Wall clock time and date at job start Mon Mar 30 2020 01:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47910 * 110.99581 * 2 1 4 4 C 1.54586 * 102.62971 * 149.22419 * 3 2 1 5 5 C 1.51606 * 102.85057 * 334.47962 * 4 3 2 6 6 C 1.37999 * 131.47160 * 196.12750 * 5 4 3 7 7 C 1.38164 * 120.16733 * 179.08993 * 6 5 4 8 8 C 1.38940 * 119.81647 * 0.50365 * 7 6 5 9 9 N 1.39946 * 119.94249 * 179.90835 * 8 7 6 10 10 C 1.34770 * 119.99863 * 324.63730 * 9 8 7 11 11 O 1.21589 * 120.00569 * 4.61868 * 10 9 8 12 12 N 1.34784 * 120.00231 * 184.62119 * 10 9 8 13 13 C 1.46490 * 120.00311 * 179.97438 * 12 10 9 14 14 C 1.50698 * 109.47270 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00185 * 0.02562 * 14 13 12 16 16 C 1.37883 * 120.00159 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99969 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 120.00066 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47094 * 89.99878 * 18 16 14 20 20 H 1.48498 * 109.47552 * 210.00335 * 18 16 14 21 21 H 1.48504 * 109.47181 * 330.00333 * 18 16 14 22 22 C 1.38530 * 120.11606 * 359.63153 * 8 7 6 23 23 C 1.39030 * 107.93420 * 15.78086 * 5 4 3 24 24 H 1.09002 * 109.47083 * 300.05240 * 1 2 3 25 25 H 1.08992 * 109.47484 * 60.05754 * 1 2 3 26 26 H 1.09000 * 109.46740 * 180.02562 * 1 2 3 27 27 H 1.08998 * 110.78044 * 30.93455 * 3 2 1 28 28 H 1.09005 * 110.77632 * 267.50280 * 3 2 1 29 29 H 1.09004 * 110.73710 * 216.14040 * 4 3 2 30 30 H 1.09004 * 110.89876 * 92.88920 * 4 3 2 31 31 H 1.08000 * 119.91417 * 359.31792 * 6 5 4 32 32 H 1.08002 * 120.09119 * 180.25321 * 7 6 5 33 33 H 0.97002 * 120.00288 * 144.91349 * 9 8 7 34 34 H 0.97001 * 119.99756 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.47384 * 300.00154 * 13 12 10 36 36 H 1.08998 * 109.47151 * 59.99770 * 13 12 10 37 37 H 0.96998 * 120.00031 * 180.02562 * 17 16 14 38 38 H 1.08003 * 119.93217 * 180.23345 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3809 0.0000 4 6 3.3301 1.2321 0.7718 5 6 3.0838 0.0114 1.6366 6 6 3.7472 -0.4715 2.7461 7 6 3.3032 -1.6182 3.3760 8 6 2.1920 -2.2911 2.8831 9 7 1.7412 -3.4540 3.5179 10 6 2.6271 -4.3094 4.0656 11 8 3.8105 -4.0309 4.0827 12 7 2.2012 -5.4737 4.5944 13 6 3.1641 -6.4037 5.1892 14 6 2.4366 -7.6188 5.7043 15 1 1.3643 -7.6912 5.5988 16 6 3.1401 -8.6381 6.3104 17 7 2.5053 -9.6987 6.7595 18 14 4.9950 -8.5132 6.4923 19 1 5.3226 -7.8548 7.7824 20 1 5.5877 -9.8746 6.4667 21 1 5.5493 -7.7109 5.3723 22 6 1.5262 -1.8098 1.7678 23 6 1.9710 -0.6525 1.1329 24 1 -0.3633 0.5147 0.8895 25 1 -0.3634 0.5129 -0.8904 26 1 -0.3633 -1.0277 0.0005 27 1 1.3215 2.0551 0.5239 28 1 2.1790 1.7260 -1.0182 29 1 3.5187 2.1106 1.3890 30 1 4.1597 1.0584 0.0864 31 1 4.6134 0.0504 3.1252 32 1 3.8209 -1.9928 4.2468 33 1 0.7914 -3.6464 3.5603 34 1 1.2571 -5.6958 4.5811 35 1 3.8900 -6.7071 4.4347 36 1 3.6810 -5.9133 6.0141 37 1 3.0001 -10.4156 7.1862 38 1 0.6605 -2.3331 1.3894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335738717.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:48 Heat of formation + Delta-G solvation = 15.570724 kcal Electronic energy + Delta-G solvation = -20361.480673 eV Core-core repulsion = 17204.141758 eV Total energy + Delta-G solvation = -3157.338915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91206 -39.69465 -36.93261 -34.42263 -34.18054 -32.55642 -32.12044 -29.92379 -28.65482 -27.22321 -25.92302 -23.13565 -22.63638 -21.26326 -21.20906 -20.10477 -18.38003 -17.37041 -16.49749 -16.23651 -15.99011 -15.52163 -14.97839 -14.72240 -14.38244 -14.24576 -13.81377 -13.49696 -13.27025 -13.23184 -12.91621 -12.46103 -12.32690 -12.28152 -12.05151 -11.71565 -11.57105 -11.03749 -10.99047 -10.81010 -10.43317 -9.98552 -9.75588 -9.52320 -9.40643 -8.80416 -8.38505 -8.11557 -7.58080 -6.22983 -4.25541 1.36444 1.44211 2.99044 3.26764 3.34014 3.42214 3.43628 3.65029 3.93725 4.32508 4.41846 4.46714 4.75549 4.82586 4.88506 5.04170 5.11998 5.12578 5.29694 5.34127 5.40383 5.52131 5.55632 5.64809 5.67961 5.75583 6.20532 6.31180 6.42990 6.59944 6.71664 6.78485 6.84899 7.06240 7.16022 7.25180 7.29979 7.47181 8.22471 8.56472 8.75599 9.03857 9.36971 10.88901 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.042099 B = 0.003290 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.937845 B = 8508.347910 C = 9020.378230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.479 5.479 3 C 0.046 3.954 4 C -0.080 4.080 5 C -0.167 4.167 6 C -0.063 4.063 7 C -0.140 4.140 8 C 0.203 3.797 9 N -0.693 5.693 10 C 0.694 3.306 11 O -0.584 6.584 12 N -0.715 5.715 13 C 0.237 3.763 14 C -0.544 4.544 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.170 4.170 23 C 0.107 3.893 24 H 0.038 0.962 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.146 0.854 33 H 0.404 0.596 34 H 0.394 0.606 35 H 0.026 0.974 36 H 0.021 0.979 37 H 0.268 0.732 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.105 22.234 -11.740 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.193 5.193 3 C -0.080 4.080 4 C -0.117 4.117 5 C -0.170 4.170 6 C -0.082 4.082 7 C -0.161 4.161 8 C 0.106 3.894 9 N -0.341 5.341 10 C 0.394 3.606 11 O -0.462 6.462 12 N -0.367 5.367 13 C 0.115 3.885 14 C -0.582 4.582 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.529 5.529 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.184 1.184 22 C -0.194 4.194 23 C 0.009 3.991 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.141 0.859 32 H 0.163 0.837 33 H 0.239 0.761 34 H 0.228 0.772 35 H 0.044 0.956 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.881 21.938 -12.098 25.217 hybrid contribution -0.324 -0.124 0.694 0.776 sum -3.205 21.814 -11.404 24.823 Atomic orbital electron populations 1.22549 0.85983 1.03128 1.01343 1.60599 1.09021 1.14467 1.35256 1.23260 0.95498 0.87846 1.01417 1.21216 0.97505 0.95890 0.97077 1.20402 0.99082 0.99260 0.98298 1.20263 0.98623 0.95393 0.93939 1.21284 0.97980 0.94451 1.02395 1.17128 0.95216 0.85859 0.91165 1.42718 1.09856 1.21628 1.59880 1.16095 0.84939 0.80722 0.78857 1.90872 1.15049 1.76776 1.63459 1.45442 1.12134 1.17805 1.61318 1.19425 0.88632 0.87397 0.93045 1.21069 0.96154 1.01197 1.39816 0.90244 1.24776 0.98839 0.94698 0.94260 1.69874 1.36386 1.07934 1.38734 0.86813 0.85315 0.77824 0.79729 1.19805 1.20885 1.18393 1.19979 1.04437 0.98632 0.96371 1.19203 0.95873 0.94912 0.89123 0.94336 0.90772 0.90662 0.92289 0.88908 0.90341 0.89752 0.85926 0.83659 0.76068 0.77211 0.95647 0.96099 0.92210 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.16 60.07 0.55 0.68 16 2 N -0.48 -5.05 5.31 -176.86 -0.94 -5.99 16 3 C 0.05 0.37 6.91 -2.43 -0.02 0.35 16 4 C -0.08 -0.71 7.04 -26.60 -0.19 -0.90 16 5 C -0.17 -2.05 6.23 -103.97 -0.65 -2.70 16 6 C -0.06 -0.83 10.02 -39.70 -0.40 -1.23 16 7 C -0.14 -2.19 8.70 -39.35 -0.34 -2.53 16 8 C 0.20 3.06 6.28 -83.79 -0.53 2.53 16 9 N -0.69 -10.42 5.34 -14.29 -0.08 -10.50 16 10 C 0.69 13.57 8.41 -86.92 -0.73 12.84 16 11 O -0.58 -13.44 13.78 5.29 0.07 -13.37 16 12 N -0.72 -14.44 5.55 -66.42 -0.37 -14.80 16 13 C 0.24 5.81 4.50 -5.20 -0.02 5.79 16 14 C -0.54 -14.83 9.83 -34.44 -0.34 -15.16 16 15 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 17 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 18 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 22 C -0.17 -2.23 9.44 -39.08 -0.37 -2.60 16 23 C 0.11 1.35 5.95 -83.42 -0.50 0.85 16 24 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.60 7.30 -51.93 -0.38 0.22 16 27 H 0.06 0.41 7.84 -51.93 -0.41 0.00 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.15 2.56 6.23 -52.49 -0.33 2.23 16 33 H 0.40 4.64 8.84 -40.82 -0.36 4.28 16 34 H 0.39 6.88 8.34 -40.82 -0.34 6.54 16 35 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 36 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.12 1.36 7.37 -52.48 -0.39 0.98 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -33.00 315.65 -9.15 -42.16 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.08 Total: 6.61 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -3.62 Total: 0.04 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.61 Total: -56.90 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.07 Total: -13.37 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.00 -9.15 -42.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335738717.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.729 kcal (2) G-P(sol) polarization free energy of solvation -33.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds