Wall clock time and date at job start Mon Mar 30 2020 02:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46508 * 120.00010 * 2 1 4 4 C 1.39193 * 120.00422 * 180.02562 * 2 1 3 5 5 C 1.39450 * 120.83111 * 180.02562 * 4 2 1 6 6 C 1.38228 * 119.28060 * 179.97438 * 5 4 2 7 7 N 1.31656 * 121.00064 * 359.74217 * 6 5 4 8 8 C 1.32893 * 121.81547 * 0.53128 * 7 6 5 9 9 C 1.48028 * 119.69360 * 179.74790 * 8 7 6 10 10 O 1.21565 * 119.99193 * 174.20675 * 9 8 7 11 11 N 1.34777 * 120.00321 * 354.20490 * 9 8 7 12 12 C 1.36791 * 119.99878 * 174.05810 * 11 9 8 13 13 H 1.08001 * 119.99494 * 225.09932 * 12 11 9 14 14 C 1.39103 * 119.99942 * 45.10170 * 12 11 9 15 15 N 1.31330 * 119.99958 * 17.56866 * 14 12 11 16 16 Si 1.86794 * 119.99891 * 197.56839 * 14 12 11 17 17 H 1.48503 * 109.47210 * 180.02562 * 16 14 12 18 18 H 1.48509 * 109.47155 * 299.99925 * 16 14 12 19 19 H 1.48496 * 109.47277 * 59.99993 * 16 14 12 20 20 C 1.46501 * 119.99702 * 354.06045 * 11 9 8 21 21 C 1.53003 * 117.49671 * 184.07628 * 20 11 9 22 22 C 1.52997 * 117.49699 * 115.41935 * 20 11 9 23 23 C 1.39130 * 120.60395 * 359.47011 * 8 7 6 24 24 H 1.09000 * 109.47079 * 270.00257 * 1 2 3 25 25 H 1.08997 * 109.47619 * 29.99539 * 1 2 3 26 26 H 1.09000 * 109.47165 * 150.00099 * 1 2 3 27 27 H 1.09000 * 109.46984 * 240.00296 * 3 2 1 28 28 H 1.09002 * 109.46840 * 359.97438 * 3 2 1 29 29 H 1.08991 * 109.47094 * 120.00141 * 3 2 1 30 30 H 1.07996 * 120.35869 * 359.96059 * 5 4 2 31 31 H 1.07996 * 119.49521 * 180.02562 * 6 5 4 32 32 H 0.96994 * 119.99494 * 174.96674 * 15 14 12 33 33 H 1.08990 * 115.55189 * 329.74736 * 20 11 9 34 34 H 1.08999 * 117.49385 * 0.02562 * 21 20 11 35 35 H 1.08997 * 117.49756 * 145.01782 * 21 20 11 36 36 H 1.08998 * 117.49933 * 214.97933 * 22 20 11 37 37 H 1.09000 * 117.49960 * 359.96978 * 22 20 11 38 38 H 1.08008 * 120.52467 * 180.23204 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1610 -1.2054 -0.0005 5 6 3.5553 -1.2255 0.0000 6 6 4.2139 -2.4408 0.0000 7 7 3.5448 -3.5747 0.0045 8 6 2.2162 -3.6042 -0.0011 9 6 1.5117 -4.9060 -0.0013 10 8 0.3007 -4.9416 0.0999 11 7 2.2126 -6.0517 -0.1135 12 6 1.5772 -7.2569 0.0081 13 1 2.0140 -8.0391 0.6114 14 6 0.3687 -7.4751 -0.6452 15 7 0.0054 -6.6902 -1.6335 16 14 -0.7375 -8.8845 -0.1167 17 1 -1.9563 -8.9020 -0.9650 18 1 -0.0095 -10.1697 -0.2704 19 1 -1.1260 -8.7026 1.3050 20 6 3.6550 -6.0061 -0.3658 21 6 4.3775 -7.3380 -0.5781 22 6 4.5801 -6.5557 0.7219 23 6 1.4815 -2.4227 -0.0011 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3633 -0.8900 -0.5138 27 1 2.8241 1.3265 -0.8900 28 1 1.4891 2.0973 -0.0005 29 1 2.8241 1.3265 0.8899 30 1 4.1145 -0.3016 0.0002 31 1 5.2937 -2.4605 0.0008 32 1 -0.8006 -6.8853 -2.1365 33 1 4.0054 -5.1468 -0.9375 34 1 3.7794 -8.2480 -0.5305 35 1 5.2033 -7.3548 -1.2893 36 1 5.5392 -6.0582 0.8655 37 1 4.1155 -6.9507 1.6254 38 1 0.4017 -2.4481 -0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275822960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:43 Heat of formation + Delta-G solvation = 51.214512 kcal Electronic energy + Delta-G solvation = -21534.897098 eV Core-core repulsion = 18379.103814 eV Total energy + Delta-G solvation = -3155.793284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42364 -39.87888 -37.73570 -37.66769 -34.79709 -33.02361 -32.12667 -31.97384 -29.23023 -27.29433 -26.32867 -24.50310 -23.15879 -22.93603 -22.27082 -21.23890 -19.03340 -17.92748 -17.65122 -17.26518 -16.56757 -16.21084 -16.09075 -16.00034 -15.53879 -15.24943 -15.06701 -14.75428 -14.49018 -14.06657 -13.71484 -13.49345 -13.18604 -13.09744 -12.87521 -12.81608 -12.74290 -12.24513 -12.16827 -12.07856 -11.56268 -11.47555 -11.17256 -10.77001 -10.38186 -9.97177 -9.67972 -8.94296 -8.57612 -8.19396 -6.00516 0.01775 0.62383 1.36463 1.45674 1.49513 2.09519 2.27954 2.40309 2.99617 3.16071 3.21427 3.49364 3.67861 3.89279 4.02757 4.18696 4.31315 4.35144 4.43485 4.49292 4.52184 4.59203 4.71299 4.75677 4.80327 4.82889 4.92320 4.97258 5.07078 5.11551 5.15599 5.45335 5.47192 5.55870 5.79720 6.19592 6.21134 6.36500 6.98364 7.06848 7.30741 7.65419 8.32756 8.87249 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020621 B = 0.006103 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.511476 B = 4586.926535 C = 5747.850576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.631 5.631 3 C 0.090 3.910 4 C 0.239 3.761 5 C -0.235 4.235 6 C 0.126 3.874 7 N -0.509 5.509 8 C 0.120 3.880 9 C 0.493 3.507 10 O -0.582 6.582 11 N -0.414 5.414 12 C -0.362 4.362 13 H 0.083 0.917 14 C 0.019 3.981 15 N -0.862 5.862 16 Si 0.978 3.022 17 H -0.284 1.284 18 H -0.253 1.253 19 H -0.280 1.280 20 C 0.068 3.932 21 C -0.185 4.185 22 C -0.170 4.170 23 C -0.219 4.219 24 H 0.053 0.947 25 H 0.100 0.900 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.169 0.831 31 H 0.196 0.804 32 H 0.261 0.739 33 H 0.140 0.860 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.172 15.210 2.042 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.342 5.342 3 C -0.051 4.051 4 C 0.127 3.873 5 C -0.260 4.260 6 C -0.032 4.032 7 N -0.225 5.225 8 C -0.016 4.016 9 C 0.282 3.718 10 O -0.464 6.464 11 N -0.131 5.131 12 C -0.489 4.489 13 H 0.100 0.900 14 C -0.188 4.188 15 N -0.497 5.497 16 Si 0.802 3.198 17 H -0.209 1.209 18 H -0.177 1.177 19 H -0.205 1.205 20 C -0.036 4.036 21 C -0.223 4.223 22 C -0.208 4.208 23 C -0.246 4.246 24 H 0.071 0.929 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.187 0.813 31 H 0.213 0.787 32 H 0.071 0.929 33 H 0.157 0.843 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.085 0.915 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.693 14.635 1.990 17.138 hybrid contribution -1.634 -0.157 0.064 1.643 sum 7.059 14.478 2.054 16.237 Atomic orbital electron populations 1.21815 0.78834 1.03288 1.01787 1.46528 1.05848 1.03241 1.78621 1.21899 0.97732 0.83263 1.02239 1.18041 0.92330 0.85615 0.91314 1.21994 0.91538 1.01373 1.11086 1.23316 1.01719 0.86533 0.91660 1.68098 1.06682 1.30779 1.16913 1.21103 0.90612 0.93321 0.96531 1.18295 0.86620 0.84014 0.82870 1.90539 1.15036 1.86722 1.54122 1.42817 1.06020 1.04216 1.60085 1.19214 1.05823 0.92874 1.31011 0.89964 1.26221 0.99391 0.99477 0.93744 1.69958 1.23837 1.38152 1.17726 0.85268 0.77900 0.78722 0.77946 1.20946 1.17713 1.20540 1.22406 0.80439 0.97817 1.02975 1.23240 1.02619 0.96029 1.00420 1.23082 1.01385 1.04027 0.92331 1.21464 1.00740 0.91699 1.10667 0.92891 0.88181 0.93444 0.91626 0.88471 0.91575 0.81339 0.78746 0.92939 0.84284 0.90263 0.86848 0.86403 0.91530 0.86681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.90 10.19 127.77 1.30 3.20 16 2 N -0.63 -14.92 3.40 -746.73 -2.54 -17.46 16 3 C 0.09 1.22 9.43 127.77 1.21 2.43 16 4 C 0.24 7.40 6.57 38.55 0.25 7.66 16 5 C -0.23 -5.89 9.39 22.56 0.21 -5.68 16 6 C 0.13 3.52 11.17 84.72 0.95 4.46 16 7 N -0.51 -19.82 6.17 -185.24 -1.14 -20.96 16 8 C 0.12 5.70 6.62 41.80 0.28 5.97 16 9 C 0.49 28.83 7.06 86.84 0.61 29.44 16 10 O -0.58 -38.43 13.82 -3.92 -0.05 -38.49 16 11 N -0.41 -23.29 2.82 -616.20 -1.74 -25.03 16 12 C -0.36 -21.37 7.89 84.13 0.66 -20.71 16 13 H 0.08 4.66 7.33 -2.91 -0.02 4.64 16 14 C 0.02 1.13 4.41 84.98 0.37 1.50 16 15 N -0.86 -55.18 11.56 21.69 0.25 -54.93 16 16 Si 0.98 47.29 29.59 68.60 2.03 49.32 16 17 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 18 H -0.25 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 20 C 0.07 3.09 4.91 44.99 0.22 3.31 16 21 C -0.19 -7.26 9.81 30.62 0.30 -6.96 16 22 C -0.17 -6.35 10.35 30.62 0.32 -6.03 16 23 C -0.22 -9.18 8.78 22.77 0.20 -8.98 16 24 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.10 1.51 7.92 -2.39 -0.02 1.49 16 26 H 0.05 1.33 6.26 -2.39 -0.01 1.31 16 27 H 0.07 0.78 7.99 -2.39 -0.02 0.77 16 28 H 0.10 0.87 7.79 -2.39 -0.02 0.85 16 29 H 0.07 0.78 7.99 -2.39 -0.02 0.76 16 30 H 0.17 2.73 6.88 -2.91 -0.02 2.71 16 31 H 0.20 3.57 8.06 -2.91 -0.02 3.55 16 32 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 33 H 0.14 6.09 5.71 -2.39 -0.01 6.07 16 34 H 0.08 3.45 6.77 -2.39 -0.02 3.44 16 35 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 36 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 37 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 38 H 0.12 5.25 5.87 -2.91 -0.02 5.23 16 Total: -1.00 -81.90 314.70 4.76 -77.13 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 1.07 Total: 20.81 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 6.88 Total: 9.62 kcal Atomic # 7 Polarization: -113.22 SS G_CDS: -5.17 Total: -118.39 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.05 Total: -38.49 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -81.90 4.76 -77.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275822960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.346 kcal (2) G-P(sol) polarization free energy of solvation -81.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds