Wall clock time and date at job start Mon Mar 30 2020 01:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46801 * 2 1 4 4 C 1.50697 * 109.47249 * 120.00007 * 2 1 3 5 5 H 1.08010 * 119.99851 * 120.00019 * 4 2 1 6 6 C 1.37878 * 120.00084 * 300.00251 * 4 2 1 7 7 N 1.31516 * 120.00058 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99928 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47110 * 90.00078 * 8 6 4 10 10 H 1.48505 * 109.47035 * 210.00166 * 8 6 4 11 11 H 1.48506 * 109.47298 * 329.99708 * 8 6 4 12 12 N 1.46504 * 109.47163 * 240.00198 * 2 1 3 13 13 C 1.46497 * 120.00149 * 299.99810 * 12 2 1 14 14 C 1.34773 * 119.99900 * 119.99784 * 12 2 1 15 15 O 1.21481 * 120.00115 * 2.33502 * 14 12 2 16 16 C 1.48451 * 119.99986 * 182.34039 * 14 12 2 17 17 C 1.39538 * 120.55305 * 172.93471 * 16 14 12 18 18 C 1.38755 * 118.26875 * 179.97438 * 17 16 14 19 19 N 1.32213 * 119.14450 * 359.72573 * 18 17 16 20 20 C 1.31882 * 121.03389 * 0.54496 * 19 18 17 21 21 C 1.50705 * 119.04070 * 179.71565 * 20 19 18 22 22 C 1.53005 * 117.49648 * 299.73606 * 21 20 19 23 23 C 1.53002 * 60.03294 * 107.47352 * 22 21 20 24 24 N 1.31584 * 121.91953 * 359.44380 * 20 19 18 25 25 H 1.08997 * 109.47110 * 299.99568 * 1 2 3 26 26 H 1.09000 * 109.47106 * 60.00096 * 1 2 3 27 27 H 1.09003 * 109.46801 * 179.97438 * 1 2 3 28 28 H 0.96991 * 119.99881 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47254 * 263.84849 * 13 12 2 30 30 H 1.09003 * 109.46892 * 23.84572 * 13 12 2 31 31 H 1.08997 * 109.47180 * 143.84272 * 13 12 2 32 32 H 1.07999 * 120.86570 * 359.97438 * 17 16 14 33 33 H 1.08002 * 120.43326 * 179.97438 * 18 17 16 34 34 H 1.08998 * 115.54998 * 154.06479 * 21 20 19 35 35 H 1.09002 * 117.49607 * 214.97772 * 22 21 20 36 36 H 1.08996 * 117.50048 * 359.97366 * 22 21 20 37 37 H 1.08997 * 117.49562 * 107.49211 * 23 22 21 38 38 H 1.08988 * 117.49848 * 252.51935 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6305 -0.5440 4.4118 10 1 1.3445 -0.9491 5.1123 11 1 2.4881 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.1216 1.1144 -1.8701 16 6 3.2451 -0.7192 -3.3211 17 6 3.9222 -0.0120 -4.3153 18 6 4.3235 -0.6982 -5.4525 19 7 4.0580 -1.9895 -5.5526 20 6 3.4113 -2.6268 -4.5961 21 6 3.1268 -4.0977 -4.7598 22 6 2.2755 -4.5235 -5.9577 23 6 3.7774 -4.8156 -5.9450 24 7 3.0118 -2.0171 -3.5006 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7089 1.1613 3.4844 29 1 2.4688 -2.7350 -1.0685 30 1 0.7446 -2.3290 -0.8930 31 1 1.5168 -2.2589 -2.4952 32 1 4.1284 1.0421 -4.2026 33 1 4.8495 -0.1851 -6.2440 34 1 3.0088 -4.6597 -3.8333 35 1 1.5978 -5.3660 -5.8194 36 1 1.9209 -3.7399 -6.6271 37 1 4.0876 -5.8502 -5.7982 38 1 4.4107 -4.2239 -6.6057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331447339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:45 Heat of formation + Delta-G solvation = 59.890722 kcal Electronic energy + Delta-G solvation = -21121.064862 eV Core-core repulsion = 17965.647807 eV Total energy + Delta-G solvation = -3155.417055 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.28643 -38.90573 -37.09436 -35.48053 -34.01155 -32.60868 -31.73606 -29.39112 -26.27739 -25.46833 -25.18273 -24.87163 -22.53896 -22.35268 -20.66085 -18.91210 -17.83454 -17.01975 -16.41600 -15.72727 -15.61198 -15.28388 -15.23804 -14.69475 -14.25996 -14.05601 -13.94197 -13.00486 -12.60270 -12.46406 -12.27728 -11.70764 -11.64045 -11.51496 -11.07098 -11.06476 -10.89977 -10.77923 -10.76484 -10.63452 -10.51523 -10.26090 -10.17708 -9.68880 -9.33659 -9.18179 -8.76075 -8.44021 -7.61793 -6.08227 -4.16005 0.63053 0.89532 3.09749 3.27721 3.33920 3.36123 3.48025 3.65374 3.75756 4.01535 4.12932 4.38843 4.70429 4.72697 4.82010 4.85462 4.97979 5.09549 5.23299 5.44306 5.47643 5.65806 5.68437 5.92200 6.02614 6.12814 6.19087 6.42355 6.63809 6.76585 6.84233 6.86487 7.02456 7.38866 7.45527 7.69619 7.94960 8.01097 8.15513 8.44390 8.74515 8.93127 9.50111 10.97264 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.004650 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.437500 B = 6020.410551 C = 6557.116520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.254 3.746 3 H 0.065 0.935 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.561 5.561 13 C 0.083 3.917 14 C 0.547 3.453 15 O -0.541 6.541 16 C 0.150 3.850 17 C -0.183 4.183 18 C 0.148 3.852 19 N -0.513 5.513 20 C 0.337 3.663 21 C -0.100 4.100 22 C -0.156 4.156 23 C -0.154 4.154 24 N -0.478 5.478 25 H 0.096 0.904 26 H 0.012 0.988 27 H 0.033 0.967 28 H 0.264 0.736 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.159 0.841 33 H 0.174 0.826 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 -8.636 -16.411 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.154 3.846 3 H 0.082 0.918 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.289 5.289 13 C -0.060 4.060 14 C 0.331 3.669 15 O -0.419 6.419 16 C 0.002 3.998 17 C -0.205 4.205 18 C -0.019 4.019 19 N -0.228 5.228 20 C 0.070 3.930 21 C -0.120 4.120 22 C -0.194 4.194 23 C -0.192 4.192 24 N -0.195 5.195 25 H 0.114 0.886 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.107 0.893 32 H 0.177 0.823 33 H 0.191 0.809 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.918 -8.847 -16.155 18.648 hybrid contribution 0.510 0.466 1.082 1.284 sum 3.428 -8.381 -15.073 17.584 Atomic orbital electron populations 1.22100 0.97807 0.99649 1.00949 1.19104 0.91154 0.94564 0.79779 0.91752 1.21290 1.31883 1.13029 0.90071 0.92156 1.24886 0.94901 0.94988 0.98957 1.69874 1.36341 1.22626 1.23814 0.86465 0.78632 0.79910 0.82218 1.20600 1.21082 1.19872 1.48250 1.46110 1.12474 1.22057 1.22120 1.00254 0.81431 1.02187 1.17802 0.80819 0.85928 0.82366 1.90748 1.57733 1.16957 1.76422 1.22174 0.92569 0.89629 0.95404 1.22958 0.99058 1.03812 0.94712 1.23239 0.93258 0.89451 0.95904 1.67986 1.13864 1.10047 1.30908 1.22269 0.89561 0.95700 0.85453 1.20652 1.07675 0.87993 0.95710 1.22976 0.94294 1.03219 0.98896 1.23018 0.95757 1.00795 0.99584 1.68779 1.18540 1.09631 1.22546 0.88580 0.96931 0.94843 0.92646 0.93335 0.91794 0.89339 0.82322 0.80935 0.85065 0.87888 0.88659 0.88230 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.96 37.16 0.33 -3.21 16 2 C 0.25 6.60 2.62 -69.08 -0.18 6.42 16 3 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 4 C -0.52 -14.41 8.37 -34.44 -0.29 -14.69 16 5 H 0.06 1.66 7.65 -52.48 -0.40 1.25 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.15 11.32 55.43 0.63 -24.53 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.56 -12.65 2.75 -176.15 -0.48 -13.13 16 13 C 0.08 1.58 8.56 59.85 0.51 2.09 16 14 C 0.55 11.97 7.68 -12.05 -0.09 11.88 16 15 O -0.54 -13.33 15.78 5.38 0.08 -13.24 16 16 C 0.15 2.64 6.65 -82.63 -0.55 2.09 16 17 C -0.18 -2.60 9.72 -38.91 -0.38 -2.98 16 18 C 0.15 1.72 11.31 -17.20 -0.19 1.53 16 19 N -0.51 -6.65 9.32 -10.74 -0.10 -6.75 16 20 C 0.34 4.68 7.31 -157.30 -1.15 3.54 16 21 C -0.10 -1.09 6.24 -91.73 -0.57 -1.67 16 22 C -0.16 -1.37 10.23 -26.73 -0.27 -1.64 16 23 C -0.15 -1.33 10.01 -26.69 -0.27 -1.60 16 24 N -0.48 -7.74 6.13 -7.32 -0.04 -7.78 16 25 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.03 0.75 6.67 -51.93 -0.35 0.40 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 1.20 6.44 -51.93 -0.33 0.87 16 31 H 0.09 1.52 5.26 -51.94 -0.27 1.24 16 32 H 0.16 2.10 7.75 -52.49 -0.41 1.69 16 33 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.13 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.11 1.02 7.53 -51.94 -0.39 0.63 16 LS Contribution 318.60 15.07 4.80 4.80 Total: -1.00 -31.37 318.60 -8.25 -39.62 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.92 Total: 1.35 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -3.20 Total: 3.45 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.00 Total: -52.19 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.37 -8.25 -39.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331447339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.512 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds