Wall clock time and date at job start Mon Mar 30 2020 02:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34769 * 119.99677 * 2 1 4 4 O 1.21588 * 119.99943 * 179.97438 * 3 2 1 5 5 N 1.34774 * 120.00768 * 359.97438 * 3 2 1 6 6 C 1.39241 * 120.00542 * 175.72334 * 5 3 2 7 7 C 1.39486 * 119.83381 * 215.00583 * 6 5 3 8 8 C 1.36376 * 120.16677 * 179.76236 * 7 6 5 9 9 C 1.40868 * 119.82891 * 0.53037 * 8 7 6 10 10 C 1.41154 * 120.16632 * 179.69604 * 9 8 7 11 11 H 1.07997 * 120.00357 * 214.81702 * 10 9 8 12 12 C 1.39894 * 119.99718 * 34.82383 * 10 9 8 13 13 N 1.30879 * 119.99966 * 355.52381 * 12 10 9 14 14 Si 1.86802 * 120.00046 * 175.52467 * 12 10 9 15 15 H 1.48491 * 109.46984 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.46807 * 120.00109 * 14 12 10 17 17 H 1.48500 * 109.46882 * 239.99605 * 14 12 10 18 18 C 1.40880 * 119.67224 * 359.72466 * 9 8 7 19 19 C 1.36367 * 119.82687 * 359.97438 * 18 9 8 20 20 C 1.46494 * 119.99756 * 179.97438 * 2 1 3 21 21 C 1.53508 * 114.17083 * 60.00289 * 20 2 1 22 22 N 1.47480 * 87.93284 * 220.32406 * 21 20 2 23 23 C 1.47480 * 87.83560 * 27.01246 * 22 21 20 24 24 H 1.09001 * 109.47159 * 269.99900 * 1 2 3 25 25 H 1.09004 * 109.47149 * 29.99994 * 1 2 3 26 26 H 1.09001 * 109.47330 * 150.00049 * 1 2 3 27 27 H 0.97004 * 119.99565 * 355.72715 * 5 3 2 28 28 H 1.07995 * 119.91652 * 359.97438 * 7 6 5 29 29 H 1.08002 * 120.08485 * 180.25744 * 8 7 6 30 30 H 0.96998 * 120.00256 * 179.97438 * 13 12 10 31 31 H 1.07994 * 120.08508 * 179.97438 * 18 9 8 32 32 H 1.07996 * 119.91859 * 179.97438 * 19 18 9 33 33 H 1.09001 * 113.25664 * 192.94799 * 20 2 1 34 34 H 1.09005 * 113.47984 * 105.55824 * 21 20 2 35 35 H 1.09002 * 113.53558 * 335.10126 * 21 20 2 36 36 H 1.00909 * 110.99972 * 138.70235 * 22 21 20 37 37 H 1.08993 * 113.47942 * 87.75163 * 23 22 21 38 38 H 1.09005 * 113.47326 * 218.22572 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1583 3.5386 0.0894 7 6 1.6015 4.6092 0.7890 8 6 2.2768 5.7902 0.8854 9 6 3.5345 5.9307 0.2668 10 6 4.2367 7.1519 0.3567 11 1 4.8377 7.4917 -0.4737 12 6 4.1541 7.9221 1.5217 13 7 3.3580 7.5553 2.4936 14 14 5.1802 9.4739 1.6901 15 1 5.9919 9.6663 0.4616 16 1 4.2833 10.6422 1.8794 17 1 6.0814 9.3465 2.8635 18 6 4.0879 4.8466 -0.4425 19 6 3.4036 3.6699 -0.5250 20 6 2.1974 -1.2687 0.0006 21 6 1.9053 -2.1637 -1.2119 22 7 1.9118 -3.3180 -0.2941 23 6 1.5043 -2.3944 0.7810 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4970 2.3356 -0.0635 28 1 0.6349 4.5016 1.2583 29 1 1.8463 6.6169 1.4310 30 1 3.3010 8.0891 3.3015 31 1 5.0515 4.9472 -0.9196 32 1 3.8262 2.8381 -1.0688 33 1 3.2579 -1.1534 0.2249 34 1 2.7149 -2.1844 -1.9415 35 1 0.9327 -1.9762 -1.6670 36 1 1.1684 -3.9625 -0.5183 37 1 0.4245 -2.2678 0.8586 38 1 1.9741 -2.6106 1.7405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334832960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:16 Heat of formation + Delta-G solvation = 46.268984 kcal Electronic energy + Delta-G solvation = -20678.080671 eV Core-core repulsion = 17522.072933 eV Total energy + Delta-G solvation = -3156.007738 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71223 -39.22627 -37.29075 -34.75279 -34.40208 -32.73842 -29.55731 -28.86844 -27.76937 -26.47933 -26.02706 -24.63797 -21.76716 -20.98553 -19.97725 -19.14675 -18.24852 -17.35352 -17.13971 -16.05844 -15.81917 -15.39084 -15.11084 -14.12407 -14.01866 -13.78876 -13.38130 -13.24558 -13.04645 -12.75815 -12.65115 -12.49138 -12.06276 -11.67170 -11.42430 -11.29509 -11.18347 -11.09514 -10.91753 -10.69922 -10.05537 -9.53497 -9.43055 -9.37519 -9.19173 -8.87109 -8.61764 -7.50634 -6.80434 -6.57955 -4.30122 2.63623 2.79824 3.11152 3.11969 3.16373 3.18736 3.60018 3.93683 4.01307 4.29227 4.35861 4.64742 4.74520 4.80696 4.96038 5.01971 5.22364 5.41547 5.46603 5.54827 5.67657 5.73143 5.84194 6.21078 6.38260 6.48942 6.79082 6.86196 6.87382 7.06733 7.16371 7.28272 7.39512 7.68929 7.87649 7.97554 8.12471 8.34117 8.42463 8.67787 8.93523 8.97197 9.09052 10.33350 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.048436 B = 0.003388 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.942687 B = 8262.403711 C = 8463.592507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.628 5.628 3 C 0.698 3.302 4 O -0.572 6.572 5 N -0.665 5.665 6 C 0.021 3.979 7 C -0.123 4.123 8 C -0.140 4.140 9 C 0.098 3.902 10 C -0.461 4.461 11 H 0.076 0.924 12 C 0.069 3.931 13 N -0.813 5.813 14 Si 0.915 3.085 15 H -0.262 1.262 16 H -0.275 1.275 17 H -0.275 1.275 18 C -0.203 4.203 19 C -0.086 4.086 20 C 0.144 3.856 21 C -0.017 4.017 22 N -0.622 5.622 23 C -0.013 4.013 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.391 0.609 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.276 0.724 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.322 0.678 37 H 0.070 0.930 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.122 -13.838 -3.274 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.367 5.367 3 C 0.400 3.600 4 O -0.449 6.449 5 N -0.312 5.312 6 C -0.072 4.072 7 C -0.143 4.143 8 C -0.161 4.161 9 C 0.096 3.904 10 C -0.492 4.492 11 H 0.094 0.906 12 C -0.145 4.145 13 N -0.441 5.441 14 Si 0.740 3.260 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.200 1.200 18 C -0.224 4.224 19 C -0.106 4.106 20 C 0.038 3.962 21 C -0.149 4.149 22 N -0.247 5.247 23 C -0.144 4.144 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.226 0.774 28 H 0.108 0.892 29 H 0.150 0.850 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.151 0.849 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.088 0.912 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.467 -14.001 -2.888 16.129 hybrid contribution -1.215 0.785 0.099 1.450 sum -8.683 -13.216 -2.789 16.057 Atomic orbital electron populations 1.21672 0.80516 1.02621 1.01727 1.46995 1.05779 1.04712 1.79168 1.15959 0.85512 0.80191 0.78338 1.90909 1.11392 1.85573 1.56988 1.42282 1.09058 1.03746 1.76118 1.17102 0.96839 0.84807 1.08444 1.20281 0.99504 0.94412 1.00122 1.21172 0.94772 0.96786 1.03321 1.17723 0.90622 0.92215 0.89885 1.19518 1.25789 1.03425 1.00498 0.90617 1.25867 0.94873 0.98391 0.95415 1.69774 1.31754 1.36915 1.05660 0.86159 0.79980 0.80743 0.79146 1.18616 1.20058 1.20032 1.20812 0.99817 0.93272 1.08456 1.20426 0.94262 0.97110 0.98827 1.22479 0.98629 0.80125 0.94968 1.24195 1.02012 0.91008 0.97677 1.67251 1.43401 1.08796 1.05228 1.24152 0.99678 0.92447 0.98165 0.92523 0.91190 0.91399 0.77387 0.89223 0.85038 0.91283 0.88615 0.87347 0.84943 0.89135 0.91453 0.86522 0.91169 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 8.91 59.85 0.53 1.21 16 2 N -0.63 -8.23 3.11 -179.36 -0.56 -8.79 16 3 C 0.70 12.72 8.11 -86.93 -0.71 12.01 16 4 O -0.57 -12.89 13.27 5.29 0.07 -12.82 16 5 N -0.67 -11.96 5.18 -14.10 -0.07 -12.04 16 6 C 0.02 0.47 6.31 -83.57 -0.53 -0.06 16 7 C -0.12 -2.82 9.90 -39.79 -0.39 -3.21 16 8 C -0.14 -3.64 8.62 -39.26 -0.34 -3.98 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.06 16 10 C -0.46 -12.44 9.02 -37.86 -0.34 -12.79 16 11 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 12 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 13 N -0.81 -21.37 10.60 55.54 0.59 -20.78 16 14 Si 0.91 19.22 29.56 -169.99 -5.03 14.20 16 15 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 16 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 C -0.20 -5.24 9.74 -39.26 -0.38 -5.62 16 19 C -0.09 -2.11 8.61 -39.79 -0.34 -2.45 16 20 C 0.14 1.74 4.55 -67.72 -0.31 1.43 16 21 C -0.02 -0.17 8.18 -7.55 -0.06 -0.23 16 22 N -0.62 -5.72 8.71 -122.67 -1.07 -6.79 16 23 C -0.01 -0.12 8.04 -7.55 -0.06 -0.18 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.56 6.30 -51.93 -0.33 0.24 16 26 H 0.07 0.44 6.19 -51.93 -0.32 0.12 16 27 H 0.39 5.53 6.51 -40.82 -0.27 5.27 16 28 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.13 3.51 6.13 -52.49 -0.32 3.19 16 30 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 31 H 0.10 2.34 8.06 -52.49 -0.42 1.92 16 32 H 0.11 2.65 6.22 -52.49 -0.33 2.32 16 33 H 0.13 1.96 7.28 -51.93 -0.38 1.58 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.55 6.97 -51.93 -0.36 0.19 16 36 H 0.32 2.23 8.91 -39.29 -0.35 1.88 16 37 H 0.07 0.51 6.57 -51.93 -0.34 0.17 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 310.47 15.07 4.68 4.68 Total: -1.00 -31.34 310.47 -9.66 -41.00 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -4.65 Total: 11.46 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -3.62 Total: -10.12 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -1.11 Total: -48.39 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.07 Total: -12.82 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.34 -9.66 -41.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334832960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.266 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds