Wall clock time and date at job start Mon Mar 30 2020 01:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47065 * 2 1 4 4 C 1.50704 * 109.47092 * 119.99882 * 2 1 3 5 5 H 1.07998 * 119.99694 * 120.00128 * 4 2 1 6 6 C 1.37879 * 119.99966 * 299.99666 * 4 2 1 7 7 N 1.31517 * 119.99736 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00155 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46720 * 89.99863 * 8 6 4 10 10 H 1.48500 * 109.47192 * 210.00341 * 8 6 4 11 11 H 1.48505 * 109.46910 * 330.00374 * 8 6 4 12 12 N 1.46497 * 109.46726 * 239.99648 * 2 1 3 13 13 C 1.34772 * 120.00214 * 85.00387 * 12 2 1 14 14 O 1.21589 * 119.99745 * 359.97438 * 13 12 2 15 15 N 1.34779 * 120.00548 * 179.97438 * 13 12 2 16 16 C 1.39398 * 119.99977 * 185.09500 * 15 13 12 17 17 C 1.39043 * 119.69188 * 174.88994 * 16 15 13 18 18 C 1.38351 * 119.09971 * 180.22421 * 17 16 15 19 19 C 1.50700 * 120.75586 * 179.80167 * 18 17 16 20 20 C 1.52999 * 117.49846 * 119.72001 * 19 18 17 21 21 C 1.52992 * 117.50354 * 188.34528 * 19 18 17 22 22 C 1.38846 * 118.49653 * 359.53562 * 18 17 16 23 23 C 1.38065 * 119.30750 * 0.24571 * 22 18 17 24 24 N 1.31942 * 120.85332 * 359.97438 * 23 22 18 25 25 H 1.09003 * 109.46773 * 300.00086 * 1 2 3 26 26 H 1.08997 * 109.47186 * 60.00528 * 1 2 3 27 27 H 1.09006 * 109.47198 * 180.02562 * 1 2 3 28 28 H 0.97007 * 119.99666 * 180.02562 * 7 6 4 29 29 H 0.97003 * 120.00199 * 264.99836 * 12 2 1 30 30 H 0.96997 * 119.99906 * 5.09518 * 15 13 12 31 31 H 1.08001 * 120.45398 * 0.02562 * 17 16 15 32 32 H 1.08998 * 115.55828 * 334.03856 * 19 18 17 33 33 H 1.08999 * 117.49880 * 0.02562 * 20 19 18 34 34 H 1.09003 * 117.50197 * 214.98259 * 20 19 18 35 35 H 1.08999 * 117.49989 * 145.02074 * 21 19 18 36 36 H 1.09004 * 117.51667 * 359.97438 * 21 19 18 37 37 H 1.07998 * 120.35032 * 180.22465 * 22 18 17 38 38 H 1.08002 * 119.57454 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9429 0.8298 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6297 -0.5458 4.4123 10 1 1.3431 -0.9490 5.1121 11 1 2.4858 -2.5661 3.7120 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0185 -2.3571 14 8 1.8575 1.1612 -2.4119 15 7 2.5967 -0.6537 -3.4575 16 6 2.8309 0.0636 -4.6296 17 6 3.3948 -0.5764 -5.7276 18 6 3.6262 0.1484 -6.8832 19 6 4.2398 -0.5066 -8.0938 20 6 3.4203 -0.5115 -9.3858 21 6 4.6431 0.3992 -9.2589 22 6 3.2753 1.4916 -6.9041 23 6 2.7148 2.0613 -5.7783 24 7 2.5098 1.3461 -4.6886 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1615 3.4844 29 1 2.2490 -1.6319 -1.1526 30 1 2.7573 -1.6100 -3.4338 31 1 3.6516 -1.6242 -5.6782 32 1 4.8659 -1.3755 -7.8917 33 1 2.4376 -0.0406 -9.3603 34 1 3.5074 -1.3837 -10.0338 35 1 5.5347 0.1262 -9.8234 36 1 4.4645 1.4690 -9.1503 37 1 3.4393 2.0847 -7.7916 38 1 2.4406 3.1059 -5.7897 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290190144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:52 Heat of formation + Delta-G solvation = 43.905040 kcal Electronic energy + Delta-G solvation = -20304.193804 eV Core-core repulsion = 17148.083557 eV Total energy + Delta-G solvation = -3156.110247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.64061 -39.06664 -37.37472 -35.06655 -34.11441 -32.34497 -31.87549 -30.03452 -28.35505 -25.22744 -24.74233 -23.44257 -22.57996 -22.03435 -20.32235 -19.67411 -18.27061 -17.48603 -16.49794 -16.13062 -15.59746 -15.22450 -15.11639 -14.80722 -14.25681 -14.01326 -13.72402 -13.50472 -13.17472 -12.44306 -12.35017 -11.90645 -11.81204 -11.66919 -11.31411 -11.05235 -10.98334 -10.78361 -10.72548 -10.35325 -10.23368 -10.18540 -9.71473 -9.26777 -9.01441 -8.70744 -8.51744 -8.14494 -7.75866 -6.09947 -4.19020 1.26127 1.34828 3.00632 3.26171 3.32717 3.34639 3.47948 3.83134 4.22710 4.25399 4.33442 4.53300 4.59731 4.65763 4.79435 5.02011 5.09725 5.18055 5.22657 5.29922 5.40231 5.52060 5.70348 5.77137 5.77862 5.94564 6.29330 6.48650 6.80062 6.95766 7.02889 7.13651 7.23707 7.52856 7.64316 7.81614 7.98185 8.18770 8.34255 8.77584 8.92722 9.34701 9.51004 10.96156 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046198 B = 0.003159 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.946063 B = 8862.299646 C = 9146.236242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.282 3.718 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.722 5.722 13 C 0.681 3.319 14 O -0.535 6.535 15 N -0.676 5.676 16 C 0.396 3.604 17 C -0.216 4.216 18 C 0.017 3.983 19 C -0.120 4.120 20 C -0.166 4.166 21 C -0.173 4.173 22 C -0.223 4.223 23 C 0.139 3.861 24 N -0.473 5.473 25 H 0.090 0.910 26 H 0.016 0.984 27 H 0.025 0.975 28 H 0.264 0.736 29 H 0.384 0.616 30 H 0.408 0.592 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.130 0.870 38 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.911 -4.536 -21.342 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.180 3.820 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.375 5.375 13 C 0.380 3.620 14 O -0.407 6.407 15 N -0.324 5.324 16 C 0.163 3.837 17 C -0.240 4.240 18 C 0.009 3.991 19 C -0.138 4.138 20 C -0.203 4.203 21 C -0.210 4.210 22 C -0.245 4.245 23 C -0.019 4.019 24 N -0.188 5.188 25 H 0.109 0.891 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.216 0.784 30 H 0.243 0.757 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.147 0.853 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.126 -2.927 -20.286 21.127 hybrid contribution 0.884 -1.866 0.203 2.074 sum 6.010 -4.792 -20.082 21.503 Atomic orbital electron populations 1.22104 0.98593 0.99031 1.00954 1.18658 0.90806 0.93752 0.78793 0.93291 1.21213 1.32434 1.13248 0.90277 0.92106 1.24886 0.94835 0.95002 0.99019 1.69914 1.35778 1.22458 1.23870 0.86434 0.78587 0.79779 0.82185 1.20579 1.21068 1.19887 1.45892 1.69210 1.13263 1.09130 1.16286 0.79553 0.85892 0.80261 1.91001 1.53133 1.13408 1.83143 1.43061 1.68599 1.11318 1.09459 1.18235 0.91171 0.88982 0.85319 1.21129 1.08170 1.01284 0.93426 1.19138 0.94053 0.93047 0.92903 1.21001 1.03585 1.01738 0.87476 1.23027 0.96478 1.02401 0.98402 1.23070 0.99162 0.97918 1.00870 1.21826 1.06377 0.95448 1.00840 1.22678 0.92528 0.99596 0.87122 1.67809 1.18786 1.05169 1.27017 0.89128 0.96536 0.95573 0.92563 0.78421 0.75660 0.85039 0.86639 0.88388 0.88324 0.88336 0.88096 0.85253 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.26 37.16 0.34 -3.44 16 2 C 0.28 7.35 2.56 -69.08 -0.18 7.17 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.53 -14.29 8.73 -34.44 -0.30 -14.60 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.20 11.32 55.43 0.63 -24.57 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.72 -15.49 5.07 -59.81 -0.30 -15.79 16 13 C 0.68 14.66 8.49 -86.92 -0.74 13.92 16 14 O -0.54 -13.92 14.27 5.29 0.08 -13.84 16 15 N -0.68 -11.08 5.40 -15.81 -0.09 -11.16 16 16 C 0.40 6.48 7.42 -154.72 -1.15 5.33 16 17 C -0.22 -2.68 9.67 -39.24 -0.38 -3.06 16 18 C 0.02 0.19 5.64 -104.36 -0.59 -0.40 16 19 C -0.12 -0.99 6.07 -91.78 -0.56 -1.55 16 20 C -0.17 -1.15 10.18 -26.73 -0.27 -1.42 16 21 C -0.17 -1.17 9.88 -26.74 -0.26 -1.43 16 22 C -0.22 -2.54 9.38 -39.42 -0.37 -2.91 16 23 C 0.14 1.99 11.17 -17.57 -0.20 1.79 16 24 N -0.47 -8.78 7.89 -12.37 -0.10 -8.88 16 25 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.38 6.93 8.56 -40.82 -0.35 6.58 16 30 H 0.41 4.88 8.72 -40.82 -0.36 4.53 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.66 6.25 -51.93 -0.32 0.34 16 37 H 0.13 1.12 6.16 -52.49 -0.32 0.79 16 38 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 322.90 15.07 4.87 4.87 Total: -1.00 -33.93 322.90 -9.66 -43.59 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -4.98 Total: 8.90 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -4.74 Total: 1.11 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 0.14 Total: -60.40 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.08 Total: -13.84 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.93 -9.66 -43.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290190144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.499 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds