Wall clock time and date at job start Mon Mar 30 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 119.99773 * 2 1 4 4 N 1.46495 * 109.47068 * 126.15126 * 3 2 1 5 5 C 1.46494 * 120.00356 * 277.22575 * 4 3 2 6 6 C 1.50696 * 109.47340 * 270.00283 * 5 4 3 7 7 H 1.08005 * 120.00029 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00192 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99724 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00285 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47086 * 89.99729 * 10 8 6 12 12 H 1.48493 * 109.47561 * 210.00137 * 10 8 6 13 13 H 1.48503 * 109.47196 * 330.00186 * 10 8 6 14 14 C 1.34781 * 119.99855 * 97.22822 * 4 3 2 15 15 O 1.21594 * 120.00279 * 185.57173 * 14 4 3 16 16 C 1.47548 * 119.99975 * 5.57417 * 14 4 3 17 17 C 1.40345 * 120.47432 * 131.49458 * 16 14 4 18 18 C 1.36863 * 118.49059 * 179.74596 * 17 16 14 19 19 C 1.39393 * 119.37765 * 0.51960 * 18 17 16 20 20 N 1.38454 * 119.53788 * 179.74019 * 19 18 17 21 21 C 1.46500 * 120.00238 * 359.45961 * 20 19 18 22 22 N 1.32601 * 120.92163 * 359.47587 * 19 18 17 23 23 C 1.31678 * 121.64066 * 0.27064 * 22 19 18 24 24 H 1.08002 * 119.99935 * 179.97438 * 1 2 3 25 25 H 1.08004 * 120.00905 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.00332 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46781 * 6.15439 * 3 2 1 28 28 H 1.08997 * 109.47053 * 246.15553 * 3 2 1 29 29 H 1.09004 * 109.47279 * 30.00124 * 5 4 3 30 30 H 1.08997 * 109.47495 * 149.99877 * 5 4 3 31 31 H 0.97006 * 119.99437 * 180.02562 * 9 8 6 32 32 H 1.07998 * 120.75368 * 0.03310 * 17 16 14 33 33 H 1.08000 * 120.30977 * 180.26143 * 18 17 16 34 34 H 0.96999 * 119.99952 * 179.73402 * 20 19 18 35 35 H 1.08999 * 109.47453 * 300.27236 * 21 20 19 36 36 H 1.09007 * 109.46568 * 60.27163 * 21 20 19 37 37 H 1.09001 * 109.47087 * 180.26958 * 21 20 19 38 38 H 1.07997 * 119.74077 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0132 1.3207 1.1152 5 6 2.5600 1.6905 2.4583 6 6 2.7039 3.1790 2.6449 7 1 3.0943 3.7885 1.8434 8 6 2.3371 3.7628 3.8390 9 7 1.8621 3.0205 4.8152 10 14 2.5161 5.6077 4.0706 11 1 1.2657 6.2841 3.6415 12 1 2.7730 5.9042 5.5028 13 1 3.6521 6.1015 3.2514 14 6 4.3041 0.9947 0.9056 15 8 5.0699 0.9088 1.8461 16 6 4.7879 0.7421 -0.4652 17 6 5.9631 1.3531 -0.9291 18 6 6.3776 1.0861 -2.2058 19 6 5.6213 0.2309 -3.0055 20 7 6.0347 -0.0373 -4.2994 21 6 7.2528 0.5855 -4.8232 22 7 4.5143 -0.3335 -2.5427 23 6 4.0832 -0.1074 -1.3192 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5402 0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3601 2.1306 0.1102 28 1 2.6048 1.4121 -0.9399 29 1 1.5140 1.4087 2.5793 30 1 3.1645 1.1710 3.2017 31 1 1.6037 3.4313 5.6552 32 1 6.5300 2.0153 -0.2915 33 1 7.2800 1.5371 -2.5914 34 1 5.5155 -0.6344 -4.8605 35 1 7.1470 1.6700 -4.7962 36 1 8.1047 0.2882 -4.2115 37 1 7.4133 0.2616 -5.8516 38 1 3.1776 -0.5838 -0.9737 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293968075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:36 Heat of formation + Delta-G solvation = 16.419088 kcal Electronic energy + Delta-G solvation = -20916.416447 eV Core-core repulsion = 17759.114320 eV Total energy + Delta-G solvation = -3157.302127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.74478 -40.16958 -37.34707 -36.73278 -35.11152 -33.73599 -33.54891 -31.55262 -29.37739 -27.53295 -26.90148 -25.23951 -24.49536 -23.36610 -21.40764 -20.28367 -18.91277 -18.63214 -18.16845 -18.06443 -17.12716 -16.33143 -16.19051 -15.98444 -15.61529 -15.37751 -15.15088 -14.69532 -14.33048 -14.22645 -14.11782 -13.98192 -13.39235 -13.30041 -12.97122 -12.90731 -12.89364 -12.56499 -12.25372 -12.21469 -11.68856 -11.33911 -10.98664 -10.83012 -10.63195 -10.42812 -10.30273 -9.51856 -8.72589 -8.21590 -6.36665 0.00795 0.30088 1.30862 1.37351 1.40286 1.50656 1.82181 2.18452 2.34700 2.47527 2.86428 3.08003 3.53298 3.66164 3.91381 4.00914 4.06940 4.17831 4.21940 4.36000 4.48513 4.67994 4.69377 4.81895 4.90404 4.97822 4.98402 5.04702 5.18774 5.27167 5.39377 5.50891 5.69015 5.75280 5.93308 5.99063 6.06544 6.50574 6.66544 6.73514 7.06745 7.25462 7.41205 8.85817 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020325 B = 0.004827 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.308668 B = 5798.987367 C = 6580.421955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.195 4.195 3 C 0.131 3.869 4 N -0.590 5.590 5 C 0.264 3.736 6 C -0.546 4.546 7 H 0.053 0.947 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.969 3.031 11 H -0.263 1.263 12 H -0.280 1.280 13 H -0.273 1.273 14 C 0.555 3.445 15 O -0.595 6.595 16 C -0.256 4.256 17 C 0.002 3.998 18 C -0.232 4.232 19 C 0.406 3.594 20 N -0.715 5.715 21 C 0.085 3.915 22 N -0.556 5.556 23 C 0.179 3.821 24 H 0.122 0.878 25 H 0.102 0.898 26 H 0.117 0.883 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.026 0.974 30 H 0.000 1.000 31 H 0.268 0.732 32 H 0.133 0.867 33 H 0.166 0.834 34 H 0.413 0.587 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -5.010 -21.896 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.214 4.214 3 C 0.009 3.991 4 N -0.318 5.318 5 C 0.143 3.857 6 C -0.585 4.585 7 H 0.071 0.929 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.793 3.207 11 H -0.188 1.188 12 H -0.205 1.205 13 H -0.197 1.197 14 C 0.344 3.656 15 O -0.477 6.477 16 C -0.264 4.264 17 C -0.024 4.024 18 C -0.256 4.256 19 C 0.168 3.832 20 N -0.345 5.345 21 C -0.058 4.058 22 N -0.274 5.274 23 C 0.021 3.979 24 H 0.140 0.860 25 H 0.120 0.880 26 H 0.134 0.866 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.044 0.956 30 H 0.018 0.982 31 H 0.077 0.923 32 H 0.151 0.849 33 H 0.184 0.816 34 H 0.249 0.751 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 5.082 -5.478 -21.870 23.111 hybrid contribution 0.240 1.132 1.269 1.718 sum 5.322 -4.345 -20.601 21.716 Atomic orbital electron populations 1.24080 0.95193 1.03221 0.96876 1.23298 0.97034 0.97814 1.03209 1.20888 0.92082 0.96722 0.89393 1.48106 1.08060 1.64799 1.10875 1.18745 0.93927 0.94381 0.78629 1.21696 1.43264 0.93477 1.00026 0.92880 1.25849 0.94425 1.03549 0.95099 1.70061 1.43786 1.37592 1.05170 0.85403 0.78907 0.79002 0.77428 1.18782 1.20525 1.19731 1.18606 0.81976 0.76309 0.88712 1.90701 1.56412 1.54833 1.45735 1.20523 1.01660 1.08943 0.95314 1.21167 0.91861 0.94100 0.95291 1.21255 1.04594 1.05366 0.94403 1.18839 0.88587 0.88591 0.87157 1.44384 1.28923 1.51496 1.09717 1.21933 0.84721 0.98453 1.00738 1.67328 1.15764 1.28451 1.15861 1.23108 0.96847 0.91149 0.86819 0.86037 0.88003 0.86573 0.90309 0.88683 0.95606 0.98201 0.92348 0.84879 0.81631 0.75121 0.91792 0.91856 0.87441 0.80910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 14.32 67.79 0.97 -2.95 16 2 C -0.19 -5.69 8.56 25.65 0.22 -5.47 16 3 C 0.13 4.59 5.34 85.63 0.46 5.05 16 4 N -0.59 -26.98 2.45 -834.27 -2.04 -29.02 16 5 C 0.26 14.79 5.21 85.63 0.45 15.24 16 6 C -0.55 -32.24 9.39 25.60 0.24 -32.00 16 7 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 8 C 0.01 0.58 5.46 84.66 0.46 1.04 16 9 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 10 Si 0.97 45.35 29.54 68.60 2.03 47.37 16 11 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 14 C 0.55 25.78 7.25 86.70 0.63 26.41 16 15 O -0.59 -33.33 16.59 -4.01 -0.07 -33.40 16 16 C -0.26 -9.21 4.98 -19.99 -0.10 -9.30 16 17 C 0.00 0.06 9.82 22.46 0.22 0.28 16 18 C -0.23 -5.44 9.25 22.23 0.21 -5.23 16 19 C 0.41 9.47 7.64 133.25 1.02 10.49 16 20 N -0.71 -10.72 5.86 -366.63 -2.15 -12.87 16 21 C 0.09 0.66 9.90 127.77 1.27 1.93 16 22 N -0.56 -15.22 10.38 -192.33 -2.00 -17.22 16 23 C 0.18 5.47 8.66 85.03 0.74 6.21 16 24 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 25 H 0.10 2.52 7.85 -2.91 -0.02 2.50 16 26 H 0.12 3.18 6.51 -2.91 -0.02 3.16 16 27 H 0.08 2.82 7.78 -2.38 -0.02 2.81 16 28 H 0.10 2.99 5.27 -2.39 -0.01 2.98 16 29 H 0.03 1.46 8.07 -2.38 -0.02 1.44 16 30 H 0.00 -0.01 7.35 -2.39 -0.02 -0.03 16 31 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 32 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.17 2.71 6.66 -2.91 -0.02 2.69 16 34 H 0.41 5.23 8.95 -92.71 -0.83 4.40 16 35 H 0.06 0.48 7.92 -2.39 -0.02 0.46 16 36 H 0.06 0.48 7.90 -2.38 -0.02 0.46 16 37 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.17 4.92 4.13 -2.91 -0.01 4.91 16 Total: -1.00 -77.54 323.95 3.08 -74.46 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.25 Total: 15.43 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.77 Total: 11.67 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -5.90 Total: -115.54 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.07 Total: -33.40 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -77.54 3.08 -74.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293968075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.882 kcal (2) G-P(sol) polarization free energy of solvation -77.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds