Wall clock time and date at job start Mon Mar 30 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 119.99773 * 2 1 4 4 N 1.46495 * 109.47068 * 126.15126 * 3 2 1 5 5 C 1.46494 * 120.00356 * 277.22575 * 4 3 2 6 6 C 1.50696 * 109.47340 * 270.00283 * 5 4 3 7 7 H 1.08005 * 120.00029 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00192 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99724 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00285 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47086 * 89.99729 * 10 8 6 12 12 H 1.48493 * 109.47561 * 210.00137 * 10 8 6 13 13 H 1.48503 * 109.47196 * 330.00186 * 10 8 6 14 14 C 1.34781 * 119.99855 * 97.22822 * 4 3 2 15 15 O 1.21594 * 120.00279 * 185.57173 * 14 4 3 16 16 C 1.47548 * 119.99975 * 5.57417 * 14 4 3 17 17 C 1.40345 * 120.47432 * 131.49458 * 16 14 4 18 18 C 1.36863 * 118.49059 * 179.74596 * 17 16 14 19 19 C 1.39393 * 119.37765 * 0.51960 * 18 17 16 20 20 N 1.38454 * 119.53788 * 179.74019 * 19 18 17 21 21 C 1.46500 * 120.00238 * 359.45961 * 20 19 18 22 22 N 1.32601 * 120.92163 * 359.47587 * 19 18 17 23 23 C 1.31678 * 121.64066 * 0.27064 * 22 19 18 24 24 H 1.08002 * 119.99935 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00905 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00332 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46781 * 6.15439 * 3 2 1 28 28 H 1.08997 * 109.47053 * 246.15553 * 3 2 1 29 29 H 1.09004 * 109.47279 * 30.00124 * 5 4 3 30 30 H 1.08997 * 109.47495 * 149.99877 * 5 4 3 31 31 H 0.97006 * 119.99437 * 180.02562 * 9 8 6 32 32 H 1.07998 * 120.75368 * 0.03310 * 17 16 14 33 33 H 1.08000 * 120.30977 * 180.26143 * 18 17 16 34 34 H 0.96999 * 119.99952 * 179.73402 * 20 19 18 35 35 H 1.08999 * 109.47453 * 300.27236 * 21 20 19 36 36 H 1.09007 * 109.46568 * 60.27163 * 21 20 19 37 37 H 1.09001 * 109.47087 * 180.26958 * 21 20 19 38 38 H 1.07997 * 119.74077 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0132 1.3207 1.1152 5 6 2.5600 1.6905 2.4583 6 6 2.7039 3.1790 2.6449 7 1 3.0943 3.7885 1.8434 8 6 2.3371 3.7628 3.8390 9 7 1.8621 3.0205 4.8152 10 14 2.5161 5.6077 4.0706 11 1 1.2657 6.2841 3.6415 12 1 2.7730 5.9042 5.5028 13 1 3.6521 6.1015 3.2514 14 6 4.3041 0.9947 0.9056 15 8 5.0699 0.9088 1.8461 16 6 4.7879 0.7421 -0.4652 17 6 5.9631 1.3531 -0.9291 18 6 6.3776 1.0861 -2.2058 19 6 5.6213 0.2309 -3.0055 20 7 6.0347 -0.0373 -4.2994 21 6 7.2528 0.5855 -4.8232 22 7 4.5143 -0.3335 -2.5427 23 6 4.0832 -0.1074 -1.3192 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5402 0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3601 2.1306 0.1102 28 1 2.6048 1.4121 -0.9399 29 1 1.5140 1.4087 2.5793 30 1 3.1645 1.1710 3.2017 31 1 1.6037 3.4313 5.6552 32 1 6.5300 2.0153 -0.2915 33 1 7.2800 1.5371 -2.5914 34 1 5.5155 -0.6344 -4.8605 35 1 7.1470 1.6700 -4.7962 36 1 8.1047 0.2882 -4.2115 37 1 7.4133 0.2616 -5.8516 38 1 3.1776 -0.5838 -0.9737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293968075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:36 Heat of formation + Delta-G solvation = 39.670539 kcal Electronic energy + Delta-G solvation = -20915.408188 eV Core-core repulsion = 17759.114320 eV Total energy + Delta-G solvation = -3156.293868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.49110 -38.65749 -35.84536 -35.68119 -33.18313 -32.43370 -32.04439 -30.31077 -27.60439 -26.57020 -25.44691 -23.63593 -23.24778 -21.96901 -20.10159 -18.81201 -17.89873 -16.96753 -16.67543 -16.43752 -15.49499 -14.96004 -14.89983 -14.63804 -14.43725 -14.12649 -13.88868 -13.28977 -13.21955 -12.99902 -12.69500 -12.40304 -12.12945 -11.98500 -11.61967 -11.24506 -11.06083 -10.85114 -10.59434 -10.30867 -10.15887 -9.74779 -9.63947 -9.60626 -9.14705 -8.88333 -8.41499 -7.78229 -7.63407 -6.02285 -4.07058 1.19569 1.44528 2.47580 3.01040 3.31254 3.37410 3.39856 3.45698 3.90047 4.17306 4.46300 4.59758 4.83352 4.92281 5.10716 5.12918 5.13385 5.29066 5.31542 5.34500 5.36702 5.43871 5.66402 5.79626 6.04974 6.06330 6.23648 6.28441 6.48999 6.81611 6.88382 6.94410 7.13475 7.36444 7.48683 7.56943 7.94493 8.10456 8.25654 8.41584 8.90987 9.08835 9.57826 11.05794 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.004827 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.308668 B = 5798.987367 C = 6580.421955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.174 4.174 3 C 0.130 3.870 4 N -0.586 5.586 5 C 0.247 3.753 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.558 3.442 15 O -0.537 6.537 16 C -0.227 4.227 17 C 0.012 3.988 18 C -0.242 4.242 19 C 0.404 3.596 20 N -0.729 5.729 21 C 0.095 3.905 22 N -0.547 5.547 23 C 0.168 3.832 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.139 0.861 33 H 0.133 0.867 34 H 0.405 0.595 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.784 -5.493 -18.864 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.193 4.193 3 C 0.006 3.994 4 N -0.316 5.316 5 C 0.128 3.872 6 C -0.567 4.567 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.344 3.656 15 O -0.415 6.415 16 C -0.235 4.235 17 C -0.014 4.014 18 C -0.267 4.267 19 C 0.168 3.832 20 N -0.361 5.361 21 C -0.050 4.050 22 N -0.264 5.264 23 C 0.010 3.990 24 H 0.114 0.886 25 H 0.118 0.882 26 H 0.126 0.874 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.240 0.760 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.851 -5.949 -18.738 20.250 hybrid contribution 0.277 1.354 0.496 1.468 sum 5.128 -4.596 -18.243 19.499 Atomic orbital electron populations 1.23819 0.95730 1.01875 0.99814 1.23420 0.96488 0.98785 1.00607 1.20726 0.92811 0.95392 0.90486 1.48142 1.06918 1.65187 1.11386 1.19303 0.95515 0.95570 0.76842 1.21446 1.42944 0.92593 0.99680 0.92433 1.24926 0.95110 0.98380 0.95611 1.69940 1.43244 1.35403 1.04648 0.86508 0.78364 0.85210 0.77402 1.20652 1.21090 1.19912 1.17918 0.82640 0.77713 0.87286 1.90757 1.55077 1.52196 1.43484 1.20904 0.99594 1.05648 0.97345 1.21101 0.92416 0.93907 0.93997 1.21033 1.03857 1.05988 0.95830 1.18491 0.89301 0.89508 0.85856 1.44115 1.28342 1.52388 1.11269 1.21607 0.86200 0.98111 0.99053 1.67229 1.14798 1.27787 1.16592 1.23124 0.97011 0.92066 0.86812 0.88603 0.88187 0.87449 0.89566 0.90299 0.94733 0.93615 0.92727 0.84301 0.84923 0.76011 0.92482 0.92500 0.90409 0.81529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 14.32 29.02 0.42 -1.91 16 2 C -0.17 -2.57 8.56 -36.02 -0.31 -2.88 16 3 C 0.13 2.23 5.34 -5.20 -0.03 2.20 16 4 N -0.59 -12.78 2.45 -177.67 -0.43 -13.21 16 5 C 0.25 6.52 5.21 -5.20 -0.03 6.49 16 6 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 7 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 10 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.56 12.28 7.25 -12.46 -0.09 12.19 16 15 O -0.54 -14.05 16.59 5.28 0.09 -13.96 16 16 C -0.23 -4.00 4.98 -104.82 -0.52 -4.52 16 17 C 0.01 0.19 9.82 -39.29 -0.39 -0.20 16 18 C -0.24 -3.12 9.25 -39.65 -0.37 -3.48 16 19 C 0.40 5.25 7.64 -155.28 -1.19 4.06 16 20 N -0.73 -6.81 5.86 -67.24 -0.39 -7.20 16 21 C 0.10 0.57 9.90 59.85 0.59 1.17 16 22 N -0.55 -7.98 10.38 -12.14 -0.13 -8.11 16 23 C 0.17 2.60 8.66 -17.12 -0.15 2.45 16 24 H 0.10 1.09 8.06 -52.49 -0.42 0.67 16 25 H 0.10 1.31 7.85 -52.48 -0.41 0.89 16 26 H 0.11 1.49 6.51 -52.49 -0.34 1.15 16 27 H 0.09 1.52 7.78 -51.93 -0.40 1.11 16 28 H 0.08 1.24 5.27 -51.93 -0.27 0.97 16 29 H 0.03 0.93 8.07 -51.93 -0.42 0.51 16 30 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.14 2.12 8.06 -52.49 -0.42 1.69 16 33 H 0.13 1.32 6.66 -52.49 -0.35 0.97 16 34 H 0.41 3.31 8.95 -40.82 -0.37 2.94 16 35 H 0.06 0.34 7.92 -51.93 -0.41 -0.07 16 36 H 0.06 0.34 7.90 -51.92 -0.41 -0.08 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.17 2.40 4.13 -52.49 -0.22 2.18 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -34.13 323.95 -7.54 -41.67 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.80 Total: 3.07 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.47 Total: 1.90 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.22 Total: -54.42 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.09 Total: -13.96 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.13 -7.54 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293968075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.343 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds