Wall clock time and date at job start Mon Mar 30 2020 01:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46829 * 2 1 4 4 C 1.50694 * 109.47089 * 119.99917 * 2 1 3 5 5 H 1.08004 * 120.00263 * 119.99760 * 4 2 1 6 6 C 1.37880 * 120.00352 * 300.00088 * 4 2 1 7 7 N 1.31518 * 119.99476 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00344 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47411 * 89.99803 * 8 6 4 10 10 H 1.48499 * 109.46901 * 209.99834 * 8 6 4 11 11 H 1.48499 * 109.46920 * 329.99715 * 8 6 4 12 12 N 1.46500 * 109.46700 * 240.00064 * 2 1 3 13 13 C 1.34773 * 120.00177 * 85.00292 * 12 2 1 14 14 O 1.21595 * 120.00282 * 359.97438 * 13 12 2 15 15 N 1.34775 * 120.00218 * 179.97438 * 13 12 2 16 16 C 1.40194 * 120.00403 * 185.31333 * 15 13 12 17 17 C 1.38856 * 120.15902 * 213.14610 * 16 15 13 18 18 C 1.37789 * 120.15920 * 180.02562 * 17 16 15 19 19 C 1.39660 * 120.37141 * 0.02562 * 18 17 16 20 20 C 1.38579 * 119.14688 * 359.97438 * 19 18 17 21 21 C 1.38157 * 120.53635 * 0.02562 * 20 19 18 22 22 C 1.51230 * 108.55923 * 179.97438 * 20 19 18 23 23 C 1.53735 * 104.58539 * 0.02562 * 22 20 19 24 24 N 1.39850 * 129.25036 * 179.97438 * 19 18 17 25 25 H 1.08997 * 109.47157 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47177 * 300.00342 * 1 2 3 27 27 H 1.08998 * 109.47203 * 59.99507 * 1 2 3 28 28 H 0.97004 * 119.99360 * 179.97438 * 7 6 4 29 29 H 0.96996 * 119.99738 * 264.99510 * 12 2 1 30 30 H 0.96996 * 119.99938 * 5.31612 * 15 13 12 31 31 H 1.08001 * 119.91696 * 0.03556 * 17 16 15 32 32 H 1.07997 * 119.81077 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.95011 * 179.97438 * 21 20 19 34 34 H 1.09009 * 110.41217 * 118.77758 * 22 20 19 35 35 H 1.09000 * 110.41832 * 241.22452 * 22 20 19 36 36 H 1.08998 * 110.29811 * 241.06666 * 23 22 20 37 37 H 1.08998 * 110.30235 * 118.92854 * 23 22 20 38 38 H 0.97002 * 124.97528 * 359.75590 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9489 5.1122 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8575 1.1614 -2.4119 15 7 2.5967 -0.6535 -3.4575 16 6 2.8366 0.0686 -4.6350 17 6 2.6251 -0.5246 -5.8725 18 6 2.8614 0.1849 -7.0298 19 6 3.3154 1.5042 -6.9689 20 6 3.5242 2.0897 -5.7303 21 6 3.2876 1.3793 -4.5693 22 6 4.0105 3.5058 -5.9432 23 6 4.0584 3.6732 -7.4706 24 7 3.6124 2.3868 -8.0123 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.7089 1.1614 3.4844 29 1 2.2490 -1.6317 -1.1526 30 1 2.7542 -1.6103 -3.4348 31 1 2.2743 -1.5446 -5.9280 32 1 2.6946 -0.2819 -7.9892 33 1 3.4540 1.8448 -3.6090 34 1 3.3111 4.2178 -5.5048 35 1 5.0044 3.6350 -5.5148 36 1 5.0764 3.8876 -7.7957 37 1 3.3845 4.4701 -7.7851 38 1 3.5381 2.1768 -8.9564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335633141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:41 Heat of formation + Delta-G solvation = 6.209678 kcal Electronic energy + Delta-G solvation = -20560.798630 eV Core-core repulsion = 17403.053790 eV Total energy + Delta-G solvation = -3157.744840 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41404 -39.23936 -36.55520 -34.73144 -33.47679 -32.30651 -31.74538 -29.14745 -28.66390 -27.46246 -25.22033 -23.29969 -22.01277 -21.53360 -20.62255 -19.74310 -18.20498 -17.29393 -16.80200 -15.86799 -15.60628 -15.53509 -14.95626 -14.63486 -14.00740 -13.74450 -13.50666 -13.07776 -12.65080 -12.57233 -12.47468 -12.34200 -12.10750 -11.93328 -11.70769 -11.05356 -11.03206 -10.94340 -10.71865 -10.40737 -10.25548 -10.20313 -9.34565 -9.04136 -8.96070 -8.54212 -8.48637 -7.88651 -6.88322 -6.10452 -4.19393 1.57483 1.76356 3.25745 3.27791 3.33103 3.35789 3.47784 3.77864 4.18376 4.34430 4.65806 4.70679 5.03643 5.08631 5.21459 5.22533 5.28909 5.45192 5.58142 5.69742 5.88125 5.94682 6.16331 6.24941 6.51269 6.66853 6.75158 6.85890 7.00624 7.02520 7.18344 7.32900 7.44736 7.53051 7.65391 7.84315 7.88919 8.06284 8.18657 8.77649 8.92188 9.32911 9.50346 10.95631 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.036338 B = 0.003468 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.365119 B = 8070.779744 C = 8385.594922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.721 5.721 13 C 0.692 3.308 14 O -0.584 6.584 15 N -0.695 5.695 16 C 0.133 3.867 17 C -0.110 4.110 18 C -0.162 4.162 19 C 0.167 3.833 20 C -0.152 4.152 21 C -0.062 4.062 22 C -0.084 4.084 23 C 0.123 3.877 24 N -0.753 5.753 25 H 0.025 0.975 26 H 0.090 0.910 27 H 0.015 0.985 28 H 0.264 0.736 29 H 0.385 0.615 30 H 0.400 0.600 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.752 -0.399 -18.898 19.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.067 0.933 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.372 5.372 13 C 0.392 3.608 14 O -0.462 6.462 15 N -0.343 5.343 16 C 0.036 3.964 17 C -0.132 4.132 18 C -0.185 4.185 19 C 0.065 3.935 20 C -0.157 4.157 21 C -0.083 4.083 22 C -0.122 4.122 23 C -0.002 4.002 24 N -0.388 5.388 25 H 0.044 0.956 26 H 0.108 0.892 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.217 0.783 30 H 0.234 0.766 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.155 0.845 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 5.419 0.964 -18.663 19.458 hybrid contribution 0.346 -1.509 0.466 1.617 sum 5.765 -0.545 -18.197 19.096 Atomic orbital electron populations 1.22104 0.98626 0.99053 1.00913 1.18655 0.90812 0.93737 0.78920 0.93308 1.21220 1.32405 1.13249 0.90288 0.92087 1.24884 0.94833 0.94997 0.99021 1.69915 1.35840 1.22451 1.23855 0.86435 0.78584 0.79805 0.82175 1.20570 1.21092 1.19876 1.45843 1.68904 1.13350 1.09145 1.16171 0.78555 0.85581 0.80446 1.90878 1.56739 1.14433 1.84169 1.42741 1.70547 1.11060 1.09961 1.17135 1.01560 0.92707 0.84970 1.20445 1.02058 1.00213 0.90482 1.19969 1.08052 0.92537 0.97990 1.18282 0.96241 0.90824 0.88163 1.19686 1.07498 0.96373 0.92128 1.20421 0.96577 0.93239 0.98099 1.21010 1.02123 0.94296 0.94745 1.21699 0.98905 0.86023 0.93583 1.44626 1.75915 1.12428 1.05854 0.95558 0.89163 0.96567 0.92583 0.78255 0.76564 0.85883 0.86572 0.84488 0.89737 0.89944 0.92037 0.91989 0.75571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.26 37.16 0.34 -3.41 16 2 C 0.28 7.23 2.56 -69.08 -0.18 7.05 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.98 11.32 55.43 0.63 -24.35 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 N -0.72 -15.25 5.07 -59.81 -0.30 -15.55 16 13 C 0.69 14.44 8.27 -86.92 -0.72 13.72 16 14 O -0.58 -14.47 13.70 5.28 0.07 -14.40 16 15 N -0.69 -11.20 5.36 -14.19 -0.08 -11.27 16 16 C 0.13 2.13 6.29 -83.61 -0.53 1.60 16 17 C -0.11 -1.45 9.94 -39.52 -0.39 -1.84 16 18 C -0.16 -2.00 10.07 -39.22 -0.39 -2.39 16 19 C 0.17 2.18 7.03 -83.54 -0.59 1.59 16 20 C -0.15 -2.22 6.22 -104.27 -0.65 -2.87 16 21 C -0.06 -1.06 8.66 -39.41 -0.34 -1.40 16 22 C -0.08 -0.96 6.94 -27.24 -0.19 -1.15 16 23 C 0.12 1.11 7.96 -3.64 -0.03 1.08 16 24 N -0.75 -7.65 6.54 -58.06 -0.38 -8.03 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.39 6.95 8.56 -40.82 -0.35 6.60 16 30 H 0.40 4.98 8.84 -40.82 -0.36 4.62 16 31 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.14 2.67 6.41 -52.49 -0.34 2.33 16 34 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.41 3.12 8.96 -40.82 -0.37 2.75 16 LS Contribution 317.51 15.07 4.78 4.78 Total: -1.00 -32.24 317.51 -9.40 -41.64 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.04 Total: 12.36 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -4.06 Total: -0.82 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.13 Total: -59.20 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: 0.07 Total: -14.40 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.24 -9.40 -41.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335633141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.845 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds