Wall clock time and date at job start Mon Mar 30 2020 01:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47065 * 2 1 4 4 C 1.50704 * 109.47092 * 119.99882 * 2 1 3 5 5 H 1.07998 * 119.99694 * 120.00128 * 4 2 1 6 6 C 1.37879 * 119.99966 * 299.99666 * 4 2 1 7 7 N 1.31517 * 119.99736 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00155 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46720 * 89.99863 * 8 6 4 10 10 H 1.48500 * 109.47192 * 210.00341 * 8 6 4 11 11 H 1.48505 * 109.46910 * 330.00374 * 8 6 4 12 12 N 1.46497 * 109.46726 * 239.99648 * 2 1 3 13 13 C 1.34772 * 120.00214 * 85.00387 * 12 2 1 14 14 O 1.21589 * 119.99745 * 359.97438 * 13 12 2 15 15 N 1.34779 * 120.00548 * 179.97438 * 13 12 2 16 16 C 1.39398 * 119.99977 * 185.09500 * 15 13 12 17 17 C 1.39043 * 119.69188 * 174.88994 * 16 15 13 18 18 C 1.38351 * 119.09971 * 180.22421 * 17 16 15 19 19 C 1.50700 * 120.75586 * 179.80167 * 18 17 16 20 20 C 1.52999 * 117.49846 * 119.72001 * 19 18 17 21 21 C 1.52992 * 117.50354 * 188.34528 * 19 18 17 22 22 C 1.38846 * 118.49653 * 359.53562 * 18 17 16 23 23 C 1.38065 * 119.30750 * 0.24571 * 22 18 17 24 24 N 1.31942 * 120.85332 * 359.97438 * 23 22 18 25 25 H 1.09003 * 109.46773 * 300.00086 * 1 2 3 26 26 H 1.08997 * 109.47186 * 60.00528 * 1 2 3 27 27 H 1.09006 * 109.47198 * 180.02562 * 1 2 3 28 28 H 0.97007 * 119.99666 * 180.02562 * 7 6 4 29 29 H 0.97003 * 120.00199 * 264.99836 * 12 2 1 30 30 H 0.96997 * 119.99906 * 5.09518 * 15 13 12 31 31 H 1.08001 * 120.45398 * 0.02562 * 17 16 15 32 32 H 1.08998 * 115.55828 * 334.03856 * 19 18 17 33 33 H 1.08999 * 117.49880 * 0.02562 * 20 19 18 34 34 H 1.09003 * 117.50197 * 214.98259 * 20 19 18 35 35 H 1.08999 * 117.49989 * 145.02074 * 21 19 18 36 36 H 1.09004 * 117.51667 * 359.97438 * 21 19 18 37 37 H 1.07998 * 120.35032 * 180.22465 * 22 18 17 38 38 H 1.08002 * 119.57454 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9429 0.8298 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6297 -0.5458 4.4123 10 1 1.3431 -0.9490 5.1121 11 1 2.4858 -2.5661 3.7120 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0185 -2.3571 14 8 1.8575 1.1612 -2.4119 15 7 2.5967 -0.6537 -3.4575 16 6 2.8309 0.0636 -4.6296 17 6 3.3948 -0.5764 -5.7276 18 6 3.6262 0.1484 -6.8832 19 6 4.2398 -0.5066 -8.0938 20 6 3.4203 -0.5115 -9.3858 21 6 4.6431 0.3992 -9.2589 22 6 3.2753 1.4916 -6.9041 23 6 2.7148 2.0613 -5.7783 24 7 2.5098 1.3461 -4.6886 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1615 3.4844 29 1 2.2490 -1.6319 -1.1526 30 1 2.7573 -1.6100 -3.4338 31 1 3.6516 -1.6242 -5.6782 32 1 4.8659 -1.3755 -7.8917 33 1 2.4376 -0.0406 -9.3603 34 1 3.5074 -1.3837 -10.0338 35 1 5.5347 0.1262 -9.8234 36 1 4.4645 1.4690 -9.1503 37 1 3.4393 2.0847 -7.7916 38 1 2.4406 3.1059 -5.7897 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290190144.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:52 Heat of formation + Delta-G solvation = 21.666630 kcal Electronic energy + Delta-G solvation = -20305.158134 eV Core-core repulsion = 17148.083557 eV Total energy + Delta-G solvation = -3157.074576 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.84397 -40.48261 -38.20274 -36.82419 -35.68769 -34.29005 -32.85451 -31.49331 -30.03009 -27.33959 -25.75508 -24.48892 -23.51583 -23.11851 -21.84571 -21.09613 -19.90772 -18.65012 -17.98823 -17.30845 -16.94899 -16.72701 -16.47096 -16.13986 -15.62331 -15.13438 -15.07910 -14.71597 -14.65773 -14.36722 -13.75154 -13.24218 -12.97385 -12.91546 -12.76738 -12.57723 -12.36552 -12.26125 -12.12472 -12.04334 -11.60947 -11.34200 -11.27671 -11.10727 -10.60519 -10.14251 -10.00520 -9.81698 -9.15447 -8.17096 -6.34832 0.20634 0.36163 1.45013 1.46663 1.56615 1.64461 2.23812 2.42039 2.84138 3.13166 3.18833 3.26601 3.48396 3.80423 3.94947 4.06886 4.09747 4.21542 4.24297 4.51161 4.72718 4.79998 4.83208 4.88318 4.93010 5.07794 5.09973 5.13335 5.29225 5.34692 5.38061 5.48942 5.59006 5.65767 5.79979 5.93119 6.08787 6.13671 6.73057 7.02180 7.33230 7.43354 7.76872 8.89738 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.046198 B = 0.003159 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.946063 B = 8862.299646 C = 9146.236242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.290 3.710 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.258 1.258 12 N -0.716 5.716 13 C 0.682 3.318 14 O -0.588 6.588 15 N -0.661 5.661 16 C 0.359 3.641 17 C -0.200 4.200 18 C 0.016 3.984 19 C -0.133 4.133 20 C -0.160 4.160 21 C -0.167 4.167 22 C -0.205 4.205 23 C 0.115 3.885 24 N -0.533 5.533 25 H 0.068 0.932 26 H 0.007 0.993 27 H 0.042 0.958 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.429 0.571 31 H 0.164 0.836 32 H 0.131 0.869 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.161 0.839 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.490 -6.904 -23.287 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.187 3.813 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.182 1.182 12 N -0.370 5.370 13 C 0.381 3.619 14 O -0.463 6.463 15 N -0.311 5.311 16 C 0.128 3.872 17 C -0.224 4.224 18 C 0.008 3.992 19 C -0.151 4.151 20 C -0.197 4.197 21 C -0.203 4.203 22 C -0.226 4.226 23 C -0.042 4.042 24 N -0.248 5.248 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.238 0.762 30 H 0.268 0.732 31 H 0.182 0.818 32 H 0.148 0.852 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.178 0.822 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.736 -5.354 -22.306 23.908 hybrid contribution 0.427 -1.066 0.609 1.300 sum 7.163 -6.421 -21.697 23.734 Atomic orbital electron populations 1.21918 0.98465 0.99456 0.99394 1.18224 0.90847 0.91553 0.80712 0.98664 1.21535 1.32651 1.13664 0.90578 0.90622 1.25843 0.94850 0.95627 1.02413 1.70072 1.36941 1.24011 1.24662 0.85285 0.77683 0.79195 0.77786 1.20440 1.20915 1.18167 1.45470 1.69351 1.13958 1.08210 1.16413 0.79078 0.85304 0.81096 1.90962 1.55291 1.15859 1.84213 1.42620 1.68028 1.12197 1.08255 1.18545 0.93511 0.89041 0.86125 1.21407 1.06143 1.02677 0.92178 1.19571 0.93044 0.92926 0.93670 1.21068 1.04668 1.02759 0.86612 1.23106 0.96234 1.03070 0.97309 1.23197 0.99750 0.97834 0.99542 1.22133 1.03886 0.95978 1.00584 1.22956 0.93760 1.00157 0.87374 1.67608 1.20739 1.06954 1.29527 0.91362 0.97346 0.93926 0.92511 0.76209 0.73179 0.81833 0.85153 0.89036 0.86639 0.86684 0.87988 0.82205 0.81805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.06 9.26 71.98 0.67 -6.39 16 2 C 0.29 15.68 2.56 44.25 0.11 15.79 16 3 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 4 C -0.55 -29.42 8.73 25.60 0.22 -29.19 16 5 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -53.78 11.32 21.45 0.24 -53.54 16 8 Si 0.98 42.39 29.54 68.60 2.03 44.42 16 9 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 12 N -0.72 -31.21 5.07 -461.41 -2.34 -33.55 16 13 C 0.68 30.30 8.49 179.05 1.52 31.82 16 14 O -0.59 -32.34 14.27 -4.00 -0.06 -32.40 16 15 N -0.66 -21.64 5.40 -322.20 -1.74 -23.38 16 16 C 0.36 11.76 7.42 132.92 0.99 12.74 16 17 C -0.20 -4.57 9.67 22.49 0.22 -4.36 16 18 C 0.02 0.32 5.64 -19.69 -0.11 0.21 16 19 C -0.13 -1.70 6.07 -11.54 -0.07 -1.77 16 20 C -0.16 -1.63 10.18 30.59 0.31 -1.31 16 21 C -0.17 -1.59 9.88 30.59 0.30 -1.29 16 22 C -0.20 -4.31 9.38 22.37 0.21 -4.10 16 23 C 0.11 3.32 11.17 84.64 0.95 4.26 16 24 N -0.53 -20.48 7.89 -193.05 -1.52 -22.00 16 25 H 0.07 3.92 6.07 -2.39 -0.01 3.90 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.04 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.27 14.67 8.31 -92.70 -0.77 13.90 16 29 H 0.40 14.27 8.56 -92.71 -0.79 13.48 16 30 H 0.43 9.73 8.72 -92.71 -0.81 8.92 16 31 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.11 0.76 8.14 -2.39 -0.02 0.75 16 36 H 0.10 0.95 6.25 -2.39 -0.01 0.94 16 37 H 0.16 2.30 6.16 -2.91 -0.02 2.29 16 38 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -77.54 322.90 1.87 -75.66 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.50 Total: 27.26 kcal Atomic # 6 Polarization: 11.77 SS G_CDS: 5.76 Total: 17.53 kcal Atomic # 7 Polarization: -127.11 SS G_CDS: -5.36 Total: -132.47 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.06 Total: -32.40 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -77.54 1.87 -75.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290190144.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.330 kcal (2) G-P(sol) polarization free energy of solvation -77.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds