Wall clock time and date at job start Mon Mar 30 2020 01:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46925 * 2 1 4 4 C 1.46493 * 119.99860 * 274.93323 * 3 2 1 5 5 C 1.50700 * 109.47296 * 262.94469 * 4 3 2 6 6 H 1.07993 * 119.99881 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99879 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00069 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99514 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47101 * 60.00298 * 9 7 5 11 11 H 1.48503 * 109.46623 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47397 * 299.99728 * 9 7 5 13 13 C 1.34779 * 119.99821 * 94.93472 * 3 2 1 14 14 O 1.21485 * 119.99803 * 3.48710 * 13 3 2 15 15 C 1.48450 * 119.99841 * 183.48602 * 13 3 2 16 16 C 1.39535 * 120.55078 * 173.45462 * 15 13 3 17 17 C 1.38755 * 118.26539 * 180.02562 * 16 15 13 18 18 N 1.32202 * 119.15103 * 359.75180 * 17 16 15 19 19 C 1.31886 * 121.03253 * 0.50561 * 18 17 16 20 20 C 1.50694 * 119.04494 * 179.75750 * 19 18 17 21 21 C 1.53007 * 117.49728 * 59.72889 * 20 19 18 22 22 C 1.53006 * 60.03203 * 252.48029 * 21 20 19 23 23 N 1.31588 * 121.91381 * 359.48183 * 19 18 17 24 24 H 1.09003 * 109.46980 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47070 * 300.00104 * 1 2 3 26 26 H 1.09000 * 109.47194 * 59.99937 * 1 2 3 27 27 H 1.08994 * 109.46935 * 240.00114 * 2 1 3 28 28 H 1.09000 * 109.47194 * 120.00063 * 2 1 3 29 29 H 1.09003 * 109.47528 * 22.94834 * 4 3 2 30 30 H 1.09002 * 109.46789 * 142.94582 * 4 3 2 31 31 H 0.97000 * 120.00071 * 180.02562 * 8 7 5 32 32 H 1.08004 * 120.86570 * 0.04513 * 16 15 13 33 33 H 1.08009 * 120.42378 * 180.02562 * 17 16 15 34 34 H 1.08996 * 115.55366 * 205.40346 * 20 19 18 35 35 H 1.09000 * 117.49767 * 359.97438 * 21 20 19 36 36 H 1.08995 * 117.49821 * 144.97597 * 21 20 19 37 37 H 1.08991 * 117.50194 * 107.50028 * 22 21 20 38 38 H 1.09004 * 117.49155 * 252.52569 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1596 2.1082 -1.2640 5 6 3.5899 2.0293 -1.7318 6 1 4.3207 1.4918 -1.1459 7 6 3.9657 2.6442 -2.9072 8 7 3.0761 3.3000 -3.6199 9 14 5.7390 2.5469 -3.4866 10 1 6.1163 1.1250 -3.6891 11 1 5.8821 3.2837 -4.7680 12 1 6.6280 3.1542 -2.4639 13 6 2.3376 1.9832 1.1629 14 8 2.2810 1.3606 2.2046 15 6 2.7583 3.4068 1.1708 16 6 2.9600 4.0800 2.3762 17 6 3.3525 5.4101 2.3283 18 7 3.5254 5.9885 1.1522 19 6 3.3214 5.3242 0.0312 20 6 3.5266 6.0292 -1.2847 21 6 4.9185 6.5952 -1.5733 22 6 3.7610 7.5415 -1.2482 23 7 2.9488 4.0622 0.0285 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5067 1.6625 -2.0145 30 1 1.8829 3.1520 -1.1156 31 1 3.3404 3.7323 -4.4470 32 1 2.8148 3.5789 3.3219 33 1 3.5188 5.9645 3.2402 34 1 2.9622 5.6277 -2.1262 35 1 5.6856 6.4580 -0.8112 36 1 5.2699 6.5656 -2.6047 37 1 3.7666 8.0267 -0.2722 38 1 3.3507 8.1342 -2.0658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351888848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:53 Heat of formation + Delta-G solvation = 58.941264 kcal Electronic energy + Delta-G solvation = -21950.470973 eV Core-core repulsion = 18795.012746 eV Total energy + Delta-G solvation = -3155.458227 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.81890 -38.85106 -36.51640 -35.36024 -33.45211 -32.54630 -31.30940 -30.27699 -26.99868 -25.28980 -24.50240 -23.02693 -22.67712 -21.94524 -20.83676 -18.76273 -17.41232 -16.86071 -16.29648 -15.49001 -15.30429 -15.13648 -14.78838 -14.41582 -14.06650 -13.90572 -13.60019 -13.28470 -12.80999 -12.35401 -11.98277 -11.83347 -11.61868 -11.34398 -11.17073 -10.92189 -10.81667 -10.52874 -10.44836 -10.24876 -10.18072 -10.06982 -10.00536 -9.71908 -9.51436 -8.84277 -8.51538 -8.10164 -7.67337 -6.01466 -4.00266 1.02756 1.42622 3.29721 3.32642 3.33628 3.40060 3.68314 4.10840 4.22292 4.42390 4.44532 4.69013 4.98463 5.26622 5.33181 5.35794 5.42246 5.48649 5.53434 5.57811 5.75206 5.84036 5.95715 6.00670 6.05996 6.20920 6.21660 6.36541 6.52077 6.58939 6.67860 6.81209 6.83143 7.35155 7.54123 7.72956 7.90300 8.24639 8.28253 8.55492 8.82620 9.00254 9.59580 11.06512 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.009981 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.649208 B = 2804.579579 C = 4371.632912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.569 5.569 4 C 0.226 3.774 5 C -0.500 4.500 6 H 0.048 0.952 7 C 0.076 3.924 8 N -0.887 5.887 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.279 1.279 13 C 0.563 3.437 14 O -0.567 6.567 15 C 0.136 3.864 16 C -0.190 4.190 17 C 0.132 3.868 18 N -0.515 5.515 19 C 0.337 3.663 20 C -0.083 4.083 21 C -0.156 4.156 22 C -0.164 4.164 23 N -0.409 5.409 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.084 0.916 31 H 0.260 0.740 32 H 0.150 0.850 33 H 0.166 0.834 34 H 0.146 0.854 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 4.275 5.884 7.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.297 5.297 4 C 0.107 3.893 5 C -0.539 4.539 6 H 0.066 0.934 7 C -0.126 4.126 8 N -0.526 5.526 9 Si 0.708 3.292 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.205 1.205 13 C 0.349 3.651 14 O -0.447 6.447 15 C -0.013 4.013 16 C -0.213 4.213 17 C -0.035 4.035 18 N -0.230 5.230 19 C 0.072 3.928 20 C -0.103 4.103 21 C -0.194 4.194 22 C -0.202 4.202 23 N -0.124 5.124 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.168 0.832 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.615 4.453 5.334 7.133 hybrid contribution 1.074 -0.576 0.349 1.268 sum -0.542 3.876 5.683 6.900 Atomic orbital electron populations 1.22105 0.96478 1.01417 1.02082 1.21380 0.93682 0.83531 1.02872 1.48340 1.59598 1.13273 1.08520 1.20161 0.97162 0.94234 0.77790 1.21170 0.94289 1.32374 1.06063 0.93372 1.24654 0.96435 0.95112 0.96364 1.69894 1.33160 1.34683 1.14910 0.86855 0.86225 0.78116 0.78001 1.20598 1.21160 1.20459 1.17812 0.78271 0.84968 0.84021 1.90670 1.56668 1.64950 1.32433 1.21726 0.94832 0.95399 0.89327 1.22814 1.01546 0.96633 1.00355 1.23060 0.92691 0.91715 0.96025 1.67973 1.15884 1.40179 0.98924 1.22395 0.90648 0.87303 0.92493 1.20727 1.01805 0.94067 0.93694 1.22847 0.91091 1.03081 1.02380 1.22995 1.02357 0.91543 1.03266 1.69299 1.08538 1.07474 1.27103 0.92171 0.92960 0.92283 0.90265 0.90633 0.95575 0.89901 0.93015 0.83216 0.81645 0.83624 0.89213 0.88457 0.87830 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.24 37.16 0.38 -2.15 16 2 C 0.11 1.99 6.18 -4.04 -0.02 1.97 16 3 N -0.57 -12.33 2.48 -175.95 -0.44 -12.77 16 4 C 0.23 5.41 4.79 -5.20 -0.02 5.39 16 5 C -0.50 -13.02 8.05 -34.44 -0.28 -13.30 16 6 H 0.05 1.32 7.81 -52.49 -0.41 0.91 16 7 C 0.08 1.97 5.46 -17.82 -0.10 1.88 16 8 N -0.89 -23.23 13.29 55.43 0.74 -22.49 16 9 Si 0.88 20.75 29.54 -169.99 -5.02 15.73 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.56 12.33 7.61 -12.05 -0.09 12.24 16 14 O -0.57 -12.74 15.93 5.38 0.09 -12.66 16 15 C 0.14 2.82 6.65 -82.64 -0.55 2.27 16 16 C -0.19 -3.22 9.72 -38.91 -0.38 -3.60 16 17 C 0.13 2.00 11.31 -17.20 -0.19 1.80 16 18 N -0.51 -9.02 9.33 -10.74 -0.10 -9.12 16 19 C 0.34 6.72 7.31 -157.30 -1.15 5.57 16 20 C -0.08 -1.55 6.23 -91.73 -0.57 -2.13 16 21 C -0.16 -2.58 10.23 -26.72 -0.27 -2.85 16 22 C -0.16 -2.43 10.01 -26.69 -0.27 -2.70 16 23 N -0.41 -8.94 5.14 -7.32 -0.04 -8.98 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 28 H 0.08 1.38 7.24 -51.93 -0.38 1.00 16 29 H 0.03 0.66 8.02 -51.93 -0.42 0.24 16 30 H 0.08 2.09 5.22 -52.01 -0.27 1.82 16 31 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 32 H 0.15 2.24 7.75 -52.48 -0.41 1.84 16 33 H 0.17 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.15 3.05 8.14 -51.93 -0.42 2.63 16 35 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.10 1.55 8.14 -51.93 -0.42 1.12 16 37 H 0.10 1.50 7.54 -51.93 -0.39 1.10 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -28.77 325.85 -8.59 -37.36 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.21 Total: 3.63 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -3.52 Total: 4.38 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.16 Total: -53.36 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.77 -8.59 -37.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351888848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.301 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds