Wall clock time and date at job start Mon Mar 30 2020 02:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34769 * 119.99677 * 2 1 4 4 O 1.21588 * 119.99943 * 179.97438 * 3 2 1 5 5 N 1.34774 * 120.00768 * 359.97438 * 3 2 1 6 6 C 1.39241 * 120.00542 * 175.72334 * 5 3 2 7 7 C 1.39486 * 119.83381 * 215.00583 * 6 5 3 8 8 C 1.36376 * 120.16677 * 179.76236 * 7 6 5 9 9 C 1.40868 * 119.82891 * 0.53037 * 8 7 6 10 10 C 1.41154 * 120.16632 * 179.69604 * 9 8 7 11 11 H 1.07997 * 120.00357 * 214.81702 * 10 9 8 12 12 C 1.39894 * 119.99718 * 34.82383 * 10 9 8 13 13 N 1.30879 * 119.99966 * 355.52381 * 12 10 9 14 14 Si 1.86802 * 120.00046 * 175.52467 * 12 10 9 15 15 H 1.48491 * 109.46984 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.46807 * 120.00109 * 14 12 10 17 17 H 1.48500 * 109.46882 * 239.99605 * 14 12 10 18 18 C 1.40880 * 119.67224 * 359.72466 * 9 8 7 19 19 C 1.36367 * 119.82687 * 359.97438 * 18 9 8 20 20 C 1.46494 * 119.99756 * 179.97438 * 2 1 3 21 21 C 1.53508 * 114.17083 * 60.00289 * 20 2 1 22 22 N 1.47480 * 87.93284 * 220.32406 * 21 20 2 23 23 C 1.47480 * 87.83560 * 27.01246 * 22 21 20 24 24 H 1.09001 * 109.47159 * 269.99900 * 1 2 3 25 25 H 1.09004 * 109.47149 * 29.99994 * 1 2 3 26 26 H 1.09001 * 109.47330 * 150.00049 * 1 2 3 27 27 H 0.97004 * 119.99565 * 355.72715 * 5 3 2 28 28 H 1.07995 * 119.91652 * 359.97438 * 7 6 5 29 29 H 1.08002 * 120.08485 * 180.25744 * 8 7 6 30 30 H 0.96998 * 120.00256 * 179.97438 * 13 12 10 31 31 H 1.07994 * 120.08508 * 179.97438 * 18 9 8 32 32 H 1.07996 * 119.91859 * 179.97438 * 19 18 9 33 33 H 1.09001 * 113.25664 * 192.94799 * 20 2 1 34 34 H 1.09005 * 113.47984 * 105.55824 * 21 20 2 35 35 H 1.09002 * 113.53558 * 335.10126 * 21 20 2 36 36 H 1.00909 * 110.99972 * 138.70235 * 22 21 20 37 37 H 1.08993 * 113.47942 * 87.75163 * 23 22 21 38 38 H 1.09005 * 113.47326 * 218.22572 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1672 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1583 3.5386 0.0894 7 6 1.6015 4.6092 0.7890 8 6 2.2768 5.7902 0.8854 9 6 3.5345 5.9307 0.2668 10 6 4.2367 7.1519 0.3567 11 1 4.8377 7.4917 -0.4737 12 6 4.1541 7.9221 1.5217 13 7 3.3580 7.5553 2.4936 14 14 5.1802 9.4739 1.6901 15 1 5.9919 9.6663 0.4616 16 1 4.2833 10.6422 1.8794 17 1 6.0814 9.3465 2.8635 18 6 4.0879 4.8466 -0.4425 19 6 3.4036 3.6699 -0.5250 20 6 2.1974 -1.2687 0.0006 21 6 1.9053 -2.1637 -1.2119 22 7 1.9118 -3.3180 -0.2941 23 6 1.5043 -2.3944 0.7810 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8900 -0.5138 27 1 0.4970 2.3356 -0.0635 28 1 0.6349 4.5016 1.2583 29 1 1.8463 6.6169 1.4310 30 1 3.3010 8.0891 3.3015 31 1 5.0515 4.9472 -0.9196 32 1 3.8262 2.8381 -1.0688 33 1 3.2579 -1.1534 0.2249 34 1 2.7149 -2.1844 -1.9415 35 1 0.9327 -1.9762 -1.6670 36 1 1.1684 -3.9625 -0.5183 37 1 0.4245 -2.2678 0.8586 38 1 1.9741 -2.6106 1.7405 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334832960.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:15 Heat of formation + Delta-G solvation = 23.448786 kcal Electronic energy + Delta-G solvation = -20679.070229 eV Core-core repulsion = 17522.072933 eV Total energy + Delta-G solvation = -3156.997296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.87598 -40.46186 -39.03050 -36.18235 -35.91793 -34.48711 -31.47098 -30.71055 -28.63366 -27.64557 -26.81034 -26.29832 -23.46775 -22.76596 -21.45631 -20.12637 -19.60510 -19.20426 -18.27697 -17.61724 -16.96103 -16.88425 -16.49914 -15.72179 -15.37566 -15.16190 -14.66587 -14.53532 -14.16391 -14.02735 -13.93297 -13.62121 -13.58330 -13.33089 -13.11722 -12.84670 -12.75765 -12.45728 -12.28448 -11.94991 -11.79295 -11.38332 -11.24217 -10.99715 -10.65756 -10.05852 -9.68766 -9.44978 -8.67593 -8.48562 -6.30897 0.84677 1.15676 1.40453 1.46528 1.55553 1.60393 2.13185 2.25865 2.81933 2.97307 3.23036 3.51206 3.70062 3.87775 4.09703 4.23351 4.28037 4.39953 4.54098 4.55651 4.72394 4.74435 4.83251 4.88312 4.95737 4.99751 5.14047 5.16057 5.31191 5.44935 5.52300 5.69269 5.80561 6.04094 6.08847 6.19832 6.28033 6.41363 6.70075 6.97986 7.00147 7.02969 7.59829 8.44408 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.048436 B = 0.003388 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.942687 B = 8262.403711 C = 8463.592507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.615 5.615 3 C 0.692 3.308 4 O -0.624 6.624 5 N -0.656 5.656 6 C 0.039 3.961 7 C -0.119 4.119 8 C -0.157 4.157 9 C 0.066 3.934 10 C -0.498 4.498 11 H 0.071 0.929 12 C 0.027 3.973 13 N -0.842 5.842 14 Si 0.988 3.012 15 H -0.261 1.261 16 H -0.262 1.262 17 H -0.270 1.270 18 C -0.219 4.219 19 C -0.098 4.098 20 C 0.122 3.878 21 C -0.005 4.005 22 N -0.632 5.632 23 C 0.003 3.997 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.413 0.587 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.284 0.716 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.340 0.660 37 H 0.100 0.900 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.395 -15.083 -3.033 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.352 5.352 3 C 0.394 3.606 4 O -0.504 6.504 5 N -0.306 5.306 6 C -0.056 4.056 7 C -0.139 4.139 8 C -0.177 4.177 9 C 0.064 3.936 10 C -0.529 4.529 11 H 0.089 0.911 12 C -0.184 4.184 13 N -0.470 5.470 14 Si 0.810 3.190 15 H -0.185 1.185 16 H -0.186 1.186 17 H -0.195 1.195 18 C -0.239 4.239 19 C -0.118 4.118 20 C 0.016 3.984 21 C -0.137 4.137 22 N -0.259 5.259 23 C -0.128 4.128 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.252 0.748 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.154 0.846 37 H 0.118 0.882 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.827 -15.321 -2.660 18.395 hybrid contribution -0.597 0.951 -0.003 1.123 sum -10.425 -14.370 -2.663 17.952 Atomic orbital electron populations 1.22055 0.77184 1.04735 1.03491 1.46977 1.07677 1.03139 1.77408 1.16197 0.85063 0.81346 0.77996 1.90880 1.13930 1.86501 1.59087 1.42041 1.09974 1.02388 1.76167 1.17125 0.96013 0.86271 1.06153 1.20520 1.00616 0.93327 0.99447 1.21165 0.94839 0.97770 1.03927 1.18026 0.91605 0.92876 0.91090 1.19731 1.27119 1.04552 1.01494 0.91065 1.26720 0.95803 1.01398 0.94492 1.69829 1.32741 1.38254 1.06184 0.85060 0.78304 0.76684 0.78996 1.18501 1.18646 1.19517 1.20922 1.00210 0.93821 1.08990 1.20515 0.95396 0.96429 0.99502 1.22562 0.97273 0.80486 0.98039 1.24107 1.02843 0.90159 0.96546 1.67210 1.44707 1.08948 1.05009 1.24088 1.00932 0.90268 0.97502 0.90876 0.90295 0.88194 0.74802 0.85653 0.86183 0.90521 0.88763 0.87704 0.88784 0.90426 0.88886 0.84572 0.88194 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 8.91 127.77 1.14 2.01 16 2 N -0.62 -14.80 3.11 -839.63 -2.61 -17.42 16 3 C 0.69 24.67 8.11 179.06 1.45 26.12 16 4 O -0.62 -28.76 13.27 -3.99 -0.05 -28.81 16 5 N -0.66 -22.52 5.18 -316.78 -1.64 -24.16 16 6 C 0.04 1.72 6.31 38.57 0.24 1.96 16 7 C -0.12 -5.37 9.90 22.14 0.22 -5.15 16 8 C -0.16 -8.28 8.62 22.48 0.19 -8.08 16 9 C 0.07 3.73 5.55 -21.27 -0.12 3.62 16 10 C -0.50 -27.87 9.02 23.39 0.21 -27.66 16 11 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 12 C 0.03 1.43 5.42 85.24 0.46 1.89 16 13 N -0.84 -44.92 10.60 21.82 0.23 -44.69 16 14 Si 0.99 39.77 29.56 68.60 2.03 41.80 16 15 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 16 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 17 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 18 C -0.22 -11.78 9.74 22.48 0.22 -11.56 16 19 C -0.10 -4.92 8.61 22.13 0.19 -4.73 16 20 C 0.12 2.79 4.55 45.45 0.21 2.99 16 21 C 0.00 -0.09 8.18 83.57 0.68 0.60 16 22 N -0.63 -9.95 8.71 -542.02 -4.72 -14.68 16 23 C 0.00 0.05 8.04 83.57 0.67 0.72 16 24 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.08 0.92 6.30 -2.39 -0.02 0.91 16 26 H 0.10 0.72 6.19 -2.39 -0.01 0.70 16 27 H 0.41 10.41 6.51 -92.71 -0.60 9.80 16 28 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 29 H 0.12 6.56 6.13 -2.91 -0.02 6.54 16 30 H 0.28 13.72 8.30 -92.71 -0.77 12.95 16 31 H 0.09 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.11 5.30 6.22 -2.91 -0.02 5.28 16 33 H 0.09 2.90 7.28 -2.39 -0.02 2.89 16 34 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.09 1.13 6.97 -2.39 -0.02 1.11 16 36 H 0.34 3.47 8.91 -89.69 -0.80 2.67 16 37 H 0.10 0.97 6.57 -2.39 -0.02 0.95 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 Total: -1.00 -71.72 310.47 -1.29 -73.01 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.29 Total: 32.22 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 5.77 Total: -17.27 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -8.75 Total: -100.95 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.05 Total: -28.81 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -71.72 -1.29 -73.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334832960.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.458 kcal (2) G-P(sol) polarization free energy of solvation -71.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds