = 4586.926535 C = 5747.850576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.633 5.633 3 C 0.099 3.901 4 C 0.237 3.763 5 C -0.256 4.256 6 C 0.126 3.874 7 N -0.494 5.494 8 C 0.152 3.848 9 C 0.509 3.491 10 O -0.530 6.530 11 N -0.398 5.398 12 C -0.343 4.343 13 H 0.082 0.918 14 C 0.070 3.930 15 N -0.819 5.819 16 Si 0.915 3.085 17 H -0.286 1.286 18 H -0.277 1.277 19 H -0.273 1.273 20 C 0.099 3.901 21 C -0.193 4.193 22 C -0.197 4.197 23 C -0.201 4.201 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.124 0.876 31 H 0.150 0.850 32 H 0.265 0.735 33 H 0.134 0.866 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.390 12.872 1.647 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.346 5.346 3 C -0.045 4.045 4 C 0.128 3.872 5 C -0.282 4.282 6 C -0.032 4.032 7 N -0.210 5.210 8 C 0.014 3.986 9 C 0.296 3.704 10 O -0.408 6.408 11 N -0.116 5.116 12 C -0.470 4.470 13 H 0.099 0.901 14 C -0.142 4.142 15 N -0.451 5.451 16 Si 0.742 3.258 17 H -0.211 1.211 18 H -0.203 1.203 19 H -0.199 1.199 20 C -0.007 4.007 21 C -0.231 4.231 22 C -0.236 4.236 23 C -0.227 4.227 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.142 0.858 31 H 0.167 0.833 32 H 0.076 0.924 33 H 0.151 0.849 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.866 12.280 1.593 13.702 hybrid contribution -0.883 0.305 0.142 0.945 sum 4.983 12.585 1.735 13.646 Atomic orbital electron populations 1.21714 0.79177 1.02966 1.01414 1.46184 1.05205 1.02960 1.80243 1.21569 0.96936 0.84810 1.01136 1.17935 0.91314 0.85749 0.92190 1.21544 0.92484 0.99895 1.14237 1.22545 0.99856 0.87379 0.93458 1.68245 1.08305 1.28400 1.16007 1.21767 0.89069 0.95103 0.92619 1.17461 0.86674 0.82053 0.84211 1.90615 1.12760 1.85360 1.52018 1.42590 1.04137 1.04713 1.60133 1.18952 1.05021 0.92105 1.30945 0.90068 1.25319 0.98102 0.96822 0.93926 1.69825 1.23396 1.35846 1.16063 0.86240 0.79710 0.80796 0.79102 1.21132 1.20250 1.19887 1.22211 0.82312 0.96099 1.00102 1.23193 1.02607 0.98161 0.99144 1.23099 1.01188 1.05550 0.93715 1.21585 1.01703 0.90327 1.09089 0.93256 0.91652 0.90643 0.92856 0.91017 0.92853 0.85848 0.83318 0.92444 0.84866 0.88095 0.90158 0.90068 0.89911 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.05 10.19 59.84 0.61 1.66 16 2 N -0.63 -8.30 3.40 -187.38 -0.64 -8.94 16 3 C 0.10 0.91 9.43 59.85 0.56 1.47 16 4 C 0.24 3.88 6.57 -83.63 -0.55 3.33 16 5 C -0.26 -3.74 9.39 -39.13 -0.37 -4.10 16 6 C 0.13 1.99 11.17 -17.63 -0.20 1.79 16 7 N -0.49 -9.84 6.17 -9.90 -0.06 -9.90 16 8 C 0.15 3.46 6.62 -83.06 -0.55 2.91 16 9 C 0.51 14.00 7.06 -12.25 -0.09 13.91 16 10 O -0.53 -16.21 13.82 5.31 0.07 -16.13 16 11 N -0.40 -10.71 2.82 -108.74 -0.31 -11.02 16 12 C -0.34 -9.69 7.89 -15.02 -0.12 -9.81 16 13 H 0.08 2.21 7.33 -52.49 -0.38 1.82 16 14 C 0.07 2.01 4.41 -17.45 -0.08 1.93 16 15 N -0.82 -24.72 11.56 55.50 0.64 -24.08 16 16 Si 0.91 22.10 29.59 -169.99 -5.03 17.07 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.10 2.22 4.91 -67.93 -0.33 1.89 16 21 C -0.19 -3.87 9.81 -26.69 -0.26 -4.13 16 22 C -0.20 -3.82 10.35 -26.70 -0.28 -4.09 16 23 C -0.20 -4.06 8.78 -38.81 -0.34 -4.40 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 26 H 0.07 1.00 6.26 -51.93 -0.32 0.68 16 27 H 0.05 0.46 7.99 -51.93 -0.41 0.05 16 28 H 0.07 0.50 7.79 -51.93 -0.40 0.10 16 29 H 0.05 0.46 7.99 -51.93 -0.41 0.04 16 30 H 0.12 1.41 6.88 -52.49 -0.36 1.05 16 31 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.27 7.61 8.31 -40.82 -0.34 7.28 16 33 H 0.13 2.93 5.71 -51.93 -0.30 2.64 16 34 H 0.10 2.18 6.77 -51.93 -0.35 1.83 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.14 2.89 5.87 -52.48 -0.31 2.59 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -34.19 314.70 -7.48 -41.67 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.92 Total: 4.22 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -1.98 Total: 2.35 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.36 Total: -53.93 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.07 Total: -16.13 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.19 -7.48 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275822960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.366 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds