Wall clock time and date at job start Mon Mar 30 2020 02:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36914 * 119.99583 * 2 1 4 4 H 1.07993 * 120.00069 * 227.99231 * 3 2 1 5 5 C 1.39020 * 120.00122 * 47.72098 * 3 2 1 6 6 N 1.31388 * 119.99625 * 323.97101 * 5 3 2 7 7 Si 1.86790 * 120.00187 * 143.96993 * 5 3 2 8 8 H 1.48497 * 109.47527 * 89.99873 * 7 5 3 9 9 H 1.48506 * 109.47158 * 210.00192 * 7 5 3 10 10 H 1.48506 * 109.47177 * 329.99742 * 7 5 3 11 11 C 1.34773 * 120.00071 * 179.97438 * 2 1 3 12 12 O 1.21622 * 119.99837 * 164.71423 * 11 2 1 13 13 C 1.47440 * 119.99928 * 344.71915 * 11 2 1 14 14 C 1.40404 * 120.47492 * 206.19943 * 13 11 2 15 15 C 1.36852 * 118.48438 * 180.02562 * 14 13 11 16 16 C 1.39406 * 119.38358 * 0.02562 * 15 14 13 17 17 N 1.38473 * 119.53161 * 179.97438 * 16 15 14 18 18 C 1.48533 * 110.99980 * 62.60668 * 17 16 15 19 19 C 1.54929 * 103.22871 * 159.72153 * 18 17 16 20 20 C 1.54598 * 102.92315 * 322.58781 * 19 18 17 21 21 C 1.47902 * 111.00249 * 180.02562 * 17 16 15 22 22 N 1.32605 * 120.93959 * 0.02562 * 16 15 14 23 23 C 1.31679 * 121.63936 * 359.65534 * 22 16 15 24 24 H 1.09002 * 109.47350 * 355.13356 * 1 2 3 25 25 H 1.09000 * 109.46671 * 115.13656 * 1 2 3 26 26 H 1.09004 * 109.46756 * 235.13659 * 1 2 3 27 27 H 0.96999 * 119.99847 * 179.97438 * 6 5 3 28 28 H 1.07995 * 120.75901 * 359.97438 * 14 13 11 29 29 H 1.07994 * 120.30460 * 179.97438 * 15 14 13 30 30 H 1.09002 * 110.66776 * 278.15936 * 18 17 16 31 31 H 1.08998 * 110.66740 * 41.28238 * 18 17 16 32 32 H 1.08997 * 110.72751 * 204.22510 * 19 18 17 33 33 H 1.09008 * 110.87721 * 81.01355 * 19 18 17 34 34 H 1.09003 * 110.30595 * 263.04524 * 20 19 18 35 35 H 1.08998 * 110.31295 * 140.87433 * 20 19 18 36 36 H 1.09000 * 109.91560 * 333.51375 * 21 17 16 37 37 H 1.09001 * 109.91503 * 94.80534 * 21 17 16 38 38 H 1.08001 * 119.74317 * 180.31588 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1495 1.1858 0.0000 4 1 2.9616 1.3405 -0.6949 5 6 1.7956 2.1927 0.8908 6 7 0.5330 2.3806 1.2018 7 14 3.1150 3.2784 1.6454 8 1 3.3357 4.4641 0.7790 9 1 2.6782 3.7243 2.9929 10 1 4.3802 2.5099 1.7643 11 6 2.1389 -1.1672 0.0005 12 8 3.3229 -1.1859 -0.2772 13 6 1.4408 -2.4213 0.3376 14 6 2.1493 -3.5089 0.8729 15 6 1.4607 -4.6535 1.1705 16 6 0.0877 -4.7066 0.9351 17 7 -0.6120 -5.8634 1.2345 18 6 -0.5525 -6.1601 2.6887 19 6 -1.7595 -7.1066 2.9071 20 6 -2.8332 -6.5216 1.9611 21 6 -2.0474 -5.7134 0.9115 22 7 -0.5577 -3.6653 0.4276 23 6 0.0651 -2.5432 0.1329 24 1 -0.3634 1.0240 0.0872 25 1 -0.3633 -0.4365 -0.9304 26 1 -0.3633 -0.5875 0.8433 27 1 0.2860 3.0829 1.8236 28 1 3.2134 -3.4440 1.0451 29 1 1.9764 -5.5080 1.5830 30 1 0.3812 -6.6627 2.9410 31 1 -0.6690 -5.2471 3.2727 32 1 -2.0965 -7.0693 3.9430 33 1 -1.5088 -8.1281 2.6211 34 1 -3.5089 -5.8685 2.5136 35 1 -3.3914 -7.3245 1.4796 36 1 -2.3317 -4.6624 0.9631 37 1 -2.2467 -6.1062 -0.0855 38 1 -0.4917 -1.7123 -0.2745 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330460806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:14 Heat of formation + Delta-G solvation = 35.175261 kcal Electronic energy + Delta-G solvation = -21105.457046 eV Core-core repulsion = 17948.968248 eV Total energy + Delta-G solvation = -3156.488798 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.99076 -40.45611 -38.82372 -36.83388 -34.34302 -33.72477 -33.30911 -30.48042 -29.90475 -28.37476 -26.83002 -24.72217 -24.42796 -22.39763 -21.63193 -21.22392 -19.22410 -18.56831 -18.34105 -17.35695 -16.91666 -16.56052 -16.36754 -15.78706 -15.72071 -15.38732 -14.90774 -14.63820 -14.38570 -14.14458 -13.91282 -13.60987 -13.55825 -13.20189 -13.13372 -13.03974 -12.58213 -12.27147 -12.18275 -12.13519 -11.96662 -11.42766 -11.12228 -10.91551 -10.78079 -10.56548 -10.33829 -9.52416 -9.20635 -8.55542 -6.11648 -0.25352 0.24201 1.32184 1.40331 1.53400 1.97649 2.21101 2.55953 2.68348 2.84321 3.05705 3.36739 3.65295 3.81826 3.90022 3.95899 4.05692 4.13915 4.22458 4.35364 4.48055 4.55194 4.58506 4.71660 4.77619 4.86100 4.93860 5.00483 5.03693 5.15100 5.16760 5.24651 5.30712 5.39893 5.57096 5.62319 6.06704 6.22879 6.51871 6.83707 7.05743 7.29657 7.92846 8.45549 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.030311 B = 0.004243 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.550546 B = 6597.010187 C = 6882.708930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.453 5.453 3 C -0.382 4.382 4 H 0.064 0.936 5 C 0.040 3.960 6 N -0.851 5.851 7 Si 0.959 3.041 8 H -0.263 1.263 9 H -0.265 1.265 10 H -0.283 1.283 11 C 0.499 3.501 12 O -0.619 6.619 13 C -0.207 4.207 14 C -0.019 4.019 15 C -0.176 4.176 16 C 0.302 3.698 17 N -0.465 5.465 18 C 0.037 3.963 19 C -0.115 4.115 20 C -0.128 4.128 21 C 0.029 3.971 22 N -0.528 5.528 23 C 0.114 3.886 24 H 0.112 0.888 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.282 0.718 28 H 0.141 0.859 29 H 0.168 0.832 30 H 0.106 0.894 31 H 0.045 0.955 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.575 -16.111 5.918 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.172 5.172 3 C -0.509 4.509 4 H 0.082 0.918 5 C -0.168 4.168 6 N -0.484 5.484 7 Si 0.781 3.219 8 H -0.188 1.188 9 H -0.189 1.189 10 H -0.209 1.209 11 C 0.289 3.711 12 O -0.506 6.506 13 C -0.214 4.214 14 C -0.046 4.046 15 C -0.198 4.198 16 C 0.069 3.931 17 N -0.183 5.183 18 C -0.088 4.088 19 C -0.153 4.153 20 C -0.166 4.166 21 C -0.098 4.098 22 N -0.242 5.242 23 C -0.042 4.042 24 H 0.130 0.870 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.159 0.841 29 H 0.186 0.814 30 H 0.124 0.876 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -8.882 -16.452 5.457 19.477 hybrid contribution 1.343 1.561 0.396 2.097 sum -7.539 -14.892 5.853 17.688 Atomic orbital electron populations 1.22751 0.80991 1.06411 0.98092 1.43406 1.05943 1.04222 1.63595 1.19025 1.16839 0.93499 1.21491 0.91799 1.26109 0.97600 0.98493 0.94587 1.69822 1.16496 1.31275 1.30850 0.85534 0.79578 0.78019 0.78719 1.18764 1.18927 1.20861 1.18581 0.86309 0.84402 0.81782 1.90550 1.18301 1.87449 1.54310 1.21016 0.96409 0.96096 1.07843 1.21344 1.00769 0.90812 0.91659 1.21392 0.93215 0.99503 1.05658 1.20465 0.91683 0.88266 0.92733 1.61863 1.12288 1.25767 1.18418 1.23498 1.02247 0.99415 0.83599 1.22526 0.92953 0.99154 1.00664 1.22456 0.97914 0.99877 0.96340 1.22957 0.84900 1.01405 1.00528 1.67776 1.39434 0.99833 1.17170 1.24552 0.91117 0.95481 0.93078 0.86970 0.92503 0.92659 0.90740 0.84123 0.81411 0.87614 0.93633 0.88714 0.89341 0.90717 0.89275 0.91647 0.90428 0.78775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.64 8.00 127.77 1.02 3.66 16 2 N -0.45 -24.14 2.98 -663.31 -1.97 -26.12 16 3 C -0.38 -22.02 8.68 84.09 0.73 -21.29 16 4 H 0.06 3.94 7.98 -2.91 -0.02 3.92 16 5 C 0.04 2.12 5.42 84.95 0.46 2.58 16 6 N -0.85 -43.42 10.81 21.68 0.23 -43.18 16 7 Si 0.96 42.13 29.67 68.60 2.04 44.16 16 8 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 9 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 11 C 0.50 26.23 7.39 86.67 0.64 26.87 16 12 O -0.62 -36.76 16.69 -4.10 -0.07 -36.83 16 13 C -0.21 -8.81 5.76 -19.99 -0.12 -8.92 16 14 C -0.02 -0.70 9.66 22.47 0.22 -0.48 16 15 C -0.18 -5.16 9.38 22.23 0.21 -4.95 16 16 C 0.30 9.15 6.20 133.25 0.83 9.98 16 17 N -0.47 -11.22 5.28 -689.39 -3.64 -14.86 16 18 C 0.04 0.67 6.03 86.65 0.52 1.19 16 19 C -0.12 -1.46 7.06 31.80 0.22 -1.23 16 20 C -0.13 -1.88 6.93 31.48 0.22 -1.67 16 21 C 0.03 0.64 6.34 86.45 0.55 1.19 16 22 N -0.53 -18.03 8.10 -192.26 -1.56 -19.59 16 23 C 0.11 4.31 9.10 85.05 0.77 5.09 16 24 H 0.11 5.40 5.35 -2.39 -0.01 5.38 16 25 H 0.06 2.21 6.60 -2.39 -0.02 2.20 16 26 H 0.06 2.30 6.07 -2.38 -0.01 2.28 16 27 H 0.28 13.23 8.31 -92.71 -0.77 12.46 16 28 H 0.14 5.01 7.93 -2.91 -0.02 4.99 16 29 H 0.17 3.69 8.01 -2.91 -0.02 3.66 16 30 H 0.11 1.55 8.11 -2.39 -0.02 1.53 16 31 H 0.05 0.93 7.99 -2.39 -0.02 0.91 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.72 6.48 -2.39 -0.02 1.71 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.20 7.06 3.32 -3.18 -0.01 7.05 16 Total: -1.00 -68.05 307.68 2.38 -65.67 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 1.08 Total: 18.72 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 6.28 Total: 12.02 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -6.94 Total: -103.75 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.07 Total: -36.83 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.04 Total: 44.16 kcal Total: -68.05 2.38 -65.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330460806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.845 kcal (2) G-P(sol) polarization free energy of solvation -68.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds