Wall clock time and date at job start Mon Mar 30 2020 01:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46801 * 2 1 4 4 C 1.50697 * 109.47249 * 120.00007 * 2 1 3 5 5 H 1.08010 * 119.99851 * 120.00019 * 4 2 1 6 6 C 1.37878 * 120.00084 * 300.00251 * 4 2 1 7 7 N 1.31516 * 120.00058 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99928 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47110 * 90.00078 * 8 6 4 10 10 H 1.48505 * 109.47035 * 210.00166 * 8 6 4 11 11 H 1.48506 * 109.47298 * 329.99708 * 8 6 4 12 12 N 1.46504 * 109.47163 * 240.00198 * 2 1 3 13 13 C 1.46497 * 120.00149 * 299.99810 * 12 2 1 14 14 C 1.34773 * 119.99900 * 119.99784 * 12 2 1 15 15 O 1.21481 * 120.00115 * 2.33502 * 14 12 2 16 16 C 1.48451 * 119.99986 * 182.34039 * 14 12 2 17 17 C 1.39538 * 120.55305 * 172.93471 * 16 14 12 18 18 C 1.38755 * 118.26875 * 179.97438 * 17 16 14 19 19 N 1.32213 * 119.14450 * 359.72573 * 18 17 16 20 20 C 1.31882 * 121.03389 * 0.54496 * 19 18 17 21 21 C 1.50705 * 119.04070 * 179.71565 * 20 19 18 22 22 C 1.53005 * 117.49648 * 299.73606 * 21 20 19 23 23 C 1.53002 * 60.03294 * 107.47352 * 22 21 20 24 24 N 1.31584 * 121.91953 * 359.44380 * 20 19 18 25 25 H 1.08997 * 109.47110 * 299.99568 * 1 2 3 26 26 H 1.09000 * 109.47106 * 60.00096 * 1 2 3 27 27 H 1.09003 * 109.46801 * 179.97438 * 1 2 3 28 28 H 0.96991 * 119.99881 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47254 * 263.84849 * 13 12 2 30 30 H 1.09003 * 109.46892 * 23.84572 * 13 12 2 31 31 H 1.08997 * 109.47180 * 143.84272 * 13 12 2 32 32 H 1.07999 * 120.86570 * 359.97438 * 17 16 14 33 33 H 1.08002 * 120.43326 * 179.97438 * 18 17 16 34 34 H 1.08998 * 115.54998 * 154.06479 * 21 20 19 35 35 H 1.09002 * 117.49607 * 214.97772 * 22 21 20 36 36 H 1.08996 * 117.50048 * 359.97366 * 22 21 20 37 37 H 1.08997 * 117.49562 * 107.49211 * 23 22 21 38 38 H 1.08988 * 117.49848 * 252.51935 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.6305 -0.5440 4.4118 10 1 1.3445 -0.9491 5.1123 11 1 2.4881 -2.5654 3.7122 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.1216 1.1144 -1.8701 16 6 3.2451 -0.7192 -3.3211 17 6 3.9222 -0.0120 -4.3153 18 6 4.3235 -0.6982 -5.4525 19 7 4.0580 -1.9895 -5.5526 20 6 3.4113 -2.6268 -4.5961 21 6 3.1268 -4.0977 -4.7598 22 6 2.2755 -4.5235 -5.9577 23 6 3.7774 -4.8156 -5.9450 24 7 3.0118 -2.0171 -3.5006 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7089 1.1613 3.4844 29 1 2.4688 -2.7350 -1.0685 30 1 0.7446 -2.3290 -0.8930 31 1 1.5168 -2.2589 -2.4952 32 1 4.1284 1.0421 -4.2026 33 1 4.8495 -0.1851 -6.2440 34 1 3.0088 -4.6597 -3.8333 35 1 1.5978 -5.3660 -5.8194 36 1 1.9209 -3.7399 -6.6271 37 1 4.0876 -5.8502 -5.7982 38 1 4.4107 -4.2239 -6.6057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331447339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:44 Heat of formation + Delta-G solvation = 41.500730 kcal Electronic energy + Delta-G solvation = -21121.862312 eV Core-core repulsion = 17965.647807 eV Total energy + Delta-G solvation = -3156.214505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.44774 -40.54190 -37.92470 -37.32139 -35.39506 -34.41692 -32.84939 -31.32127 -27.84443 -27.36080 -26.66265 -25.99365 -23.75608 -23.16259 -22.08299 -20.45085 -19.04273 -18.60938 -18.18195 -17.31459 -16.83527 -16.65599 -16.58093 -16.17072 -15.65707 -15.26167 -15.00297 -14.77264 -14.46513 -14.03159 -13.55665 -13.42077 -12.99920 -12.86267 -12.76719 -12.70390 -12.34421 -12.23419 -12.14670 -11.98757 -11.84762 -11.74195 -11.41983 -11.30140 -11.22037 -10.56804 -10.35763 -10.06208 -9.43463 -8.18105 -6.34835 -0.60728 -0.13848 1.40146 1.41139 1.51548 1.69313 2.01182 2.40295 2.54318 2.66459 2.93525 3.09851 3.18110 3.44688 3.68676 3.94018 3.96383 4.16406 4.17666 4.47985 4.52430 4.60032 4.75218 4.82444 4.85119 4.85242 4.99664 5.01362 5.06304 5.21602 5.34653 5.38398 5.38822 5.52350 5.61457 5.77400 5.95588 6.09761 6.61287 6.69594 6.88882 7.10519 7.36953 8.86608 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.004650 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.437500 B = 6020.410551 C = 6557.116520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.257 3.743 3 H 0.017 0.983 4 C -0.541 4.541 5 H 0.056 0.944 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.966 3.034 9 H -0.281 1.281 10 H -0.276 1.276 11 H -0.265 1.265 12 N -0.572 5.572 13 C 0.092 3.908 14 C 0.540 3.460 15 O -0.581 6.581 16 C 0.124 3.876 17 C -0.182 4.182 18 C 0.169 3.831 19 N -0.510 5.510 20 C 0.333 3.667 21 C -0.126 4.126 22 C -0.144 4.144 23 C -0.138 4.138 24 N -0.495 5.495 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.047 0.953 28 H 0.267 0.733 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.165 0.835 33 H 0.223 0.777 34 H 0.134 0.866 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.741 -10.775 -18.174 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.156 3.844 3 H 0.035 0.965 4 C -0.579 4.579 5 H 0.074 0.926 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.791 3.209 9 H -0.207 1.207 10 H -0.201 1.201 11 H -0.189 1.189 12 N -0.300 5.300 13 C -0.050 4.050 14 C 0.326 3.674 15 O -0.462 6.462 16 C -0.022 4.022 17 C -0.205 4.205 18 C 0.002 3.998 19 N -0.224 5.224 20 C 0.067 3.933 21 C -0.146 4.146 22 C -0.182 4.182 23 C -0.176 4.176 24 N -0.213 5.213 25 H 0.092 0.908 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.127 0.873 32 H 0.182 0.818 33 H 0.240 0.760 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.107 0.893 37 H 0.139 0.861 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.589 -11.023 -17.932 21.353 hybrid contribution 0.354 1.140 1.499 1.916 sum 3.942 -9.884 -16.433 19.578 Atomic orbital electron populations 1.21887 0.96577 1.00297 1.00284 1.18750 0.92061 0.92429 0.81187 0.96543 1.21489 1.32257 1.13096 0.91099 0.92619 1.25707 0.94923 0.95626 1.01872 1.70001 1.36997 1.23698 1.24627 0.85438 0.77928 0.79064 0.78483 1.20691 1.20115 1.18888 1.48247 1.46583 1.13710 1.21414 1.22207 0.99933 0.79317 1.03553 1.18444 0.79845 0.85663 0.83433 1.90701 1.59027 1.18809 1.77690 1.21563 0.95285 0.90743 0.94584 1.23129 0.98433 1.04181 0.94759 1.24004 0.91409 0.88834 0.95574 1.68147 1.13403 1.10536 1.30319 1.22839 0.88869 0.96939 0.84676 1.20814 1.10385 0.86430 0.96951 1.23064 0.94848 1.03379 0.96900 1.23101 0.95591 1.01445 0.97447 1.68583 1.19719 1.08976 1.23988 0.90784 0.95941 0.93388 0.92416 0.93486 0.91913 0.87258 0.81787 0.76046 0.84839 0.85881 0.89293 0.86094 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.56 8.96 71.98 0.64 -5.91 16 2 C 0.26 13.94 2.62 44.24 0.12 14.06 16 3 H 0.02 1.05 6.90 -2.39 -0.02 1.03 16 4 C -0.54 -30.51 8.37 25.60 0.21 -30.29 16 5 H 0.06 3.11 7.65 -2.91 -0.02 3.09 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.91 -53.02 11.32 21.45 0.24 -52.78 16 8 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 12 N -0.57 -26.64 2.75 -829.52 -2.28 -28.93 16 13 C 0.09 3.50 8.56 127.77 1.09 4.60 16 14 C 0.54 24.53 7.68 86.97 0.67 25.20 16 15 O -0.58 -30.23 15.78 -3.66 -0.06 -30.28 16 16 C 0.12 4.39 6.65 41.99 0.28 4.67 16 17 C -0.18 -4.97 9.72 22.71 0.22 -4.75 16 18 C 0.17 3.41 11.31 84.76 0.96 4.37 16 19 N -0.51 -11.77 9.32 -187.88 -1.75 -13.52 16 20 C 0.33 8.65 7.31 138.79 1.01 9.66 16 21 C -0.13 -2.45 6.24 -11.51 -0.07 -2.53 16 22 C -0.14 -2.10 10.23 30.60 0.31 -1.78 16 23 C -0.14 -1.96 10.01 30.62 0.31 -1.65 16 24 N -0.50 -15.68 6.13 -177.07 -1.09 -16.76 16 25 H 0.07 4.01 6.07 -2.39 -0.01 4.00 16 26 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 2.18 6.67 -2.39 -0.02 2.17 16 28 H 0.27 14.56 8.31 -92.72 -0.77 13.79 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 2.36 6.44 -2.39 -0.02 2.34 16 31 H 0.11 3.71 5.26 -2.41 -0.01 3.70 16 32 H 0.16 4.24 7.75 -2.91 -0.02 4.21 16 33 H 0.22 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.61 7.53 -2.39 -0.02 1.59 16 Total: -1.00 -70.61 318.60 4.37 -66.25 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.07 Total: 13.07 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 6.21 Total: 17.12 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.88 Total: -111.99 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.06 Total: -30.28 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -70.61 4.37 -66.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331447339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.746 kcal (2) G-P(sol) polarization free energy of solvation -70.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds