Wall clock time and date at job start Mon Mar 30 2020 01:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46925 * 2 1 4 4 C 1.46493 * 119.99860 * 274.93323 * 3 2 1 5 5 C 1.50700 * 109.47296 * 262.94469 * 4 3 2 6 6 H 1.07993 * 119.99881 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99879 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00069 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99514 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47101 * 60.00298 * 9 7 5 11 11 H 1.48503 * 109.46623 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47397 * 299.99728 * 9 7 5 13 13 C 1.34779 * 119.99821 * 94.93472 * 3 2 1 14 14 O 1.21485 * 119.99803 * 3.48710 * 13 3 2 15 15 C 1.48450 * 119.99841 * 183.48602 * 13 3 2 16 16 C 1.39535 * 120.55078 * 173.45462 * 15 13 3 17 17 C 1.38755 * 118.26539 * 180.02562 * 16 15 13 18 18 N 1.32202 * 119.15103 * 359.75180 * 17 16 15 19 19 C 1.31886 * 121.03253 * 0.50561 * 18 17 16 20 20 C 1.50694 * 119.04494 * 179.75750 * 19 18 17 21 21 C 1.53007 * 117.49728 * 59.72889 * 20 19 18 22 22 C 1.53006 * 60.03203 * 252.48029 * 21 20 19 23 23 N 1.31588 * 121.91381 * 359.48183 * 19 18 17 24 24 H 1.09003 * 109.46980 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47070 * 300.00104 * 1 2 3 26 26 H 1.09000 * 109.47194 * 59.99937 * 1 2 3 27 27 H 1.08994 * 109.46935 * 240.00114 * 2 1 3 28 28 H 1.09000 * 109.47194 * 120.00063 * 2 1 3 29 29 H 1.09003 * 109.47528 * 22.94834 * 4 3 2 30 30 H 1.09002 * 109.46789 * 142.94582 * 4 3 2 31 31 H 0.97000 * 120.00071 * 180.02562 * 8 7 5 32 32 H 1.08004 * 120.86570 * 0.04513 * 16 15 13 33 33 H 1.08009 * 120.42378 * 180.02562 * 17 16 15 34 34 H 1.08996 * 115.55366 * 205.40346 * 20 19 18 35 35 H 1.09000 * 117.49767 * 359.97438 * 21 20 19 36 36 H 1.08995 * 117.49821 * 144.97597 * 21 20 19 37 37 H 1.08991 * 117.50194 * 107.50028 * 22 21 20 38 38 H 1.09004 * 117.49155 * 252.52569 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1596 2.1082 -1.2640 5 6 3.5899 2.0293 -1.7318 6 1 4.3207 1.4918 -1.1459 7 6 3.9657 2.6442 -2.9072 8 7 3.0761 3.3000 -3.6199 9 14 5.7390 2.5469 -3.4866 10 1 6.1163 1.1250 -3.6891 11 1 5.8821 3.2837 -4.7680 12 1 6.6280 3.1542 -2.4639 13 6 2.3376 1.9832 1.1629 14 8 2.2810 1.3606 2.2046 15 6 2.7583 3.4068 1.1708 16 6 2.9600 4.0800 2.3762 17 6 3.3525 5.4101 2.3283 18 7 3.5254 5.9885 1.1522 19 6 3.3214 5.3242 0.0312 20 6 3.5266 6.0292 -1.2847 21 6 4.9185 6.5952 -1.5733 22 6 3.7610 7.5415 -1.2482 23 7 2.9488 4.0622 0.0285 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.5067 1.6625 -2.0145 30 1 1.8829 3.1520 -1.1156 31 1 3.3404 3.7323 -4.4470 32 1 2.8148 3.5789 3.3219 33 1 3.5188 5.9645 3.2402 34 1 2.9622 5.6277 -2.1262 35 1 5.6856 6.4580 -0.8112 36 1 5.2699 6.5656 -2.6047 37 1 3.7666 8.0267 -0.2722 38 1 3.3507 8.1342 -2.0658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351888848.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:53 Heat of formation + Delta-G solvation = 44.019516 kcal Electronic energy + Delta-G solvation = -21951.118028 eV Core-core repulsion = 18795.012746 eV Total energy + Delta-G solvation = -3156.105283 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.26779 -40.47381 -37.84336 -37.07289 -34.92420 -34.44861 -32.71162 -31.80107 -28.89459 -26.74058 -25.91201 -24.86574 -24.16517 -23.19241 -22.25805 -20.33959 -18.93543 -18.55892 -18.09490 -17.08692 -16.79304 -16.58015 -16.34015 -16.21009 -15.52111 -15.34686 -14.93927 -14.71635 -14.41851 -14.17381 -13.58425 -13.39622 -13.13086 -12.97961 -12.70157 -12.59991 -12.37248 -12.14873 -11.85883 -11.79826 -11.70412 -11.65456 -11.56886 -11.39038 -11.20567 -10.45377 -10.19632 -9.73481 -9.39751 -8.01907 -6.06398 -0.44778 0.09561 1.38706 1.40883 1.46171 1.75394 2.12168 2.47849 2.71655 2.82135 3.07552 3.28759 3.33548 3.55688 3.86588 4.02441 4.09470 4.14276 4.22620 4.26464 4.35888 4.51982 4.64424 4.71102 4.77891 4.80763 4.96738 4.98940 5.08996 5.22941 5.25791 5.32287 5.42164 5.57563 5.85568 5.90105 6.05347 6.29002 6.47022 6.92264 7.07434 7.24995 7.56022 9.05088 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.009981 C = 0.006403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.649208 B = 2804.579579 C = 4371.632912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.101 3.899 3 N -0.577 5.577 4 C 0.245 3.755 5 C -0.508 4.508 6 H 0.026 0.974 7 C 0.049 3.951 8 N -0.900 5.900 9 Si 0.924 3.076 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.284 1.284 13 C 0.557 3.443 14 O -0.579 6.579 15 C 0.103 3.897 16 C -0.181 4.181 17 C 0.150 3.850 18 N -0.512 5.512 19 C 0.324 3.676 20 C -0.114 4.114 21 C -0.157 4.157 22 C -0.127 4.127 23 N -0.446 5.446 24 H 0.092 0.908 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.008 0.992 30 H 0.074 0.926 31 H 0.262 0.738 32 H 0.171 0.829 33 H 0.222 0.778 34 H 0.115 0.885 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 5.592 7.071 9.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 N -0.305 5.305 4 C 0.125 3.875 5 C -0.547 4.547 6 H 0.045 0.955 7 C -0.152 4.152 8 N -0.540 5.540 9 Si 0.751 3.249 10 H -0.208 1.208 11 H -0.200 1.200 12 H -0.211 1.211 13 C 0.344 3.656 14 O -0.461 6.461 15 C -0.045 4.045 16 C -0.204 4.204 17 C -0.018 4.018 18 N -0.226 5.226 19 C 0.058 3.942 20 C -0.134 4.134 21 C -0.196 4.196 22 C -0.164 4.164 23 N -0.162 5.162 24 H 0.111 0.889 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.026 0.974 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.189 0.811 33 H 0.239 0.761 34 H 0.133 0.867 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.245 5.748 6.507 8.772 hybrid contribution 0.958 -0.962 0.069 1.360 sum -0.287 4.786 6.576 8.138 Atomic orbital electron populations 1.22009 0.94140 1.03365 1.01368 1.21589 0.95623 0.82042 1.02830 1.48386 1.59905 1.14350 1.07864 1.19754 0.95658 0.93879 0.78231 1.21135 0.94720 1.32623 1.06232 0.95530 1.25070 0.98869 0.94830 0.96388 1.69952 1.34167 1.34805 1.15039 0.86171 0.83084 0.77851 0.77766 1.20787 1.20041 1.21050 1.18126 0.77916 0.85789 0.83779 1.90636 1.57383 1.65544 1.32491 1.21794 0.96790 0.95130 0.90749 1.23108 1.00229 0.97347 0.99702 1.23961 0.89776 0.91101 0.96928 1.68063 1.15701 1.39782 0.99069 1.22565 0.90996 0.86929 0.93695 1.20634 1.03180 0.96833 0.92739 1.22889 0.90572 1.03558 1.02530 1.23074 0.99628 0.89286 1.04443 1.69111 1.10097 1.08733 1.28219 0.88879 0.93516 0.93017 0.90347 0.90534 0.97381 0.90853 0.92853 0.81146 0.76150 0.86663 0.89451 0.88143 0.86841 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 10.24 71.98 0.74 -3.89 16 2 C 0.10 3.77 6.18 86.38 0.53 4.30 16 3 N -0.58 -25.69 2.48 -828.88 -2.05 -27.74 16 4 C 0.24 12.19 4.79 85.63 0.41 12.60 16 5 C -0.51 -27.27 8.05 25.60 0.21 -27.07 16 6 H 0.03 1.51 7.81 -2.91 -0.02 1.49 16 7 C 0.05 2.59 5.46 84.66 0.46 3.06 16 8 N -0.90 -48.01 13.29 21.45 0.28 -47.73 16 9 Si 0.92 42.91 29.54 68.60 2.03 44.93 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 13 C 0.56 24.74 7.61 86.97 0.66 25.40 16 14 O -0.58 -26.01 15.93 -3.67 -0.06 -26.07 16 15 C 0.10 4.26 6.65 41.99 0.28 4.54 16 16 C -0.18 -5.77 9.72 22.71 0.22 -5.55 16 17 C 0.15 4.01 11.31 84.76 0.96 4.97 16 18 N -0.51 -16.78 9.33 -187.89 -1.75 -18.53 16 19 C 0.32 12.80 7.31 138.78 1.01 13.82 16 20 C -0.11 -4.24 6.23 -11.51 -0.07 -4.32 16 21 C -0.16 -5.05 10.23 30.60 0.31 -4.74 16 22 C -0.13 -3.50 10.01 30.62 0.31 -3.20 16 23 N -0.45 -19.82 5.14 -177.08 -0.91 -20.73 16 24 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 2.88 8.11 -2.39 -0.02 2.86 16 28 H 0.08 2.81 7.24 -2.39 -0.02 2.79 16 29 H 0.01 0.43 8.02 -2.39 -0.02 0.41 16 30 H 0.07 3.87 5.22 -2.56 -0.01 3.86 16 31 H 0.26 13.39 8.31 -92.71 -0.77 12.62 16 32 H 0.17 4.65 7.75 -2.91 -0.02 4.62 16 33 H 0.22 3.39 8.06 -2.91 -0.02 3.37 16 34 H 0.12 5.00 8.14 -2.39 -0.02 4.98 16 35 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.11 2.93 7.54 -2.39 -0.02 2.91 16 38 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -63.43 325.85 4.62 -58.80 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 1.06 Total: 17.14 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 6.03 Total: 19.93 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -4.43 Total: -114.73 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.06 Total: -26.07 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -63.43 4.62 -58.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351888848.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.821 kcal (2) G-P(sol) polarization free energy of solvation -63.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds