Wall clock time and date at job start Mon Mar 30 2020 01:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46829 * 2 1 4 4 C 1.50694 * 109.47089 * 119.99917 * 2 1 3 5 5 H 1.08004 * 120.00263 * 119.99760 * 4 2 1 6 6 C 1.37880 * 120.00352 * 300.00088 * 4 2 1 7 7 N 1.31518 * 119.99476 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00344 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47411 * 89.99803 * 8 6 4 10 10 H 1.48499 * 109.46901 * 209.99834 * 8 6 4 11 11 H 1.48499 * 109.46920 * 329.99715 * 8 6 4 12 12 N 1.46500 * 109.46700 * 240.00064 * 2 1 3 13 13 C 1.34773 * 120.00177 * 85.00292 * 12 2 1 14 14 O 1.21595 * 120.00282 * 359.97438 * 13 12 2 15 15 N 1.34775 * 120.00218 * 179.97438 * 13 12 2 16 16 C 1.40194 * 120.00403 * 185.31333 * 15 13 12 17 17 C 1.38856 * 120.15902 * 213.14610 * 16 15 13 18 18 C 1.37789 * 120.15920 * 180.02562 * 17 16 15 19 19 C 1.39660 * 120.37141 * 0.02562 * 18 17 16 20 20 C 1.38579 * 119.14688 * 359.97438 * 19 18 17 21 21 C 1.38157 * 120.53635 * 0.02562 * 20 19 18 22 22 C 1.51230 * 108.55923 * 179.97438 * 20 19 18 23 23 C 1.53735 * 104.58539 * 0.02562 * 22 20 19 24 24 N 1.39850 * 129.25036 * 179.97438 * 19 18 17 25 25 H 1.08997 * 109.47157 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47177 * 300.00342 * 1 2 3 27 27 H 1.08998 * 109.47203 * 59.99507 * 1 2 3 28 28 H 0.97004 * 119.99360 * 179.97438 * 7 6 4 29 29 H 0.96996 * 119.99738 * 264.99510 * 12 2 1 30 30 H 0.96996 * 119.99938 * 5.31612 * 15 13 12 31 31 H 1.08001 * 119.91696 * 0.03556 * 17 16 15 32 32 H 1.07997 * 119.81077 * 180.02562 * 18 17 16 33 33 H 1.07998 * 119.95011 * 179.97438 * 21 20 19 34 34 H 1.09009 * 110.41217 * 118.77758 * 22 20 19 35 35 H 1.09000 * 110.41832 * 241.22452 * 22 20 19 36 36 H 1.08998 * 110.29811 * 241.06666 * 23 22 20 37 37 H 1.08998 * 110.30235 * 118.92854 * 23 22 20 38 38 H 0.97002 * 124.97528 * 359.75590 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9489 5.1122 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3571 14 8 1.8575 1.1614 -2.4119 15 7 2.5967 -0.6535 -3.4575 16 6 2.8366 0.0686 -4.6350 17 6 2.6251 -0.5246 -5.8725 18 6 2.8614 0.1849 -7.0298 19 6 3.3154 1.5042 -6.9689 20 6 3.5242 2.0897 -5.7303 21 6 3.2876 1.3793 -4.5693 22 6 4.0105 3.5058 -5.9432 23 6 4.0584 3.6732 -7.4706 24 7 3.6124 2.3868 -8.0123 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.7089 1.1614 3.4844 29 1 2.2490 -1.6317 -1.1526 30 1 2.7542 -1.6103 -3.4348 31 1 2.2743 -1.5446 -5.9280 32 1 2.6946 -0.2819 -7.9892 33 1 3.4540 1.8448 -3.6090 34 1 3.3111 4.2178 -5.5048 35 1 5.0044 3.6350 -5.5148 36 1 5.0764 3.8876 -7.7957 37 1 3.3845 4.4701 -7.7851 38 1 3.5381 2.1768 -8.9564 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335633141.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:41 Heat of formation + Delta-G solvation = -16.865770 kcal Electronic energy + Delta-G solvation = -20561.799256 eV Core-core repulsion = 17403.053790 eV Total energy + Delta-G solvation = -3158.745467 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.64051 -40.61140 -37.83141 -36.54724 -34.90995 -34.15246 -32.78154 -30.90727 -29.65673 -28.74345 -27.32040 -24.50840 -23.30490 -22.65236 -21.96304 -21.48381 -19.81846 -18.52156 -18.08004 -17.70723 -16.84816 -16.58593 -16.39412 -16.14925 -15.72303 -15.20638 -14.69749 -14.45845 -14.37351 -13.89336 -13.67754 -13.51530 -13.43753 -12.95982 -12.94863 -12.89229 -12.77561 -12.73609 -12.25415 -12.11474 -12.03882 -11.58440 -11.09556 -11.05076 -10.59412 -10.16436 -9.70946 -9.60422 -8.16537 -7.91499 -6.33803 0.50541 0.61657 1.46276 1.47177 1.57855 1.87637 2.25367 2.43527 2.60404 2.97798 3.14183 3.48860 3.80049 3.83822 4.20360 4.28376 4.38005 4.52895 4.63824 4.73314 4.78574 4.89602 4.94802 5.08439 5.10631 5.14165 5.19801 5.35633 5.46022 5.56660 5.60432 5.66588 5.70247 5.86870 5.91970 6.10831 6.33316 6.35983 6.74334 7.09827 7.30707 7.35973 7.75365 8.90299 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.036338 B = 0.003468 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.365119 B = 8070.779744 C = 8385.594922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H -0.003 1.003 4 C -0.546 4.546 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.716 5.716 13 C 0.690 3.310 14 O -0.630 6.630 15 N -0.673 5.673 16 C 0.099 3.901 17 C -0.098 4.098 18 C -0.160 4.160 19 C 0.171 3.829 20 C -0.177 4.177 21 C -0.089 4.089 22 C -0.091 4.091 23 C 0.125 3.875 24 N -0.743 5.743 25 H 0.041 0.959 26 H 0.067 0.933 27 H 0.009 0.991 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.419 0.581 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 -2.252 -21.062 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.015 0.985 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.183 1.183 12 N -0.369 5.369 13 C 0.391 3.609 14 O -0.511 6.511 15 N -0.323 5.323 16 C 0.003 3.997 17 C -0.119 4.119 18 C -0.183 4.183 19 C 0.067 3.933 20 C -0.183 4.183 21 C -0.111 4.111 22 C -0.128 4.128 23 C 0.000 4.000 24 N -0.378 5.378 25 H 0.060 0.940 26 H 0.086 0.914 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.238 0.762 30 H 0.257 0.743 31 H 0.172 0.828 32 H 0.169 0.831 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 6.210 -0.936 -20.916 21.839 hybrid contribution 0.143 -0.848 0.986 1.308 sum 6.353 -1.784 -19.931 20.994 Atomic orbital electron populations 1.21920 0.98465 0.99448 0.99431 1.18234 0.90872 0.91621 0.80760 0.98461 1.21538 1.32625 1.13647 0.90652 0.90739 1.25820 0.94858 0.95621 1.02344 1.70068 1.36961 1.23951 1.24633 0.85301 0.77710 0.79179 0.77863 1.20410 1.20931 1.18283 1.45425 1.69186 1.13994 1.08257 1.16293 0.78354 0.85031 0.81243 1.90852 1.58565 1.16638 1.85008 1.42365 1.69291 1.11845 1.08783 1.17392 1.03771 0.92817 0.85686 1.20752 1.00466 1.01448 0.89205 1.20390 1.06600 0.92149 0.99159 1.18501 0.95101 0.91471 0.88252 1.19960 1.08132 0.97980 0.92186 1.20293 0.98940 0.94425 0.97397 1.21131 1.02113 0.92566 0.96977 1.21824 1.00785 0.85930 0.91425 1.44693 1.74870 1.12110 1.06129 0.93997 0.91398 0.97213 0.92525 0.76192 0.74288 0.82772 0.83072 0.88488 0.90459 0.89422 0.89621 0.90279 0.73775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.99 9.26 71.98 0.67 -6.32 16 2 C 0.29 15.42 2.56 44.24 0.11 15.54 16 3 H 0.00 -0.16 7.58 -2.38 -0.02 -0.18 16 4 C -0.55 -29.28 8.73 25.60 0.22 -29.06 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 6 C 0.01 0.74 5.30 84.65 0.45 1.18 16 7 N -0.92 -53.28 11.32 21.45 0.24 -53.04 16 8 Si 0.98 42.23 29.54 68.60 2.03 44.26 16 9 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 12 N -0.72 -30.89 5.07 -461.41 -2.34 -33.23 16 13 C 0.69 29.87 8.27 179.06 1.48 31.35 16 14 O -0.63 -33.25 13.70 -4.02 -0.06 -33.31 16 15 N -0.67 -21.76 5.36 -317.06 -1.70 -23.46 16 16 C 0.10 3.18 6.29 38.08 0.24 3.42 16 17 C -0.10 -2.33 9.94 22.31 0.22 -2.11 16 18 C -0.16 -3.44 10.07 22.51 0.23 -3.21 16 19 C 0.17 4.10 7.03 38.29 0.27 4.37 16 20 C -0.18 -5.23 6.22 -19.63 -0.12 -5.35 16 21 C -0.09 -3.21 8.66 22.38 0.19 -3.01 16 22 C -0.09 -2.05 6.94 30.26 0.21 -1.84 16 23 C 0.12 1.94 7.96 86.62 0.69 2.63 16 24 N -0.74 -12.79 6.54 -337.61 -2.21 -14.99 16 25 H 0.04 1.99 8.14 -2.39 -0.02 1.98 16 26 H 0.07 3.86 6.07 -2.38 -0.01 3.84 16 27 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.40 14.32 8.56 -92.71 -0.79 13.53 16 30 H 0.42 9.91 8.84 -92.71 -0.82 9.09 16 31 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 33 H 0.10 4.19 6.41 -2.91 -0.02 4.17 16 34 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 35 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.42 4.83 8.96 -92.71 -0.83 4.00 16 Total: -1.00 -73.45 317.51 -0.50 -73.95 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -1.33 Total: 32.24 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 4.86 Total: 7.58 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -6.01 Total: -124.72 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -0.06 Total: -33.31 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -73.45 -0.50 -73.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335633141.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.086 kcal (2) G-P(sol) polarization free energy of solvation -73.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds