Wall clock time and date at job start Mon Mar 30 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36914 * 119.99583 * 2 1 4 4 H 1.07993 * 120.00069 * 227.99231 * 3 2 1 5 5 C 1.39020 * 120.00122 * 47.72098 * 3 2 1 6 6 N 1.31388 * 119.99625 * 323.97101 * 5 3 2 7 7 Si 1.86790 * 120.00187 * 143.96993 * 5 3 2 8 8 H 1.48497 * 109.47527 * 89.99873 * 7 5 3 9 9 H 1.48506 * 109.47158 * 210.00192 * 7 5 3 10 10 H 1.48506 * 109.47177 * 329.99742 * 7 5 3 11 11 C 1.34773 * 120.00071 * 179.97438 * 2 1 3 12 12 O 1.21622 * 119.99837 * 164.71423 * 11 2 1 13 13 C 1.47440 * 119.99928 * 344.71915 * 11 2 1 14 14 C 1.40404 * 120.47492 * 206.19943 * 13 11 2 15 15 C 1.36852 * 118.48438 * 180.02562 * 14 13 11 16 16 C 1.39406 * 119.38358 * 0.02562 * 15 14 13 17 17 N 1.38473 * 119.53161 * 179.97438 * 16 15 14 18 18 C 1.48533 * 110.99980 * 62.60668 * 17 16 15 19 19 C 1.54929 * 103.22871 * 159.72153 * 18 17 16 20 20 C 1.54598 * 102.92315 * 322.58781 * 19 18 17 21 21 C 1.47902 * 111.00249 * 180.02562 * 17 16 15 22 22 N 1.32605 * 120.93959 * 0.02562 * 16 15 14 23 23 C 1.31679 * 121.63936 * 359.65534 * 22 16 15 24 24 H 1.09002 * 109.47350 * 355.13356 * 1 2 3 25 25 H 1.09000 * 109.46671 * 115.13656 * 1 2 3 26 26 H 1.09004 * 109.46756 * 235.13659 * 1 2 3 27 27 H 0.96999 * 119.99847 * 179.97438 * 6 5 3 28 28 H 1.07995 * 120.75901 * 359.97438 * 14 13 11 29 29 H 1.07994 * 120.30460 * 179.97438 * 15 14 13 30 30 H 1.09002 * 110.66776 * 278.15936 * 18 17 16 31 31 H 1.08998 * 110.66740 * 41.28238 * 18 17 16 32 32 H 1.08997 * 110.72751 * 204.22510 * 19 18 17 33 33 H 1.09008 * 110.87721 * 81.01355 * 19 18 17 34 34 H 1.09003 * 110.30595 * 263.04524 * 20 19 18 35 35 H 1.08998 * 110.31295 * 140.87433 * 20 19 18 36 36 H 1.09000 * 109.91560 * 333.51375 * 21 17 16 37 37 H 1.09001 * 109.91503 * 94.80534 * 21 17 16 38 38 H 1.08001 * 119.74317 * 180.31588 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1495 1.1858 0.0000 4 1 2.9616 1.3405 -0.6949 5 6 1.7956 2.1927 0.8908 6 7 0.5330 2.3806 1.2018 7 14 3.1150 3.2784 1.6454 8 1 3.3357 4.4641 0.7790 9 1 2.6782 3.7243 2.9929 10 1 4.3802 2.5099 1.7643 11 6 2.1389 -1.1672 0.0005 12 8 3.3229 -1.1859 -0.2772 13 6 1.4408 -2.4213 0.3376 14 6 2.1493 -3.5089 0.8729 15 6 1.4607 -4.6535 1.1705 16 6 0.0877 -4.7066 0.9351 17 7 -0.6120 -5.8634 1.2345 18 6 -0.5525 -6.1601 2.6887 19 6 -1.7595 -7.1066 2.9071 20 6 -2.8332 -6.5216 1.9611 21 6 -2.0474 -5.7134 0.9115 22 7 -0.5577 -3.6653 0.4276 23 6 0.0651 -2.5432 0.1329 24 1 -0.3634 1.0240 0.0872 25 1 -0.3633 -0.4365 -0.9304 26 1 -0.3633 -0.5875 0.8433 27 1 0.2860 3.0829 1.8236 28 1 3.2134 -3.4440 1.0451 29 1 1.9764 -5.5080 1.5830 30 1 0.3812 -6.6627 2.9410 31 1 -0.6690 -5.2471 3.2727 32 1 -2.0965 -7.0693 3.9430 33 1 -1.5088 -8.1281 2.6211 34 1 -3.5089 -5.8685 2.5136 35 1 -3.3914 -7.3245 1.4796 36 1 -2.3317 -4.6624 0.9631 37 1 -2.2467 -6.1062 -0.0855 38 1 -0.4917 -1.7123 -0.2745 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330460806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:14 Heat of formation + Delta-G solvation = 54.233321 kcal Electronic energy + Delta-G solvation = -21104.630627 eV Core-core repulsion = 17948.968248 eV Total energy + Delta-G solvation = -3155.662379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.64954 -38.92019 -37.43973 -34.87021 -32.88278 -32.26416 -31.74444 -29.10853 -29.01683 -26.60845 -25.02740 -23.37294 -23.02642 -21.28426 -20.68192 -19.58141 -17.53962 -17.11475 -16.75294 -16.03627 -15.61396 -14.84175 -14.73722 -14.34303 -14.12398 -13.92788 -13.66558 -13.33567 -12.90049 -12.80567 -12.50101 -12.24458 -12.08162 -11.79751 -11.56689 -11.47624 -11.31238 -11.25714 -10.77811 -10.70214 -10.39499 -10.24914 -9.76131 -9.52245 -9.14839 -8.72594 -8.55003 -7.91946 -7.55010 -6.58858 -4.05444 1.19141 1.64080 3.13163 3.24801 3.35411 3.53687 3.84267 4.07058 4.38549 4.38830 4.53344 4.62869 4.80956 4.84463 4.97572 5.19085 5.25390 5.34678 5.40230 5.42429 5.57030 5.62941 5.67831 5.70598 5.82733 5.98887 5.99340 6.08010 6.19509 6.26109 6.44815 6.54739 6.69044 6.74334 7.14086 7.30345 7.56188 8.21566 8.28465 8.46977 9.05446 9.24347 9.88724 10.43065 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.004243 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.550546 B = 6597.010187 C = 6882.708930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.440 5.440 3 C -0.338 4.338 4 H 0.094 0.906 5 C 0.066 3.934 6 N -0.844 5.844 7 Si 0.898 3.102 8 H -0.276 1.276 9 H -0.282 1.282 10 H -0.264 1.264 11 C 0.506 3.494 12 O -0.573 6.573 13 C -0.176 4.176 14 C -0.016 4.016 15 C -0.187 4.187 16 C 0.293 3.707 17 N -0.463 5.463 18 C 0.043 3.957 19 C -0.123 4.123 20 C -0.133 4.133 21 C 0.034 3.966 22 N -0.521 5.521 23 C 0.107 3.893 24 H 0.129 0.871 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.273 0.727 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.248 -14.134 4.220 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.159 5.159 3 C -0.464 4.464 4 H 0.111 0.889 5 C -0.142 4.142 6 N -0.478 5.478 7 Si 0.723 3.277 8 H -0.201 1.201 9 H -0.207 1.207 10 H -0.189 1.189 11 C 0.295 3.705 12 O -0.457 6.457 13 C -0.182 4.182 14 C -0.043 4.043 15 C -0.209 4.209 16 C 0.061 3.939 17 N -0.181 5.181 18 C -0.083 4.083 19 C -0.161 4.161 20 C -0.171 4.171 21 C -0.093 4.093 22 N -0.235 5.235 23 C -0.050 4.050 24 H 0.147 0.853 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -7.495 -14.472 3.748 16.723 hybrid contribution 1.032 1.123 0.926 1.784 sum -6.463 -13.349 4.673 15.551 Atomic orbital electron populations 1.22773 0.82962 1.07054 0.96333 1.43224 1.04623 1.04507 1.63542 1.19133 1.16014 0.91720 1.19566 0.88879 1.25544 0.95873 0.97639 0.95108 1.69791 1.15914 1.30894 1.31215 0.86446 0.83022 0.79505 0.78774 1.20129 1.20695 1.18883 1.17965 0.86540 0.83147 0.82834 1.90611 1.16313 1.86503 1.52300 1.21304 0.95515 0.96986 1.04420 1.21237 1.00558 0.90631 0.91901 1.21125 0.93401 0.99570 1.06788 1.20010 0.91068 0.88130 0.94708 1.61821 1.11717 1.28050 1.16560 1.23304 1.00027 0.99018 0.85924 1.22500 0.94588 0.99367 0.99677 1.22460 0.97917 0.99721 0.97018 1.22881 0.85234 1.01863 0.99277 1.67668 1.39598 0.99819 1.16386 1.24651 0.92047 0.94779 0.93513 0.85311 0.94966 0.93801 0.91634 0.84164 0.84934 0.89355 0.92709 0.90686 0.90528 0.91270 0.90941 0.89767 0.90262 0.78963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.12 8.00 59.85 0.48 1.60 16 2 N -0.44 -11.29 2.98 -123.63 -0.37 -11.65 16 3 C -0.34 -9.33 8.68 -14.99 -0.13 -9.46 16 4 H 0.09 2.68 7.98 -52.49 -0.42 2.27 16 5 C 0.07 1.73 5.42 -17.45 -0.09 1.63 16 6 N -0.84 -21.51 10.81 55.50 0.60 -20.91 16 7 Si 0.90 20.28 29.67 -169.99 -5.04 15.23 16 8 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 11 C 0.51 12.77 7.39 -12.51 -0.09 12.68 16 12 O -0.57 -16.16 16.69 5.26 0.09 -16.08 16 13 C -0.18 -3.68 5.76 -104.82 -0.60 -4.28 16 14 C -0.02 -0.30 9.66 -39.27 -0.38 -0.68 16 15 C -0.19 -2.94 9.38 -39.65 -0.37 -3.31 16 16 C 0.29 4.75 6.20 -155.26 -0.96 3.78 16 17 N -0.46 -6.24 5.28 -169.25 -0.89 -7.13 16 18 C 0.04 0.46 6.03 -1.90 -0.01 0.45 16 19 C -0.12 -1.04 7.06 -24.87 -0.18 -1.21 16 20 C -0.13 -1.21 6.93 -25.36 -0.18 -1.38 16 21 C 0.03 0.42 6.34 -2.74 -0.02 0.40 16 22 N -0.52 -9.18 8.10 -12.12 -0.10 -9.28 16 23 C 0.11 2.02 9.10 -17.10 -0.16 1.87 16 24 H 0.13 3.05 5.35 -51.93 -0.28 2.77 16 25 H 0.03 0.62 6.60 -51.93 -0.34 0.28 16 26 H 0.04 0.90 6.07 -51.93 -0.32 0.59 16 27 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 28 H 0.14 2.48 7.93 -52.49 -0.42 2.06 16 29 H 0.13 1.70 8.01 -52.49 -0.42 1.28 16 30 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.05 0.64 7.99 -51.93 -0.42 0.22 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.17 6.48 -51.93 -0.34 0.83 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.19 3.50 3.32 -52.78 -0.18 3.32 16 LS Contribution 307.68 15.07 4.64 4.64 Total: -1.00 -30.46 307.68 -8.56 -39.02 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.79 Total: 4.06 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.69 Total: 2.09 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.76 Total: -48.97 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.09 Total: -16.08 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.04 Total: 15.23 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.46 -8.56 -39.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330460806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.258 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds